Information on genomic background e.g. entries in nucleic sequence databass Sequence information
16S Sequence information:
Only first 5 entries are displayed. Click here to see all. Click here to see only first 5 entries.
Sequence accession description
Seq. accession number
Sequence length (bp)
Sequence database
Associated NCBI tax ID
[Ref.: #3820]
V.vulnificus (ATCC 27562 T) 16S rRNA gene
X76333
1536
1219061 tax ID
[Ref.: #20218]
Vibrio vulnificus clone 01_A01 16S ribosomal RNA gene, partial sequence
EF546244
1363
672 tax ID
*
[Ref.: #20218]
Vibrio vulnificus clone 01_A03 16S ribosomal RNA gene, partial sequence
EF546245
1363
672 tax ID
*
[Ref.: #20218]
Vibrio vulnificus clone 01_A10 16S ribosomal RNA gene, partial sequence
EF546246
1363
672 tax ID
*
[Ref.: #20218]
Vibrio vulnificus clone 01_B09 16S ribosomal RNA gene, partial sequence
EF546247
1363
672 tax ID
*
[Ref.: #20218]
Vibrio vulnificus strain ATCC 27562 clone 01_A10 16S ribosomal RNA gene, partial sequence
HM996960
1363
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus strain ATCC 27562 clone 01_A01 16S ribosomal RNA gene, partial sequence
HM996963
1363
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence
KC768793
1361
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence
KC768825
644
1219061 tax ID
*
[Ref.: #20218]
16S rRNA [Vibrio vulnificus, ATCC 27562T, rRNA Partial, 23 nt, segment 3 of 3]
S83461
23
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus ATCC 27562 16S small subunit rRNA gene, partial sequence
U10862
939
1219061 tax ID
*
[Ref.: #20218]
V.vulnificus 16S ribosomal RNA
X56582
1474
1219061 tax ID
*
[Ref.: #20218]
V.vulnificus (ATCC 27562T) gene for 16S ribosomal RNA
X74726
1466
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1a, tRNA-Ala, partial and complete sequence
AB073875
498
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1b, tRNA-Glu, partial and complete sequence
AB073876
500
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-2, tRNA-Ile, tRNA-Ala, partial and complete sequence
AB073877
584
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-3, tRNA-Glu, tRNA-Lys, tRNA-Val, partial and complete sequence
AB073878
685
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-4, tRNA-Glu, tRNA-Lys, tRNA-Ala, tRNA-Val, partial and complete sequence
AB073879
818
1219061 tax ID
*
[Ref.: #20218]
Vibrio vulnificus gene for 16S rRNA, partial sequence, strain: NBRC 15645
AB680930
1468
1219061 tax ID
*
Availability in culture collections External links
[Ref.: #3820]
Culture collection no.
DSM 10143 , ATCC 27562 , WDCM 00139, JCM 3725 , BCRC 12905 , CAIM 610 , CCUG 13448 , CCUG 16394 , CDC 9107-79, CECT 529 , CGMCC 1.3751 , CIP 75.4 , IFO 15645 , KCTC 2959 , LMG 13545 , LMG 7898 , NBRC 15645 , NCIMB 2046, NRIC 0817
[Ref.: #20218]
Associated Passport(s) in StrainInfo
161852 , 22719 , 866238
Literature:
Only first 10 entries are displayed. Click here to see all. Click here to see only first 10 entries.
Topic
Title
Authors
Journal
DOI
Year
Metabolism
Evidence for the horizontal transfer of an unusual capsular polysaccharide biosynthesis locus in marine bacteria.
Nakhamchik A, Wilde C, Chong H, Rowe-Magnus DA
Infect Immun
10.1128/IAI.00653-10
2010
*
Biotechnology
Immunomagnetic separation of Vibrio vulnificus with antiflagellar monoclonal antibody.
Jadeja R, Janes ME, Simonson JG
J Food Prot
10.4315/0362-028x-73.7.1288
2010
*
Pathogenicity
Comparison of the effects of deferasirox, deferiprone, and deferoxamine on the growth and virulence of Vibrio vulnificus.
Neupane GP, Kim DM
Transfusion
10.1111/j.1537-2995.2009.02186.x
2009
*
Genetics
Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562.
Rusch DB, Rowe-Magnus DA
Genome Announc
10.1128/genomeA.00907-17
2017
*
Phylogeny
Prevalence, characteristics and ecology of Vibrio vulnificus found in New Zealand shellfish.
Cruz CD, Chycka M, Hedderley D, Fletcher GC
J Appl Microbiol
10.1111/jam.13064
2016
*
Metabolism
TLR2 and TLR4 mediate the TNFalpha response to Vibrio vulnificus biotype 1.
Stamm LV, Drapp RL
Pathog Dis
10.1111/2049-632X.12154
2014
*
Genetics
Genome sequence of the human-pathogenic bacterium Vibrio vulnificus type strain ATCC 27562.
Li Z, Chen H, Chen X, Zhou T, Zhao L, Zhang C, Jin W
J Bacteriol
10.1128/JB.01890-12
2012
*
Enzymology
[Development of an immunochromatographic strip test for rapid detection of Vibrio vulnificus].
Yan ZM, Zheng J, Chen Q, Shen H
Nan Fang Yi Ke Da Xue Xue Bao
2011
*
Genetics
High intragenomic heterogeneity of 16S rRNA genes in a subset of Vibrio vulnificus strains from the western Mediterranean coast.
Arias CR, Olivares-Fuster O, Goris J
Int Microbiol
10.2436/20.1501.01.124
2010
*
Pathogenicity
Role of TLR4 in the host response to Vibrio vulnificus, an emerging pathogen.
Stamm LV
FEMS Immunol Med Microbiol
10.1111/j.1574-695X.2009.00643.x
2009
*
Genetics
Integrase-directed recovery of functional genes from genomic libraries.
Rowe-Magnus DA
Nucleic Acids Res
10.1093/nar/gkp561
2009
*
Metabolism
Validation of a green fluorescent protein-labeled strain of Vibrio vulnificus for use in the evaluation of postharvest strategies for handling of raw oysters.
Drake SL, Elhanafi D, Bang W, Drake MA, Green DP, Jaykus LA
Appl Environ Microbiol
10.1128/AEM.01091-06
2006
*
Phylogeny
Cloning, sequencing and analysis of the 16S-23S rDNA intergenic spacers (IGSs) of two strains of Vibrio vulnificus.
Deng XY, Chen XY, Wang ZX, Ou P, He JG
Yi Chuan Xue Bao
10.1016/S0379-4172(06)60062-0
2006
*
Pathogenicity
Immunization with major outer membrane protein of Vibrio vulnificus elicits protective antibodies in a murine model.
Jung CR, Park MJ, Heo MS
J Microbiol
2278
2005
*
Pathogenicity
In vitro efficacy of the combination of ciprofloxacin and cefotaxime against Vibrio vulnificus.
Kim DM, Lym Y, Jang SJ, Han H, Kim YG, Chung CH, Hong SP
Antimicrob Agents Chemother
10.1128/AAC.49.8.3489-3491.2005
2005
*
Pathogenicity
Response of pathogenic Vibrio species to high hydrostatic pressure.
Berlin DL, Herson DS, Hicks DT, Hoover DG
Appl Environ Microbiol
10.1128/AEM.65.6.2776-2780.1999
1999
*
Enzymology
Structure of a muramic acid containing capsular polysaccharide from the pathogenic strain of Vibrio vulnificus ATCC 27562.
Gunawardena S, Reddy GP, Wang Y, Kolli VS, Orlando R, Morris JG, Bush CA
Carbohydr Res
10.1016/s0008-6215(98)00115-3
1998
*
Phylogeny
Molecular typing of Vibrio vulnificus isolates by random amplified polymorphic DNA (RAPD) analysis.
Ryang DW, Cho SW, Shin MG, Shin JH, Suh SP
Jpn J Med Sci Biol
10.7883/yoken1952.50.113
1997
*
Pathogenicity
Evidence for the presence of a capsule in Vibrio vulnificus.
Amako K, Okada K, Miake S
J Gen Microbiol
10.1099/00221287-130-10-2741
1984
*
Phylogeny
Vibrio vulnificus biogroup 2: new biogroup pathogenic for eels.
Tison DL, Nishibuchi M, Greenwood JD, Seidler RJ
Appl Environ Microbiol
10.1128/aem.44.3.640-646.1982
1982
*
Antibacterial Effect of Oregano Essential Oil against Vibrio vulnificus and Its Mechanism.
Luo K, Zhao P, He Y, Kang S, Shen C, Wang S, Guo M, Wang L, Shi C
Foods
10.3390/foods11030403
2022
*
Transcriptomic Analysis Reveals That Municipal Wastewater Effluent Enhances Vibrio vulnificus Growth and Virulence Potential.
Correa Velez KE, Norman RS
Front Microbiol
10.3389/fmicb.2021.754683
2021
*
References
#3820
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 10143
#41867
; Curators of the CIP;
#67770
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368
Automatically annotated from API 20E .
#68369
Automatically annotated from API 20NE .
* These data were automatically processed and therefore are not curated
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