Name: Vibrio halioticoli A431
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17310

Type strain:

Species: Vibrio halioticoli

Strain Designation: A431

Culture col. no.: DSM 21474, ATCC 700680, CAIM 283, CIP 106283, IAM 14596, JCM 21271, LMG 18542, NBRC 102217, NCIMB 13540

Strain history: IAM 14596 <-- T. Sawabe A431.

NCBI tax ID(s): 1219072 (strain), 71388 (species)

Other strains from Vibrio halioticoli

V. halioticoli HE1-1, DSM 17532
V. halioticoli CIP 106284, IAM 14597, JCM 21272, ...
V. halioticoli CIP 106285, IAM 14598, JCM 21273, ...
V. halioticoli CIP 106286, IAM 14599, JCM 21274

Section

Vibrio halioticoli A431 is a mesophilic bacterium that was isolated from gut of the abalone Haliotis discus hannai.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio halioticoli**
	Full Scientific Name (PNU)	Vibrio halioticoli Sawabe et al. 1998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15726]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #15726]

Culture medium growth

[Ref.: #15726]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #15726]

Culture medium composition

expand / minimize

[Ref.: #32951]

Culture medium

Marine agar (MA)

[Ref.: #32951]

Culture medium growth

[Ref.: #32951]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15726]	growth	28 °C
[Ref.: #32951]	growth	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #15726]	Temperature range	mesophilic
[Ref.: #32951]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15726]

Name of produced compound

alginolytic enzymes

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #15726]	20839	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15726]	Sample type/isolated from	gut of the abalone Haliotis discus hannai
[Ref.: #15726]	Host species	Haliotis discus hannai
[Ref.: #15726]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #15726]	Country	Japan
[Ref.: #15726]	Country ISO 3 Code	JPN
[Ref.: #15726]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Gut of abalones
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15726]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vibrio halioticoli gene for 16S rRNA, partial sequence, strain: NBRC 102217	AB681731	1478	ENA	71388 tax ID	*
[Ref.: #20218]	Vibrio halioticoli strain CAIM 283 16S ribosomal RNA gene, partial sequence	EF094889	544	ENA	71388 tax ID	*
[Ref.: #15726]	Vibrio halioticoli gene for 16S rRNA, partial sequence, strain:IAM14596	AB000390	1428	ENA	71388 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio halioticoli NBRC 102217	1219072.3	wgs	PATRIC	1219072 tax ID	*
[Ref.: #66792]	Vibrio halioticoli strain IAM 14596	71388.4	wgs	PATRIC	71388 tax ID	*
[Ref.: #66792]	Vibrio halioticoli NBRC 102217	2563367142	draft	JGI IMG/M	1219072 tax ID	*
[Ref.: #66792]	Vibrio halioticoli IAM 14596	2916722216	draft	JGI IMG/M	71388 tax ID	*
[Ref.: #67770]	Vibrio halioticoli NBRC 102217 NBRC 102217	GCA_000496695	contig	GenBank	1219072 tax ID
[Ref.: #67770]	Vibrio halioticoli IAM 14596	GCA_003568965	scaffold	GenBank	71388 tax ID

Availability in culture collections External links

[Ref.: #15726]

Culture collection no.

DSM 21474, ATCC 700680, CAIM 283, CIP 106283, IAM 14596, JCM 21271, LMG 18542, NBRC 102217, NCIMB 13540

[Ref.: #20218]

Associated Passport(s) in StrainInfo

900929, 118326, 622151, 156157, 47749, 719346, 47748, 715525, 47750

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio halioticoli sp. nov., a non-motile alginolytic marine bacterium isolated from the gut of the abalone Haliotis discus hannai.	Sawabe T, Sugimura I, Ohtsuka M, Nakano K, Tajima K, Ezura Y, Christen R	Int J Syst Bacteriol	10.1099/00207713-48-2-573	1998	*
Enzymology	Cloning and Sequence Analysis of Vibrio halioticoli Genes Encoding Three Types of Polyguluronate Lyase.	Sugimura I I, Sawabe T, Ezura Y	Mar Biotechnol (NY)	10.1007/s101269900010	2000	*
Phylogeny	Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.	Gao F, Al-Saari N, Rohul Amin AK, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T	Syst Appl Microbiol	10.1016/j.syapm.2016.04.002	2016	*
	In Situ Polymerase Chain Reaction Visualization of Vibrio halioticoli Using Alginate Lyase Gene AlyVG2.	Sugimura I I, Sawabe T, Ezura Y	Mar Biotechnol (NY)	10.1007/s101269900009	2000	*

References

#15726

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21474

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32951 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Vibrio halioticoli in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF