Vibrio aerogenes (DSM 14438, ATCC 700797, CCRC 17041)

Name: Vibrio aerogenes (DSM 14438, ATCC 700797, CCRC 17041)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17291

Type strain

Strain Designation FG1

Culture col. no. DSM 14438 ATCC 700797 CCRC 17041 KCTC 12701 CCUG 43576 5 more

NCBI tax ID(s) 1216006 92172

Special Collections DSMZ CCUG KCTC CIP

History DSMZ <- ATCC <- W. Y. Shieh <- A.-L. Chen CIP <- 2004, W.Y. Shieh, Taiwan Univ., Taipei, Taiwan: strain FG1 KCTC <- DSM <- ATCC <- WY Shieh <- A-L Chen CIP <- 2004, W.Y. Shieh, Taiwan Univ., Taipei, Taiwan: strain FG1

Links

Vibrio aerogenes FG1 is an aerobe, Gram-negative bacterium that was isolated from seagrass bed sediment.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13436

LMG 19650,ATCC 700797,CCRC 17041,CCUG 43576,CAIM:906,DSM 14438,BCRC 17041,KCTC 12701,CGMCC 1.3790,CIP 108258,CECT 7868

@ref 20215

Last LPSN update 2026-05-29 08:28:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio aerogenes

Full scientific name Vibrio aerogenes Shieh et al. 2000

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
67771	negative
125438	negative		99
116068	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
33928	Marine agar (MA)			Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
5354	MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)		Medium recipe at MediaDive	Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5354	positive	growth	28
33928	positive	growth	25
55948	positive	growth	26
67771	positive	growth	28
116068	positive	growth	15-37
116068	negative	growth	5
116068	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
55948	aerobe
67771	aerobe
116068	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125438		91.143

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116068	NaCl	positive	growth	2-10 %
116068	NaCl		growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
116068	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
116068	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
116068	17234 ChEBI	glucose	+	fermentation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
116068	17716 ChEBI	lactose	-	fermentation
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
116068	17632 ChEBI	nitrate	+	reduction
116068	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
116068	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
116068	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
116068	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116068	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
116068	17234 ChEBI	glucose		-
68369	35581 ChEBI	indole			+	from API 20NE
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116068	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116068	amylase	+
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
116068	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116068	caseinase	+	3.4.21.50
116068	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
116068	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
116068	gamma-glutamyltransferase	+	2.3.2.2
116068	gelatinase	+/-
68369	gelatinase	+		from API 20NE
68368	gelatinase	+		from API 20E
116068	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
116068	lipase	-
68382	lipase (C 14)	-		from API zym
116068	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116068	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
116068	oxidase	-
116068	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
116068	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116068	tween esterase	-
116068	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	biotin biosynthesis	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	ubiquinone biosynthesis	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	acetoin degradation	100	3 of 3
66794	photosynthesis	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	d-mannose degradation	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	glutathione metabolism	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B6 metabolism	81.82	9 of 11
66794	starch degradation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	pyrimidine metabolism	80	36 of 45
66794	factor 420 biosynthesis	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	purine metabolism	79.79	75 of 94
66794	alanine metabolism	79.31	23 of 29
66794	heme metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	lipid A biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	chorismate metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	lipid metabolism	77.42	24 of 31
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	vitamin B12 metabolism	70.59	24 of 34
66794	leucine metabolism	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	methane metabolism	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	d-xylose degradation	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	arginine metabolism	62.5	15 of 24
66794	urea cycle	61.54	8 of 13
66794	oxidative phosphorylation	61.54	56 of 91
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	tryptophan metabolism	60.53	23 of 38
66794	lipoate biosynthesis	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	methionine metabolism	57.69	15 of 26
66794	lysine metabolism	57.14	24 of 42
66794	degradation of pentoses	57.14	16 of 28
66794	propanol degradation	57.14	4 of 7
66794	degradation of sugar acids	56	14 of 25
66794	degradation of sugar alcohols	50	8 of 16
66794	pantothenate biosynthesis	50	3 of 6
66794	myo-inositol biosynthesis	50	5 of 10
66794	ascorbate metabolism	50	11 of 22
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	tyrosine metabolism	50	7 of 14
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	sulfate reduction	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	glycine betaine biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	ketogluconate metabolism	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	nitrate assimilation	33.33	3 of 9
66794	degradation of hexoses	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	polyamine pathway	26.09	6 of 23
66794	alginate biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	allantoin degradation	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

55948

Fatty acid	Percentage	ECL
C16:1 ω7c	33.9	15.819
C16:0	22.8	16
C18:2 ω6,9c/C18:0 ANTE	12.3	17.724
C15:0 ISO 3OH	4.7	16.135
C14:0	4.4	14
C12:0	4	12
Unidentified	2.8	16.291
C12:0 3OH	2.3	13.455
C15:0	2.2	15
C14:0 3OH/C16:1 ISO I	1.8	15.485
Unidentified	1.5	12.672
Unidentified	1.2	12.259
C17:0	1	17
Unidentified	0.9	14.275
Unidentified	0.9	18.132
Unidentified	0.7	15.285
C17:1 ω9c	0.6	16.773
C17:1 ω6c	0.5	16.862
unknown 12.486	0.4	12.486
C18:0	0.4	18
C10:0 3OH	0.3	11.423
C13:0	0.3	13
C16:1 ω11c	0.2	15.757

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
5354	+	-	-	-	+	-	-	-	+	+	+	+	+/-	+/-	-	-	+	-	+/-	-	+/-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116068	-	+	+	-	-	+	+	-	+	-	+	+	-	-	-	-	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
5354	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	-	-	+	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116068	not determinedn.d.	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	+	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	+	+	+	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Aquatic plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5354	seagrass bed sediment	Nanwan Bay	Taiwan, Province of China	TWN	Asia
55948	Seagrass bed sediment	Nanwan Bay	Taiwan, Province of China	TWN	Asia
67771	From Seagrass bed sediment; Taiwan		Taiwan, Province of China	TWN	Asia
116068	Seagrass bed sediment	Nanwan bay	Taiwan, Province of China	TWN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5354	1	Risk group (German classification) According to TRBA 466
116068	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434675v1 assembly for Vibrio aerogenes LMG 19650	complete	GCA_024346755	92172.5	8113008417	92172	91.2

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio aerogenes 16S ribosomal RNA gene, partial sequence	AF124055	1350	1216006
20218	Vibrio aerogenes partial 16S rRNA gene, strain FG1	HF558385	1515	92172
20218	Vibrio aerogenes partial 16S rRNA gene, type strain CECT 7868T	HE795126	1459	1216006

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio aerogenes LMG 19650
NCBI: GCA_024346755.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	90.40	no
125438	aerobic	aerobicⓘ	no	72.55	no
125438	spore-forming	spore-formingⓘ	no	91.14	no
125438	thermophilic	thermophileⓘ	no	98.36	yes
125438	flagellated	motile2+ⓘ	yes	85.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Comparative impact of thermal and high isostatic pressure inactivation of gram-negative microorganisms on the endotoxic potential of reconstituted powder milk	Aires Machado KI, Roquetto AR, Moura CS, de Souza Lopes A, Cristianini M, Amaya-Farfan J.	Lebensm Wiss Technol	10.1016/j.lwt.2019.02.064	2019
	Temperature-Sensitive Lipids Reveal Intraspecific Diversity in Bacteria Isolated from an Ancient Antarctic Microbial Mat.	Lezcano MA, Carrizo D, Lominchar MA, Sanchez-Garcia L, Quesada A, Parro V.	Microb Ecol	10.1007/s00248-025-02583-4	2025
	Microorganism microneedle micro-engine depth drug delivery.	Zheng B, Li Q, Fang L, Cai X, Liu Y, Duo Y, Li B, Wu Z, Shen B, Bai Y, Cheng SX, Zhang X.	Nat Commun	10.1038/s41467-024-53280-8	2024
	Phytochemical composition and antimicrobial, and anti-quorum sensing activities of Punica granatum L. methanolic extract.	Hamrita B, Noumi E, Hafi F, Nazzaro F, Snoussi M.	Iran J Microbiol	10.18502/ijm.v14i3.9778	2022
	Draft Genome Sequences of Vibrio renopiscarius Strains CECT 8603T and CECT 8604, Two Marine Gammaproteobacteria Isolated from Cultured Gilthead Sea Bream (Sparus aurata).	Arahal DR, Rodrigo-Torres L, Lucena T, Pujalte MJ.	Genome Announc	10.1128/genomea.00099-15	2015
	Plesiomonas shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome.	Adam Y, Brezellec P, Espinosa E, Besombes A, Naquin D, Paly E, Possoz C, van Dijk E, Barre FX, Ferat JL.	Genome Biol Evol	10.1093/gbe/evac011	2022
Metabolism	Structure of a polysaccharide from the lipopolysaccharides of Vibrio vulnificus strains CECT 5198 and S3-I2-36, which is remarkably similar to the O-polysaccharide of Pseudoalteromonas rubra ATCC 29570.	Shashkov AS, Senchenkova SN, Chizhov AO, Knirel YA, Esteve C, Alcaide E, Merino S, Tomas JM.	Carbohydr Res	10.1016/j.carres.2009.06.035	2009
	A Culture Independent Method for the Detection of Aeromonas sp. from Water Samples.	Latif-Eugenin F, Beaz-Hidalgo R, Maria Jose F.	Ital J Food Saf	10.4081/ijfs.2016.5489	2016
	Functional characterization of a broad and potent neutralizing monoclonal antibody directed against outer membrane protein (OMP) of Salmonella typhimurium.	Reddy PN, Makam SS, Kota RK, Yatung G, Urs RM, Batra H, Tuteja U.	Appl Microbiol Biotechnol	10.1007/s00253-020-10394-5	2020
	Generation of Genetic Tools for Gauging Multiple-Gene Expression at the Single-Cell Level.	Mellini M, Lucidi M, Imperi F, Visca P, Leoni L, Rampioni G.	Appl Environ Microbiol	10.1128/aem.02956-20	2021
Metabolism	Hydrogen Production from Energy Poplar Preceded by MEA Pre-Treatment and Enzymatic Hydrolysis.	Kucharska K, Lukajtis R, Slupek E, Cieslinski H, Rybarczyk P, Kaminski M.	Molecules	10.3390/molecules23113029	2018
	3-Hydroxypropionaldehyde production from crude glycerol by Lactobacillus diolivorans with enhanced glycerol uptake.	Lindlbauer KA, Marx H, Sauer M.	Biotechnol Biofuels	10.1186/s13068-017-0982-y	2017
	Unlocking NuriPep 1653 From Common Pea Protein: A Potent Antimicrobial Peptide to Tackle a Pan-Drug Resistant Acinetobacter baumannii.	Mohan NM, Zorgani A, Jalowicki G, Kerr A, Khaldi N, Martins M.	Front Microbiol	10.3389/fmicb.2019.02086	2019
	Essential Oil Composition, Antimicrobial and Pharmacological Activities of Lippia sidoides Cham. (Verbenaceae) From São Gonçalo do Abaeté, Minas Gerais, Brazil.	de Morais SR, Oliveira TL, de Oliveira LP, Tresvenzol LM, da Conceicao EC, Rezende MH, Fiuza TS, Costa EA, Ferri PH, de Paula JR.	Pharmacogn Mag	10.4103/0973-1296.192197	2016
Metabolism	Receptor polymorphism restricts contact-dependent growth inhibition to members of the same species.	Ruhe ZC, Wallace AB, Low DA, Hayes CS.	mBio	10.1128/mbio.00480-13	2013
Transcriptome	Whole transcriptome profiling of successful immune response to Vibrio infections in the oyster Crassostrea gigas by digital gene expression analysis.	de Lorgeril J, Zenagui R, Rosa RD, Piquemal D, Bachere E.	PLoS One	10.1371/journal.pone.0023142	2011
Pathogenicity	Protection of Salmonella by ampicillin-resistant Escherichia coli in the presence of otherwise lethal drug concentrations.	Perlin MH, Clark DR, McKenzie C, Patel H, Jackson N, Kormanik C, Powell C, Bajorek A, Myers DA, Dugatkin LA, Atlas RM.	Proc Biol Sci	10.1098/rspb.2009.0997	2009
Metabolism	The antimicrobial compound xantholysin defines a new group of Pseudomonas cyclic lipopeptides.	Li W, Rokni-Zadeh H, De Vleeschouwer M, Ghequire MG, Sinnaeve D, Xie GL, Rozenski J, Madder A, Martins JC, De Mot R.	PLoS One	10.1371/journal.pone.0062946	2013
Enzymology	Derepression of arylsulfatase synthesis in Aerobacter aerogenes by tyramine.	Adachi T, Murooka Y, Harada T.	J Bacteriol	10.1128/jb.116.1.19-24.1973	1973
	Streptomyces cynarae sp. nov., a novel actinomycete isolated from the leaves of Cynara scolymus L.	Deng A, Luo Y, Wu C, Chen D, Mo P, Li B.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01885-2	2023
	Sulfitobacter pontiacus subsp. fungiae subsp. nov., Isolated from Coral Fungia seychellensis from Andaman Sea, and Description of Sulfitobacter pontiacus subsp. pontiacus subsp. nov.	Zachariah S, Kumari P, Das SK.	Curr Microbiol	10.1007/s00284-017-1200-7	2017
Phylogeny	Thermomonas carbonis sp. nov., isolated from the soil of a coal mine.	Wang L, Zheng S, Wang D, Wang L, Wang G.	Int J Syst Evol Microbiol	10.1099/ijs.0.063800-0	2014
Phylogeny	Devriesea agamarum gen. nov., sp. nov., a novel actinobacterium associated with dermatitis and septicaemia in agamid lizards.	Martel A, Pasmans F, Hellebuyck T, Haesebrouck F, Vandamme P.	Int J Syst Evol Microbiol	10.1099/ijs.0.65478-0	2008
	Niabella beijingensis sp. nov. and Thermomonas beijingensis sp. nov., two bacteria from constructed wetland.	Guo SZ, Wu T, Zhu HZ, Yan L, Liu ZP, Li DF, Jiang CY, Liu SJ, Shen XH.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005280	2022
Phylogeny	Thermomonas koreensis sp. nov., a mesophilic bacterium isolated from a ginseng field.	Kim MK, Im WT, In JG, Kim SH, Yang DC.	Int J Syst Evol Microbiol	10.1099/ijs.0.64049-0	2006
Phylogeny	Vibrio aerogenes sp. nov., a facultatively anaerobic marine bacterium that ferments glucose with gas production.	Shieh WY, Chen AL, Chiu HH	Int J Syst Evol Microbiol	10.1099/00207713-50-1-321	2000

References

#5354	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14438
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33928	; Curators of the CIP;
#55948	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43576
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#116068	Collection of Institut Pasteur ; Curators of the CIP; CIP 108258
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio aerogenes (DSM 14438, ATCC 700797, CCRC 17041)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

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API 20E

API zym

API 20NE

API biotype100

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