[Ref.: #8123] |
Sample type/isolated from |
oyster |
[Ref.: #8123] |
Geographic location (country and/or sea, region) |
Oregon, Yaquina Bay |
[Ref.: #8123] |
Country |
USA |
[Ref.: #8123] |
Country ISO 3 Code |
USA |
[Ref.: #8123] |
Continent |
North America |
|
[Ref.: #49287] |
Sample type/isolated from |
Oyster |
[Ref.: #49287] |
Geographic location (country and/or sea, region) |
Oregon,Yaquina Bay |
[Ref.: #49287] |
Country |
USA |
[Ref.: #49287] |
Country ISO 3 Code |
USA |
[Ref.: #49287] |
Continent |
North America |
|
[Ref.: #116096] |
Sample type/isolated from |
Food, Oyster |
[Ref.: #116096] |
Geographic location (country and/or sea, region) |
Oregon |
[Ref.: #116096] |
Country |
United States of America |
[Ref.: #116096] |
Country ISO 3 Code |
USA |
[Ref.: #116096] |
Continent |
North America |
* marker position based on {}
|
|
Isolation sources categories |
#Host |
#Invertebrates (Other) |
#Mollusca |
|
|
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #8123] |
V.aestuarianus (ATCC 35048T) gene for 16S ribosomal RNA |
X74689 |
1427 |
|
28171 tax ID |
[Ref.: #20218] |
Vibrio aestuarianus 16S rRNA |
D11191 |
206 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus 16S rRNA |
D11240 |
214 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus 16S rRNA |
D11289 |
190 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus gene for 16S rRNA, partial sequence, strain: NBRC 15629 |
AB680915 |
1472 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus strain ATCC 35048 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence |
AF412991 |
565 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus strain ATCC 35048 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence |
AF412992 |
564 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus strain ATCC 35048 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence |
AF412993 |
466 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus strain ATCC 35048 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ala gene, complete sequence |
AF412994 |
439 |
|
28171 tax ID |
* |
[Ref.: #20218] |
Vibrio aestuarianus strain ATCC 35048 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu and tRNA-Val genes, complete sequence |
AF412995 |
723 |
|
28171 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #66792] |
Vibrio aestuarianus LMG 7909 |
GCA_012395185 |
contig |
|
28171 tax ID |
* |
[Ref.: #66792] |
Vibrio aestuarianus strain LMG 7909 |
28171.14 |
wgs |
|
28171 tax ID |
* |
|
|
-
Availability in culture collections External links
[Ref.: #8123] |
Culture collection no. |
DSM 19606, ATCC 35048, CAIM 592, CCUG 28583, CECT 625, CIP 102971, LMG 7909, NBRC 15629, NCMB 2236 |
[Ref.: #86318] |
SI-ID 5045
|
* |
|
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Vibrio aestuarianus subsp. cardii subsp. nov., pathogenic to the edible cockles Cerastoderma edule in France, and establishment of Vibrio aestuarianus subsp. aestuarianus subsp. nov. and Vibrio aestuarianus subsp. francensis subsp. nov. |
Garcia C, Mesnil A, Tourbiez D, Moussa M, Dubreuil C, Goncalves de Sa A, Chollet B, Godfrin Y, Degremont L, Serpin D, Travers MA |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.004654 |
2021 |
* |
Phylogeny |
Vibrio agarilyticus sp. nov., an agar-digesting marine bacterium isolated from coastal seawater in Daya Bay (Guangdong, China). |
Wang X, Guo F, Tian P, Yu S, Xue CX, Wang W, Xiao J, Niu W |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.004647 |
2021 |
* |
Phylogeny |
Vibrio sinensis sp. nov. and Vibrio viridaestus sp. nov., two marine bacteria isolated from the East China Sea. |
Li Y, Liang J, Liu R, Xue CX, Zhou S, He X, Li B, Wang X, Zhang XH |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.003842 |
2020 |
* |
Phylogeny |
Vibrio oceanisediminis sp. nov., a nitrogen-fixing bacterium isolated from an artificial oil-spill marine sediment. |
Kang SR, Srinivasan S, Lee SS |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.000456 |
2015 |
* |
Phylogeny |
Vibrio salilacus sp. nov., a new member of the Anguillarum clade with six alleles of the 16S rRNA gene from a saline lake. |
Zhong ZP, Liu Y, Liu HC, Wang F, Zhou YG, Liu ZP |
Int J Syst Evol Microbiol |
10.1099/ijs.0.000316 |
2015 |
* |
Phylogeny |
Molecular and phenotypic characterization of Vibrio aestuarianus subsp. francensis subsp. nov., a pathogen of the oyster Crassostrea gigas. |
Garnier M, Labreuche Y, Nicolas JL |
Syst Appl Microbiol |
10.1016/j.syapm.2008.06.003 |
2008 |
* |
|
- References
-
#8123 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 19606
|
-
-
-
#36513 |
; Curators of the CIP;
|
-
#49287 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 28583
|
-
-
#68369 |
Automatically annotated from API 20NE .
|
-
#68382 |
Automatically annotated from API zym .
|
-
#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
|
-
-
#86318 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID5045.1 )
|
-
#116096 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 102971
|
- * These data were automatically processed and therefore are not curated
Change proposal
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