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Information on genomic background e.g. entries in nucleic sequence databass
Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #3820] |
V.vulnificus (ATCC 27562 T) 16S rRNA gene |
X76333 |
1536 |
|
1219061 tax ID |
[Ref.: #20218] |
Vibrio vulnificus strain ATCC 27562 clone 01_A10 16S ribosomal RNA gene, partial sequence |
HM996960 |
1363 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus strain ATCC 27562 clone 01_A01 16S ribosomal RNA gene, partial sequence |
HM996963 |
1363 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence |
KC768793 |
1361 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence |
KC768825 |
644 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
16S rRNA [Vibrio vulnificus, ATCC 27562T, rRNA Partial, 23 nt, segment 3 of 3] |
S83461 |
23 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus ATCC 27562 16S small subunit rRNA gene, partial sequence |
U10862 |
939 |
|
1219061 tax ID |
* |
[Ref.: #124043] |
Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence. |
OQ147526 |
1056 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
V.vulnificus 16S ribosomal RNA |
X56582 |
1474 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
V.vulnificus (ATCC 27562T) gene for 16S ribosomal RNA |
X74726 |
1466 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1a, tRNA-Ala, partial and complete sequence |
AB073875 |
498 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1b, tRNA-Glu, partial and complete sequence |
AB073876 |
500 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-2, tRNA-Ile, tRNA-Ala, partial and complete sequence |
AB073877 |
584 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-3, tRNA-Glu, tRNA-Lys, tRNA-Val, partial and complete sequence |
AB073878 |
685 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-4, tRNA-Glu, tRNA-Lys, tRNA-Ala, tRNA-Val, partial and complete sequence |
AB073879 |
818 |
|
1219061 tax ID |
* |
[Ref.: #20218] |
Vibrio vulnificus gene for 16S rRNA, partial sequence, strain: NBRC 15645 |
AB680930 |
1468 |
|
1219061 tax ID |
* |
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Availability in culture collections
External links
[Ref.: #3820] |
Culture collection no. |
DSM 10143, ATCC 27562, WDCM 00139, JCM 3725, BCRC 12905, CAIM 610, CCUG 13448, CCUG 16394, CDC 9107-79, CECT 529, CGMCC 1.3751, CIP 75.4, IFO 15645, KCTC 2959, LMG 13545, LMG 7898, NBRC 15645, NCIMB 2046, NRIC 0817, NCTC 13647 |
[Ref.: #86275] |
SI-ID 5128
|
* |
[Ref.: #86276] |
SI-ID 312383
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* |
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Metabolism |
Evidence for the horizontal transfer of an unusual capsular polysaccharide biosynthesis locus in marine bacteria. |
Nakhamchik A, Wilde C, Chong H, Rowe-Magnus DA |
Infect Immun |
10.1128/IAI.00653-10 |
2010 |
* |
Biotechnology |
Immunomagnetic separation of Vibrio vulnificus with antiflagellar monoclonal antibody. |
Jadeja R, Janes ME, Simonson JG |
J Food Prot |
10.4315/0362-028x-73.7.1288 |
2010 |
* |
Pathogenicity |
Comparison of the effects of deferasirox, deferiprone, and deferoxamine on the growth and virulence of Vibrio vulnificus. |
Neupane GP, Kim DM |
Transfusion |
10.1111/j.1537-2995.2009.02186.x |
2009 |
* |
Genetics |
Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562. |
Rusch DB, Rowe-Magnus DA |
Genome Announc |
10.1128/genomeA.00907-17 |
2017 |
* |
Phylogeny |
Prevalence, characteristics and ecology of Vibrio vulnificus found in New Zealand shellfish. |
Cruz CD, Chycka M, Hedderley D, Fletcher GC |
J Appl Microbiol |
10.1111/jam.13064 |
2016 |
* |
Metabolism |
TLR2 and TLR4 mediate the TNFalpha response to Vibrio vulnificus biotype 1. |
Stamm LV, Drapp RL |
Pathog Dis |
10.1111/2049-632X.12154 |
2014 |
* |
Genetics |
Genome sequence of the human-pathogenic bacterium Vibrio vulnificus type strain ATCC 27562. |
Li Z, Chen H, Chen X, Zhou T, Zhao L, Zhang C, Jin W |
J Bacteriol |
10.1128/JB.01890-12 |
2012 |
* |
Enzymology |
[Development of an immunochromatographic strip test for rapid detection of Vibrio vulnificus]. |
Yan ZM, Zheng J, Chen Q, Shen H |
Nan Fang Yi Ke Da Xue Xue Bao |
|
2011 |
* |
Genetics |
High intragenomic heterogeneity of 16S rRNA genes in a subset of Vibrio vulnificus strains from the western Mediterranean coast. |
Arias CR, Olivares-Fuster O, Goris J |
Int Microbiol |
10.2436/20.1501.01.124 |
2010 |
* |
Pathogenicity |
Role of TLR4 in the host response to Vibrio vulnificus, an emerging pathogen. |
Stamm LV |
FEMS Immunol Med Microbiol |
10.1111/j.1574-695X.2009.00643.x |
2009 |
* |
Genetics |
Integrase-directed recovery of functional genes from genomic libraries. |
Rowe-Magnus DA |
Nucleic Acids Res |
10.1093/nar/gkp561 |
2009 |
* |
Metabolism |
Validation of a green fluorescent protein-labeled strain of Vibrio vulnificus for use in the evaluation of postharvest strategies for handling of raw oysters. |
Drake SL, Elhanafi D, Bang W, Drake MA, Green DP, Jaykus LA |
Appl Environ Microbiol |
10.1128/AEM.01091-06 |
2006 |
* |
Phylogeny |
Cloning, sequencing and analysis of the 16S-23S rDNA intergenic spacers (IGSs) of two strains of Vibrio vulnificus. |
Deng XY, Chen XY, Wang ZX, Ou P, He JG |
Yi Chuan Xue Bao |
10.1016/S0379-4172(06)60062-0 |
2006 |
* |
Pathogenicity |
Immunization with major outer membrane protein of Vibrio vulnificus elicits protective antibodies in a murine model. |
Jung CR, Park MJ, Heo MS |
J Microbiol |
2278 |
2005 |
* |
Pathogenicity |
In vitro efficacy of the combination of ciprofloxacin and cefotaxime against Vibrio vulnificus. |
Kim DM, Lym Y, Jang SJ, Han H, Kim YG, Chung CH, Hong SP |
Antimicrob Agents Chemother |
10.1128/AAC.49.8.3489-3491.2005 |
2005 |
* |
Pathogenicity |
Response of pathogenic Vibrio species to high hydrostatic pressure. |
Berlin DL, Herson DS, Hicks DT, Hoover DG |
Appl Environ Microbiol |
10.1128/AEM.65.6.2776-2780.1999 |
1999 |
* |
Enzymology |
Structure of a muramic acid containing capsular polysaccharide from the pathogenic strain of Vibrio vulnificus ATCC 27562. |
Gunawardena S, Reddy GP, Wang Y, Kolli VS, Orlando R, Morris JG, Bush CA |
Carbohydr Res |
10.1016/s0008-6215(98)00115-3 |
1998 |
* |
Phylogeny |
Molecular typing of Vibrio vulnificus isolates by random amplified polymorphic DNA (RAPD) analysis. |
Ryang DW, Cho SW, Shin MG, Shin JH, Suh SP |
Jpn J Med Sci Biol |
10.7883/yoken1952.50.113 |
1997 |
* |
Pathogenicity |
Evidence for the presence of a capsule in Vibrio vulnificus. |
Amako K, Okada K, Miake S |
J Gen Microbiol |
10.1099/00221287-130-10-2741 |
1984 |
* |
Phylogeny |
Vibrio vulnificus biogroup 2: new biogroup pathogenic for eels. |
Tison DL, Nishibuchi M, Greenwood JD, Seidler RJ |
Appl Environ Microbiol |
10.1128/aem.44.3.640-646.1982 |
1982 |
* |
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Antibacterial Effect of Oregano Essential Oil against Vibrio vulnificus and Its Mechanism. |
Luo K, Zhao P, He Y, Kang S, Shen C, Wang S, Guo M, Wang L, Shi C |
Foods |
10.3390/foods11030403 |
2022 |
* |
|
Transcriptomic Analysis Reveals That Municipal Wastewater Effluent Enhances Vibrio vulnificus Growth and Virulence Potential. |
Correa Velez KE, Norman RS |
Front Microbiol |
10.3389/fmicb.2021.754683 |
2021 |
* |
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References
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#3820 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 10143
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#41867 |
; Curators of the CIP;
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68368 |
Automatically annotated from API 20E .
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#68369 |
Automatically annotated from API 20NE .
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#68382 |
Automatically annotated from API zym .
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#86275 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID5128.1 )
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#86276 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID312383.1 )
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#123896 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 75.4
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#124043 |
Isabel Schober, Julia Koblitz:
Data extracted from sequence databases, automatically matched based on designation and taxonomy .
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- * These data were automatically processed and therefore are not curated
Change proposal
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