[Ref.: #8213] |
Sample type/isolated from |
kidney of moribund coho salmon (Oncorhyncus kisutch) |
[Ref.: #8213] |
Host species |
Oncorhyncus kisutch |
[Ref.: #8213] |
Geographic location (country and/or sea, region) |
Washington, Purget Sound |
[Ref.: #8213] |
Country |
USA |
[Ref.: #8213] |
Country ISO 3 Code |
USA |
[Ref.: #8213] |
Continent |
North America |
|
[Ref.: #54249] |
Sample type/isolated from |
Kidney of moribund coho salmon,Oncorhyncus kisutch |
[Ref.: #54249] |
Geographic location (country and/or sea, region) |
Washington,Purget Sound |
[Ref.: #54249] |
Country |
USA |
[Ref.: #54249] |
Country ISO 3 Code |
USA |
[Ref.: #54249] |
Continent |
North America |
|
[Ref.: #121431] |
Sample type/isolated from |
Animal, Moribund coho salmon, kidney tissue |
[Ref.: #121431] |
Geographic location (country and/or sea, region) |
Washington |
[Ref.: #121431] |
Country |
United States of America |
[Ref.: #121431] |
Country ISO 3 Code |
USA |
[Ref.: #121431] |
Continent |
North America |
* marker position based on {}
|
|
Isolation sources categories |
#Host |
#Fishes |
#Salmonidae |
#Host Body-Site |
#Urogenital tract |
#Kidney |
|
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #8213] |
V.ordalii gamma subclass (ATCC 33509) gene for 16S rRNA |
X70641 |
1480 |
|
990998 tax ID |
[Ref.: #8213] |
V.ordalii (ATCC 33509T) gene for 16S ribosomal RNA |
X74718 |
1425 |
|
990998 tax ID |
[Ref.: #20218] |
Vibrio ordalii strain ATCC 33509 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EU570972 |
598 |
|
990998 tax ID |
* |
[Ref.: #20218] |
Vibrio ordalii strain ATCC 33509 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer and tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence |
EU570973 |
476 |
|
990998 tax ID |
* |
[Ref.: #20218] |
Vibrio ordalii 16S rRNA |
D11214 |
219 |
|
28174 tax ID |
* |
[Ref.: #20218] |
Vibrio ordalii 16S rRNA |
D11263 |
214 |
|
28174 tax ID |
* |
[Ref.: #20218] |
Vibrio ordalii 16S rRNA |
D11312 |
192 |
|
28174 tax ID |
* |
[Ref.: #20218] |
Vibrio ordalii DNA, 16S-23S rRNA intergenic spacer, partial sequence, strain: ATCC 33509 |
AB255727 |
260 |
|
990998 tax ID |
* |
[Ref.: #20218] |
Vibrio ordalii strain ATCC 33509 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Glu, tRNA-Lys, and tRNA-Val genes, complete sequence |
FJ666335 |
724 |
|
990998 tax ID |
* |
[Ref.: #20218] |
Vibrio ordalii strain ATCC 33509 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Glu, tRNA-Lys, tRNA-Ala, and tRNA-Val genes, complete sequence |
FJ666336 |
821 |
|
990998 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #66792] |
Vibrio ordalii ATCC 33509 |
990998.3 |
wgs |
|
990998 tax ID |
* |
[Ref.: #66792] |
Vibrio ordalii Schiewe DF3K, ATCC 33509 |
2513237346 |
draft |
|
990998 tax ID |
* |
|
|
-
Availability in culture collections External links
[Ref.: #8213] |
Culture collection no. |
DSM 19621, ATCC 33509, CCRC 12916, CCUG 38425, CECT 582, CIP 103205, NCIMB 2167 |
[Ref.: #86327] |
SI-ID 7461
|
* |
|
Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Metabolism |
Identification and characterization of outer membrane vesicles from the fish pathogen Vibrio ordalii. |
Echeverria-Bugueno M, Espinosa-Lemunao R, Irgang R, Avendano-Herrera R |
J Fish Dis |
10.1111/jfd.13159 |
2020 |
* |
Genetics |
The complete genome sequence and analysis of vB_VorS-PVo5, a Vibrio phage infectious to the pathogenic bacterium Vibrio ordalii ATCC-33509. |
Echeverria-Vega A, Morales-Vicencio P, Saez-Saavedra C, Ceh J, Araya R |
Stand Genomic Sci |
10.1186/s40793-016-0166-6 |
2016 |
* |
Phylogeny |
Antigenic and molecular characterization of Vibrio ordalii strains isolated from Atlantic salmon Salmo salar in Chile. |
Silva-Rubio A, Acevedo C, Magarinos B, Jaureguiberry B, Toranzo AE, Avendano-Herrera R |
Dis Aquat Organ |
10.3354/dao01872 |
2008 |
* |
|
Evidence for the facultative intracellular behaviour of the fish pathogen Vibrio ordalii. |
Avendano-Herrera R, Arias-Munoz E, Rojas V, Toranzo AE, Poblete-Morales M, Cordova C, Irgang R |
J Fish Dis |
10.1111/jfd.13072 |
2019 |
* |
|
Cell-surface properties of Vibrio ordalii strains isolated from Atlantic salmon Salmo salar in Chilean farms. |
Ruiz P, Poblete M, Yanez AJ, Irgang R, Toranzo AE, Avendano-Herrera R |
Dis Aquat Organ |
10.3354/dao02820 |
2015 |
* |
|
- References
-
#8213 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 19621
|
-
-
-
#41338 |
; Curators of the CIP;
|
-
#54249 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 38425
|
-
-
#68368 |
Automatically annotated from API 20E .
|
-
#68369 |
Automatically annotated from API 20NE .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
-
#86327 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID7461.1 )
|
-
#121431 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 103205
|
- * These data were automatically processed and therefore are not curated
Change proposal
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