Vibrio mimicus (DSM 19130, ATCC 33653, CCM 4552)

Name: Vibrio mimicus (DSM 19130, ATCC 33653, CCM 4552)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17324

Type strain

Strain Designation 1721-77

Culture col. no. DSM 19130 ATCC 33653 CCM 4552 CCUG 13624 CDC 1721-77 4 more

NCBI tax ID(s) 674

Special Collections DSMZ CCUG CIP

History <- CCM 4552 <- N. Frimodt-Moeller; <- CDC, Atlanta; CDC 1721-77 <- State Board of Health North Carolina; CIP <- 1985, ATCC <- D.J. Brenner, CDC: strain 1721-77 <- North Carolina State Brd. Hlth., USA

Links

Vibrio mimicus 1721-77 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from human ear infection.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 5101

LMG 7896,ATCC 33653,CCUG 13624,NCTC 11435,CAIM 602,CIP 101888,CCM 4552,CECT 4218,CCRC 14161,KCTC 2737,BCRC 14161,DSM 19130

@ref 20215

Last LPSN update 2026-02-09 11:22:11

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio mimicus

Full scientific name Vibrio mimicus Davis et al. 1982

BacDive ID	Other strains from **Vibrio mimicus** (20)	Type strain
136567	V. mimicus 161, 269-80, CIP 106921, ATCC 33654
138390	V. mimicus 284, CIP 106975
142587	V. mimicus CCUG 13169
142588	V. mimicus CCUG 13170
142589	V. mimicus CCUG 13171
142590	V. mimicus CCUG 13172
142591	V. mimicus CCUG 13173
142592	V. mimicus CCUG 13174 A
142593	V. mimicus CCUG 13174 B
142594	V. mimicus CCUG 13174 C
142595	V. mimicus CCUG 13175
142596	V. mimicus CCUG 13176
148142	V. mimicus CCUG 34896
148143	V. mimicus CCUG 34897
148144	V. mimicus CCUG 34898
148145	V. mimicus CCUG 34899
150319	V. mimicus CCUG 39638
151360	V. mimicus CCUG 43851 A
151361	V. mimicus CCUG 43851 B
152949	V. mimicus CCUG 48106

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		96.1
125438			90.291
125438	negative		100
120955	negative	rod-shaped

Multimedia

@ref:	7928
multimedia content:	DSM_19130.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_19130.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7928	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
38804	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
7928	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
120955	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7928	positive	growth	28	mesophilic
7928	positive	growth	30	mesophilic
38804	positive	growth	25	mesophilic
45992	positive	growth	30-37	mesophilic
120955	positive	growth	15-41
120955	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
45992	aerobe
120955	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120955	NaCl	positive	growth	0-8 %
120955	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
120955	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
120955	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
120955	17234 ChEBI	glucose	+	fermentation
120955	17234 ChEBI	glucose	+	degradation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
120955	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
120955	17632 ChEBI	nitrate	+	reduction
120955	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
120955	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
120955	132112 ChEBI	sodium thiosulfate	+	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
120955	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
120955	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
120955	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
120955	17234 ChEBI	glucose		+
68369	35581 ChEBI	indole			+	from API 20NE
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120955	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120955	amylase	+
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
120955	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120955	caseinase	+	3.4.21.50
120955	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
120955	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120955	gamma-glutamyltransferase	+	2.3.2.2
120955	gelatinase	+
68369	gelatinase	+		from API 20NE
68368	gelatinase	+		from API 20E
120955	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
120955	lipase	+
68382	lipase (C 14)	-		from API zym
120955	lysine decarboxylase	+	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120955	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
120955	oxidase	+
120955	phenylalanine ammonia-lyase	-	4.3.1.24
120955	protease	+
68382	trypsin	-	3.4.21.4	from API zym
120955	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
120955	tween esterase	+
120955	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7928	+	-	+	+	+	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
7928	+	-	+	+	+	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
7928	+	-	+	+	+	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120955	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	+	-	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7928	+	+	+	-	-	-	+	+	+	-	+	+	+	+	+	-	-	+	+	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120955	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	+	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120955	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	+	-	-	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	+	-	-	-	+	-	-	+	+	+	+	-	+	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Organ	#Ear
#Infection	#Disease	-
#Infection	#Patient	-
#Host	#Human	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
7928	human ear infection	North Carolina	USA	USA	North America	35.7822	-80.7935 35.7822/-80.7935
45992	Human ear infection,35-yr-old female	North Carolina	USA	USA	North America
120955	Human, Ear	Northern California	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence X74713 (>99% sequence identity) for Vibrio cholerae from Microbeatlas

Aquatic Samples	4727
Soil Samples	252
Animal Samples	8651
Plant Samples	275
Total Samples	13905

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7928	2	Risk group (German classification) According to TRBA 466
120955	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	42650_F01 assembly for Vibrio mimicus NCTC11435	contig	GCA_900460385	674.53	2916739052	674	77.26

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 2	AF114744	509	674
20218	Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 3	AF114745	424	674
20218	Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 3	AF114746	430	674
20218	Vibrio mimicus RC5 16S-23S ribosomal RNA intergenic spacer region type 1	AF114747	670	674
20218	Vibrio mimicus 16S ribosomal RNA gene, partial sequence	AY292937	415	674
20218	Vibrio mimicus strain ATCC 33653 16S ribosomal RNA gene, partial sequence	GU048836	465	674
7928	V.mimicus (ATCC 33653T) gene for 16S ribosomal RNA	X74713	1457	674

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio mimicus NCTC11435
NCBI: GCA_900460385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	yes	52.20	no
125439	gram_stain	BacteriaNetⓘ	negative	96.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	70.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio mimicus strain NCTC11435
PATRIC: 674.53

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.75	yes
125438	spore-forming	spore-formingⓘ	no	87.57	no
125438	aerobic	aerobicⓘ	no	66.48	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	90.29	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Virulence and Antibiotic Resistance Characteristics of Vibrio Isolates From Rustic Environmental Freshwaters.	Gxalo O, Digban TO, Igere BE, Olapade OA, Okoh AI, Nwodo UU.	Front Cell Infect Microbiol	10.3389/fcimb.2021.732001	2021
	Limpet (Scutellastra cochlear) Recovered From Some Estuaries in the Eastern Cape Province, South Africa Act as Reservoirs of Pathogenic Vibrio Species.	Abioye OE, Okoh AI.	Front Public Health	10.3389/fpubh.2018.00237	2018
	Molecular Detection and Distribution of Six Medically Important Vibrio spp. in Selected Freshwater and Brackish Water Resources in Eastern Cape Province, South Africa.	Abioye OE, Osunla AC, Okoh AI.	Front Microbiol	10.3389/fmicb.2021.617703	2021
	Structures of the stator complex that drives rotation of the bacterial flagellum.	Deme JC, Johnson S, Vickery O, Aron A, Monkhouse H, Griffiths T, James RH, Berks BC, Coulton JW, Stansfeld PJ, Lea SM.	Nat Microbiol	10.1038/s41564-020-0788-8	2020
Metabolism	The substrate specificity switch FlhB assembles onto the export gate to regulate type three secretion.	Kuhlen L, Johnson S, Zeitler A, Baurle S, Deme JC, Caesar JJE, Debo R, Fisher J, Wagner S, Lea SM.	Nat Commun	10.1038/s41467-020-15071-9	2020
	Antibacterial activity against pathogenic Vibrio and cytotoxicity on human hepatocyte of nano-silver prepared by polysaccharide-protein complexes.	He P, Wang W, Jian W.	Front Microbiol	10.3389/fmicb.2024.1416844	2024
	Characterization of Potential Virulence Factors of Vibrio mimicus Isolated from Fishery Products and Water.	Hernandez-Robles MF, Natividad-Bonifacio I, Alvarez-Contreras AK, Tercero-Alburo JJ, Quinones-Ramirez EI, Vazquez-Salinas C.	Int J Microbiol	10.1155/2021/8397930	2021
	Evaluation of In Vitro Antimicrobial, Cytotoxic, Thrombolytic, and Antiarthritic Property of Different Parts of Bari Orchid.	Rahaman MS, Rahaman MS, Hasnine SMM, Sultana S, Bhuiyan MAQ, Kabir MS, Bari MA, Islam JMM, Hossain MI, Khan MA.	Evid Based Complement Alternat Med	10.1155/2024/8148610	2024
	Antimicrobial, antioxidant, and cytotoxic properties of endophytic fungi isolated from Thysanolaena maxima Roxb., Dracaena spicata Roxb. and Aglaonema hookerianum Schott.	Hoque N, Khan ZR, Rashid PT, Begum MN, Sharmin S, Hossain MJ, Rana MS, Sohrab MH.	BMC Complement Med Ther	10.1186/s12906-023-04185-4	2023
Genetics	Hybridization capture sequencing for Vibrio spp. and associated virulence factors.	Brumfield KD, Enke S, Swan BK, Carrasquilla L, Lee MD, Stern DB, Gieser L, Hasan NA, Usmani M, Jutla AS, Huq A, Caviness K, Goodrich JS, Bull R, Colwell RR.	mBio	10.1128/mbio.00516-25	2025
Genetics	Biological Characterization and Evaluation of the Therapeutic Value of Vibrio Phages 4141 and MJW Isolated from Clinical and Sewage Water Samples of Kolkata.	Biswas S, Tewari DN, Chakrabarti AK, Dutta S.	Viruses	10.3390/v16111741	2024
Phylogeny	Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics.	Kim HJ, Ryu JO, Lee SY, Kim ES, Kim HY.	BMC Microbiol	10.1186/s12866-015-0577-3	2015
Biotechnology	Molecular and Genomic Characterization of Vibrio mimicus Isolated from a Frozen Shrimp Processing Facility in Mexico.	Guardiola-Avila I, Acedo-Felix E, Sifuentes-Romero I, Yepiz-Plascencia G, Gomez-Gil B, Noriega-Orozco L.	PLoS One	10.1371/journal.pone.0144885	2016
Phylogeny	Characterization of Vibrio cholerae Strains Isolated from the Nigerian Cholera Outbreak in 2010.	Dupke S, Akinsinde KA, Grunow R, Iwalokun BA, Olukoya DK, Oluwadun A, Velavan TP, Jacob D.	J Clin Microbiol	10.1128/jcm.01467-16	2016
Phylogeny	Highly diverse recombining populations of Vibrio cholerae and Vibrio parahaemolyticus in French Mediterranean coastal lagoons.	Esteves K, Mosser T, Aujoulat F, Hervio-Heath D, Monfort P, Jumas-Bilak E.	Front Microbiol	10.3389/fmicb.2015.00708	2015
	A Novel PCR-Based Approach for Accurate Identification of Vibrio parahaemolyticus.	Li R, Chiou J, Chan EW, Chen S.	Front Microbiol	10.3389/fmicb.2016.00044	2016
Metabolism	Diversity, Structures, and Collagen-Degrading Mechanisms of Bacterial Collagenolytic Proteases.	Zhang YZ, Ran LY, Li CY, Chen XL.	Appl Environ Microbiol	10.1128/aem.00883-15	2015
Phylogeny	Diversity and functional analysis of luxS genes in vibrios from marine sponges Mycale laxissima and Ircinia strobilina.	Zan J, Fuqua C, Hill RT.	ISME J	10.1038/ismej.2011.31	2011
Metabolism	Viscosity dictates metabolic activity of Vibrio ruber.	Boric M, Danevcic T, Stopar D.	Front Microbiol	10.3389/fmicb.2012.00255	2012
Phylogeny	Differentiation of environmental and clinical isolates of Vibrio mimicus from Vibrio cholerae by multilocus enzyme electrophoresis.	Vieira VV, Teixeira LF, Vicente AC, Momen H, Salles CA.	Appl Environ Microbiol	10.1128/aem.67.5.2360-2364.2001	2001
	Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus.	Chun J, Huq A, Colwell RR.	Appl Environ Microbiol	10.1128/aem.65.5.2202-2208.1999	1999
	A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains.	Purdy A, Rohwer F, Edwards R, Azam F, Bartlett DH.	J Bacteriol	10.1128/jb.187.9.2992-3001.2005	2005
Phylogeny	The sixth and seventh cholera pandemics are due to independent clones separately derived from environmental, nontoxigenic, non-O1 Vibrio cholerae.	Karaolis DK, Lan R, Reeves PR.	J Bacteriol	10.1128/jb.177.11.3191-3198.1995	1995
Enzymology	Development of a toxR-based loop-mediated isothermal amplification assay for detecting Vibrio parahaemolyticus.	Chen S, Ge B.	BMC Microbiol	10.1186/1471-2180-10-41	2010
Enzymology	Comparison of conventional, nested, and real-time quantitative PCR for diagnosis of scrub typhus.	Kim DM, Park G, Kim HS, Lee JY, Neupane GP, Graves S, Stenos J.	J Clin Microbiol	10.1128/jcm.01216-09	2011
Phylogeny	Direct identification of Vibrio vulnificus in clinical specimens by nested PCR.	Lee SE, Kim SY, Kim SJ, Kim HS, Shin JH, Choi SH, Chung SS, Rhee JH.	J Clin Microbiol	10.1128/jcm.36.10.2887-2892.1998	1998
Metabolism	Identification of a cellobiose utilization gene cluster with cryptic beta-galactosidase activity in Vibrio fischeri.	Adin DM, Visick KL, Stabb EV.	Appl Environ Microbiol	10.1128/aem.00190-08	2008
	Coagglutination of Vibrio cholerae, Vibrio mimicus, and Vibrio vulnificus with anti-flagellar monoclonal antibody.	Simonson JG, Siebeling RJ.	J Clin Microbiol	10.1128/jcm.26.10.1962-1966.1988	1988
Enzymology	Use of the polymerase chain reaction in detection of culturable and nonculturable Vibrio vulnificus cells.	Brauns LA, Hudson MC, Oliver JD.	Appl Environ Microbiol	10.1128/aem.57.9.2651-2655.1991	1991
Metabolism	Rapid detection of viable salmonellae in produce by coupling propidium monoazide with loop-mediated isothermal amplification.	Chen S, Wang F, Beaulieu JC, Stein RE, Ge B.	Appl Environ Microbiol	10.1128/aem.00354-11	2011
Metabolism	TaqMan PCR for detection of Vibrio cholerae O1, O139, non-O1, and non-O139 in pure cultures, raw oysters, and synthetic seawater.	Lyon WJ.	Appl Environ Microbiol	10.1128/aem.67.10.4685-4693.2001	2001
Enzymology	Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis), a new species isolated from human feces and the environment.	Brenner DJ, Hickman-Brenner FW, Lee JV, Steigerwalt AG, Fanning GR, Hollis DG, Farmer JJ, Weaver RE, Joseph SW, Seidler RJ.	J Clin Microbiol	10.1128/jcm.18.4.816-824.1983	1983
Enzymology	Purification and characterization of Vibrio metschnikovii cytolysin.	Miyake M, Honda T, Miwatani T.	Infect Immun	10.1128/iai.56.4.954-960.1988	1988
Enzymology	Detection of bacterial pathogens by phage antibody display.	Pai N, Topping KP, Greenman J, Paget TA.	Dis Markers	10.1155/2000/725976	2000
Genetics	Draft Genome Sequence of Vibrio mimicus Strain CAIM 602T.	Guardiola-Avila I, Acedo-Felix E, Noriega-Orozco L, Yepiz-Plascencia G, Sifuentes-Romero I, Gomez-Gil B	Genome Announc	10.1128/genomeA.00084-13	2013
Pathogenicity	Response of pathogenic Vibrio species to high hydrostatic pressure.	Berlin DL, Herson DS, Hicks DT, Hoover DG	Appl Environ Microbiol	10.1128/AEM.65.6.2776-2780.1999	1999
Enzymology	Cloning and identification of a phospholipase gene from vibrio mimicus.	Kang JH, Lee JH, Park JH, Huh SH, Kong IS	Biochim Biophys Acta	10.1016/s0005-2760(98)00100-3	1998
Transcriptome	Isolation and sequence analysis of metalloprotease gene from Vibrio mimicus.	Lee JH, Kim GT, Lee JY, Jun HK, Yu JH, Kong IS	Biochim Biophys Acta	10.1016/s0167-4838(97)00205-7	1998
Genetics	Nucleotide sequence of the vmhA gene encoding hemolysin from Vibrio mimicus.	Kim GT, Lee JY, Huh SH, Yu JH, Kong IS	Biochim Biophys Acta	10.1016/s0925-4439(97)00008-2	1997
Metabolism	Identification of the siderophores from Vibrio hollisae and Vibrio mimicus as aerobactin.	Okujo N, Yamamoto S	FEMS Microbiol Lett	10.1111/j.1574-6968.1994.tb06824.x	1994
Phylogeny	Characterization of biochemically atypical Vibrio cholerae strains and designation of a new pathogenic species, Vibrio mimicus.	Davis BR, Fanning GR, Madden JM, Steigerwalt AG, Bradford HB Jr, Smith HL Jr, Brenner DJ	J Clin Microbiol	10.1128/jcm.14.6.631-639.1981	1981
Phylogeny	Vibrio chanodichtyis sp. nov., isolated from the intestine of swordfish Chanodichthys dabryi.	Wu N, Liu L, Liu K, Shao J, Nie Z, He J, Shen Q.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006117	2023
Phylogeny	Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).	Rameshkumar N, Fukui Y, Sawabe T, Nair S	Int J Syst Evol Microbiol	10.1099/ijs.0.65604-0	2008

References

#7928	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19130
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38804	; Curators of the CIP;
#45992	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13624
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120955	Collection of Institut Pasteur ; Curators of the CIP; CIP 101888
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio mimicus (DSM 19130, ATCC 33653, CCM 4552)

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