Name: Vibrio penaeicida KH-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17290

Type strain:

Species: Vibrio penaeicida

Strain Designation: KH-1

Culture col. no.: DSM 14398, IFO 15640, JCM 9123, NBRC 15640, ATCC 51841, CAIM 285, CIP 104417, LMG 19663

Strain history: K. Muroga KH-1 <-- K. Momoyama.

NCBI tax ID(s): 1123495 (strain), 104609 (species)

Other strains from Vibrio penaeicida

V. penaeicida JCM 9124
V. penaeicida JCM 9125

Section

Vibrio penaeicida KH-1 is a mesophilic animal pathogen that was isolated from kuruma prawns .

animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio penaeicida**
	Full Scientific Name (PNU)	Vibrio penaeicida Ishimaru et al. 1995

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5335]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5335]

Culture medium growth

[Ref.: #5335]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5335]

Culture medium composition

expand / minimize

[Ref.: #40146]

Culture medium

Marine agar (MA)

[Ref.: #40146]

Culture medium growth

[Ref.: #40146]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5335]	growth	28 °C
[Ref.: #40146]	growth	22 °C
[Ref.: #67770]	growth	26 °C

[Ref.: #5335]	Temperature range	mesophilic
[Ref.: #40146]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68368]	indole ChEBI	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #5335]	13996	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5335]	Sample type/isolated from	kuruma prawns (Penaeus japonicus)
[Ref.: #5335]	Host species	Penaeus japonicus
[Ref.: #5335]	Country	Japan
[Ref.: #5335]	Country ISO 3 Code	JPN
[Ref.: #5335]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Kuruma prawn (Penaeus japonicus)
[Ref.: #67770]	Host species	Penaeus japonicus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kagoshima Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Crustacea

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5335]	Pathogenicity (animal)	yes
[Ref.: #5335]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Vibrio penaeicida 16S rRNA gene, strain DSM 14398T	AJ421444	1504	ENA	104609 tax ID	*
[Ref.: #20218]	Vibrio penaeicida partial 16S rRNA gene, strain LMG 19663T	AJ437191	1493	ENA	104609 tax ID	*
[Ref.: #20218]	Vibrio penaeicida gene for 16S rRNA, partial sequence, strain: NBRC 15640	AB680926	1466	ENA	104609 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Vibrio penaeicida CAIM 285	GCA_003970425	scaffold	GenBank	104609 tax ID
[Ref.: #66792]	Vibrio penaeicida IFO 15640	GCA_019977755	complete	GenBank	104609 tax ID	*
[Ref.: #66792]	Vibrio penaeicida strain CAIM 285	104609.6	wgs	PATRIC	104609 tax ID	*
[Ref.: #66792]	Vibrio penaeicida strain IFO 15640 strain IFO 15640T	104609.11	wgs	PATRIC	104609 tax ID	*
[Ref.: #66792]	Vibrio penaeicida strain IFO 15640 strain IFO 15640T	104609.26	wgs	PATRIC	104609 tax ID	*
[Ref.: #66792]	Vibrio penaeicida strain IFO 15640 strain IFO 15640T	104609.16	wgs	PATRIC	104609 tax ID	*

Availability in culture collections External links

[Ref.: #5335]

Culture collection no.

DSM 14398, IFO 15640, JCM 9123, NBRC 15640, ATCC 51841, CAIM 285, CIP 104417, LMG 19663

[Ref.: #20218]

Associated Passport(s) in StrainInfo

163936, 48931, 48932, 335709

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genome analyses of five Vibrio penaeicida strains provide insights into their virulence-related factors.	Ragab W, Kawato S, Nozaki R, Kondo H, Hirono I	Microb Genom	10.1099/mgen.0.000766	2022	*
Phylogeny	Vibrio ulleungensis sp. nov., isolated from Mytilus coruscus.	Moon YL, Park JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005136	2021	*
Enzymology	Pathogenicity of Vibrio penaeicida for white shrimp Litopenaeus vannamei: a cysteine protease-like exotoxin as a virulence factor.	Aguirre-Guzman G, Ascencio F, Saulnier D	Dis Aquat Organ	10.3354/dao067201	2005	*

References

#5335

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14398

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40146 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

* These data were automatically processed and therefore are not curated

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