Name: Vibrio litoralis MANO22D
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17312

Type strain:

Species: Vibrio litoralis

Strain Designation: MANO22D, Mano22 deep

Culture col. no.: DSM 17657, CAIM 315, CIP 109585, KCTC 12520

Strain history: CIP <- 2007, DSMZ <- Y. D. Nam, KRIBB, Daejon, Korea: strain MANO22D

NCBI tax ID(s): 1123493 (strain), 335972 (species)

SI-ID 297374

DSM 17657, KCTC 12520, CIP 109585

Special Collections

Section

When using BacDive for research please cite our paper

Vibrio litoralis MANO22D is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio litoralis**
	Full Scientific Name (LPSN)	Vibrio litoralis Nam et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31921]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #120636]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99.5
[Ref.: #125439]	Gram stain	negative Confidence in %97.5

[Ref.: #31921]	Cell length	2.5 µm

[Ref.: #31921]	Cell width	0.7 µm

[Ref.: #31921]	Cell shape	rod-shaped
[Ref.: #120636]	Cell shape	rod-shaped

[Ref.: #31921]	Motility	yes
[Ref.: #120636]	Motility	no

[Ref.: #31921]

Pigment production

yes

Multimedia content

[Ref.: #7109]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7109]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7109]

Culture medium growth

[Ref.: #7109]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7109]

Culture medium composition

expand / minimize

[Ref.: #37650]

Culture medium

Marine agar (MA)

[Ref.: #37650]

Culture medium growth

[Ref.: #37650]

Culture medium composition

expand / minimize

[Ref.: #120636]

Culture medium

CIP Medium 13

[Ref.: #120636]

Culture medium growth

[Ref.: #120636]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7109]	growth	28 °C
[Ref.: #31921]	growth	4-45 °C
[Ref.: #31921]	optimum	27.5 °C
[Ref.: #37650]	growth	30 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #31921]			optimum	6.9
[Ref.: #31921]			growth	4.1-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31921]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %93.6

[Ref.: #125439]

Ability of spore formation

no Confidence in %99.5

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31921]		NaCl		growth	01-12	%
[Ref.: #31921]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #31921]	alanine ChEBI	+	carbon source
[Ref.: #31921]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31921]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31921]	galactose ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #31921]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31921]	glucose ChEBI	+	carbon source
[Ref.: #31921]	glycerol ChEBI	+	carbon source
[Ref.: #31921]	inosine ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31921]	malate ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #31921]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #31921]	mannitol ChEBI	+	carbon source
[Ref.: #31921]	mannose ChEBI	+	carbon source
[Ref.: #31921]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #31921]	nitrate ChEBI	+	reduction
[Ref.: #120636]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #120636]	nitrite ChEBI	-	reduction
[Ref.: #31921]	proline ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #31921]	tween 80 ChEBI	+	carbon source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120636]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31921]	catalase	+	1.11.1.6
[Ref.: #120636]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #31921]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120636]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #31921]	urease	+	3.5.1.5
[Ref.: #120636]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #7109]	26120	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120636]	11977	-	+	+	-	-	+	-	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7109]	Sample type/isolated from	seawater
[Ref.: #7109]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #7109]	Country	Republic of Korea
[Ref.: #7109]	Country ISO 3 Code	KOR
[Ref.: #7109]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sea water
[Ref.: #67771]	Geographic location (country and/or sea, region)	West Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120636]	Sample type/isolated from	Environment, Seawater
[Ref.: #120636]	Geographic location (country and/or sea, region)	Chung Nam
[Ref.: #120636]	Country	Republic of Korea
[Ref.: #120636]	Country ISO 3 Code	KOR
[Ref.: #120636]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ097523 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	62
Soil Samples	4
Animal Samples	66
Plant Samples	2
Total Samples	134

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7109]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120636]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7109]	Vibrio litoralis strain MANO22D 16S ribosomal RNA gene, partial sequence	DQ097523	1441	GenBank ENA	335972 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio litoralis DSM 17657	GCA_000426765	scaffold	GenBank ENA	1123493 tax ID	*
[Ref.: #66792]	Vibrio litoralis DSM 17657	1123493.3	wgs	PATRIC	1123493 tax ID	*
[Ref.: #66792]	Vibrio litoralis DSM 17657	2524614821	draft	JGI IMG/M	1123493 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio litoralis DSM 17657 DSM 17657 NCBI: GCA_000426765.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.451	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	68.062	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.934	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	100	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	51.847	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio litoralis DSM 17657 NCBI: GCA_000426765
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	61.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	93.6

Availability in culture collections External links

[Ref.: #7109]

Culture collection no.

DSM 17657, CAIM 315, CIP 109585, KCTC 12520

[Ref.: #86312]

SI-ID 297374

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio ulleungensis sp. nov., isolated from Mytilus coruscus.	Moon YL, Park JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005136	2021	*
Phylogeny	Vibrio gangliei sp. nov., a novel member of Vibrionaceae isolated from sawdust in a pigpen.	Meng YC, Liu HC, Zhou YG, Cai M, Kang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002779	2018	*
Phylogeny	Vibrio algivorus sp. nov., an alginate- and agarose-assimilating bacterium isolated from the gut flora of a turban shell marine snail.	Doi H, Chinen A, Fukuda H, Usuda Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001165	2016	*
Phylogeny	Vibrio casei sp. nov., isolated from the surfaces of two French red smear soft cheeses.	Bleicher A, Neuhaus K, Scherer S	Int J Syst Evol Microbiol	10.1099/ijs.0.016493-0	2009	*
Phylogeny	Vibrio litoralis sp. nov., isolated from a Yellow Sea tidal flat in Korea.	Nam YD, Chang HW, Park JR, Kwon HY, Quan ZX, Park YH, Kim BC, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.64653-0	2007	*

References

#7109

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17657

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31921

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28178 (see below)

#37650 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86312

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297374.1 )

#120636 Collection of Institut Pasteur ; Curators of the CIP; CIP 109585

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28178

IJSEM 562 2007 ( DOI 10.1099/ijs.0.64653-0 , PubMed 17329785 )

* These data were automatically processed and therefore are not curated

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Vibrio litoralis DSM 17657 DSM 17657

Vibrio litoralis DSM 17657

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