Name: Vibrio vulnificus 324
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17276

Type strain:

Species: Vibrio vulnificus

Strain Designation: 324

Culture col. no.: DSM 10143, ATCC 27562, WDCM 00139, JCM 3725, BCRC 12905, CAIM 610, CCUG 13448, CCUG 16394, CDC 9107-79, CECT 529, CGMCC 1.3751, CIP 75.4, IFO 15645, KCTC 2959, LMG 13545, LMG 7898, NBRC 15645, NCIMB 2046, NRIC 0817, NCTC 13647

Strain history: CIP <- 1975, M. Popoff, Inst. Pasteur, Paris, France <- J.L. Reichelt <- P. Baumann: strain 324 <- R.E. Weaver, CDC: strain 9107-79, group C2

NCBI tax ID(s): 1219061 (strain), 672 (species)

SI-ID 5128

LMG 7898, ATCC 27562, CCRC 12905, CCUG 13448, CCUG 16394, CECT 529, JCM 3725, LMG 13545, NCIMB 2046, NCMB 2046, IFO 15645, CIP 75.4, CIP 75.04, IMET 11292, KCTC 2959, NBRC 15645, BCRC 12905, CGMCC 1.1758, DSM 10143

Special Collections

Other strains from Vibrio vulnificus

Section

When using BacDive for research please cite our paper

Vibrio vulnificus 324 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from blood.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio vulnificus**
	Full Scientific Name (LPSN)	Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980

Synonym

Beneckea vulnifica

Information on morphological and physiological properties Morphology

[Ref.: #123896]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %100
[Ref.: #125439]	Gram stain	negative Confidence in %96.6

[Ref.: #123896]	Cell shape	rod-shaped

[Ref.: #123896]	Motility	yes
[Ref.: #125438]	Motility	yes Confidence in %90.402

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3820]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #3820]

Culture medium growth

[Ref.: #3820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3820]

Culture medium composition

expand / minimize

[Ref.: #41867]

Culture medium

Marine agar (MA)

[Ref.: #41867]

Culture medium growth

[Ref.: #41867]

Culture medium composition

expand / minimize

[Ref.: #3820]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #3820]

Culture medium growth

[Ref.: #3820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3820]

Culture medium composition

expand / minimize

[Ref.: #3820]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #3820]

Culture medium growth

[Ref.: #3820]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3820]

Culture medium composition

expand / minimize

[Ref.: #123896]

Culture medium

CIP Medium 13

[Ref.: #123896]

Culture medium growth

[Ref.: #123896]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3820]		growth	30 °C
[Ref.: #41867]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #123896]		growth	15-37 °C
[Ref.: #123896]	no	growth	5 °C
[Ref.: #123896]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123896]

Oxygen tolerance

facultative anaerobe

[Ref.: #125439]

Ability of spore formation

no Confidence in %98.8

[Ref.: #3820]

Name of produced compound

haemolysin

	Salt	Tested relation		Salt conc.
[Ref.: #123896]	NaCl		growth	2-4	%
[Ref.: #123896]	NaCl	no	growth	0	%
[Ref.: #123896]	NaCl	no	growth	6	%
[Ref.: #123896]	NaCl	no	growth	8	%
[Ref.: #123896]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE, API 20E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #123896]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE, API 20E
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #123896]	glucose ChEBI	+	fermentation
[Ref.: #123896]	glucose ChEBI	+	degradation
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #123896]	lactose ChEBI	-	fermentation
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #123896]	nitrate ChEBI	-	reduction
[Ref.: #123896]	nitrate ChEBI	+	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #123896]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #123896]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE, API 20E
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API 20E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123896]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite	Production
[Ref.: #123896]	indole ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68369]	indole ChEBI	yes	* from API 20NE, API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123896]	acetoin ChEBI	-
[Ref.: #123896]	glucose ChEBI		+
[Ref.: #68368]	acetoin ChEBI	-			* from API 20E
[Ref.: #68369]	indole ChEBI			+	* from API 20NE, API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123896]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123896]	amylase	+
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE, API 20E
[Ref.: #123896]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123896]	caseinase	+	3.4.21.50
[Ref.: #123896]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE, API 20E
[Ref.: #123896]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123896]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123896]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE, API 20E
[Ref.: #123896]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123896]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #123896]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123896]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #123896]	oxidase	+
[Ref.: #123896]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #123896]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123896]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #123896]	tween esterase	+
[Ref.: #123896]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #3820]	19834	+	-	+	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #3820]	19605	+	-	+	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #3820]	19379	+	-	+	+	+	-	-	-	+	-	+	+	-	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #3820]	18399	+	-	+	+	+	-	-	-	+	-	+	+	-	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #3820]	18259	+	-	+	+	-	-	-	-	+	-	+	+	-	-	-	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #3820]	26153	+	+	+	-	-	+	+	+	+	-	-	-	-	+	+	-	-	+	+	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123896]	3338	not determinedn.d.	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-	-	-	+	+	-	-	-	+	+	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123896]	13277	-	+	+	+	+	+	+	-	-	-	+	+	-	+	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3820]	Sample type/isolated from	blood

[Ref.: #67770]	Sample type/isolated from	Human blood
[Ref.: #67770]	Geographic location (country and/or sea, region)	FL
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #123896]	Sample type/isolated from	Blood
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3820]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123896]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3820]	V.vulnificus (ATCC 27562 T) 16S rRNA gene	X76333	1536	GenBank ENA	1219061 tax ID
[Ref.: #20218]	Vibrio vulnificus strain ATCC 27562 clone 01_A10 16S ribosomal RNA gene, partial sequence	HM996960	1363	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus strain ATCC 27562 clone 01_A01 16S ribosomal RNA gene, partial sequence	HM996963	1363	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence	KC768793	1361	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence	KC768825	644	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	16S rRNA [Vibrio vulnificus, ATCC 27562T, rRNA Partial, 23 nt, segment 3 of 3]	S83461	23	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus ATCC 27562 16S small subunit rRNA gene, partial sequence	U10862	939	GenBank ENA	1219061 tax ID	*
[Ref.: #124043]	Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence.	OQ147526	1056	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	V.vulnificus 16S ribosomal RNA	X56582	1474	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	V.vulnificus (ATCC 27562T) gene for 16S ribosomal RNA	X74726	1466	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1a, tRNA-Ala, partial and complete sequence	AB073875	498	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1b, tRNA-Glu, partial and complete sequence	AB073876	500	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-2, tRNA-Ile, tRNA-Ala, partial and complete sequence	AB073877	584	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-3, tRNA-Glu, tRNA-Lys, tRNA-Val, partial and complete sequence	AB073878	685	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-4, tRNA-Glu, tRNA-Lys, tRNA-Ala, tRNA-Val, partial and complete sequence	AB073879	818	GenBank ENA	1219061 tax ID	*
[Ref.: #20218]	Vibrio vulnificus gene for 16S rRNA, partial sequence, strain: NBRC 15645	AB680930	1468	GenBank ENA	1219061 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Vibrio vulnificus NBRC 15645 = ATCC 27562	GCA_000299635	contig	GenBank ENA	1219061 tax ID
[Ref.: #66792]	Vibrio vulnificus NBRC 15645 = ATCC 27562	GCA_001591065	contig	GenBank ENA	1219061 tax ID	*
[Ref.: #66792]	Vibrio vulnificus NBRC 15645 = ATCC 27562	1219061.25	wgs	PATRIC	1219061 tax ID	*
[Ref.: #66792]	Vibrio vulnificus NBRC 15645 = ATCC 27562	1219061.3	wgs	PATRIC	1219061 tax ID	*
[Ref.: #66792]	Vibrio vulnificus NBRC 15645 = ATCC 27562	1219061.29	complete	PATRIC	1219061 tax ID	*
[Ref.: #66792]	Vibrio vulnificus NBRC 15645	2675903639	draft	JGI IMG/M	1219061 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio vulnificus NBRC 15645 = ATCC 27562 ATCC 27562 NCBI: GCA_002224265.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.013	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	72.965	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.068	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.106	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	90.402	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio vulnificus NBRC 15645 = ATCC 27562 NCBI: GCA_002224265
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	87.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	96.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	69.2
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.8

Availability in culture collections External links

[Ref.: #3820]

Culture collection no.

DSM 10143, ATCC 27562, WDCM 00139, JCM 3725, BCRC 12905, CAIM 610, CCUG 13448, CCUG 16394, CDC 9107-79, CECT 529, CGMCC 1.3751, CIP 75.4, IFO 15645, KCTC 2959, LMG 13545, LMG 7898, NBRC 15645, NCIMB 2046, NRIC 0817, NCTC 13647

[Ref.: #86275]	SI-ID 5128	*
[Ref.: #86276]	SI-ID 312383	*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Evidence for the horizontal transfer of an unusual capsular polysaccharide biosynthesis locus in marine bacteria.	Nakhamchik A, Wilde C, Chong H, Rowe-Magnus DA	Infect Immun	10.1128/IAI.00653-10	2010	*
Biotechnology	Immunomagnetic separation of Vibrio vulnificus with antiflagellar monoclonal antibody.	Jadeja R, Janes ME, Simonson JG	J Food Prot	10.4315/0362-028x-73.7.1288	2010	*
Pathogenicity	Comparison of the effects of deferasirox, deferiprone, and deferoxamine on the growth and virulence of Vibrio vulnificus.	Neupane GP, Kim DM	Transfusion	10.1111/j.1537-2995.2009.02186.x	2009	*
Genetics	Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562.	Rusch DB, Rowe-Magnus DA	Genome Announc	10.1128/genomeA.00907-17	2017	*
Phylogeny	Prevalence, characteristics and ecology of Vibrio vulnificus found in New Zealand shellfish.	Cruz CD, Chycka M, Hedderley D, Fletcher GC	J Appl Microbiol	10.1111/jam.13064	2016	*
Metabolism	TLR2 and TLR4 mediate the TNFalpha response to Vibrio vulnificus biotype 1.	Stamm LV, Drapp RL	Pathog Dis	10.1111/2049-632X.12154	2014	*
Genetics	Genome sequence of the human-pathogenic bacterium Vibrio vulnificus type strain ATCC 27562.	Li Z, Chen H, Chen X, Zhou T, Zhao L, Zhang C, Jin W	J Bacteriol	10.1128/JB.01890-12	2012	*
Enzymology	[Development of an immunochromatographic strip test for rapid detection of Vibrio vulnificus].	Yan ZM, Zheng J, Chen Q, Shen H	Nan Fang Yi Ke Da Xue Xue Bao		2011	*
Genetics	High intragenomic heterogeneity of 16S rRNA genes in a subset of Vibrio vulnificus strains from the western Mediterranean coast.	Arias CR, Olivares-Fuster O, Goris J	Int Microbiol	10.2436/20.1501.01.124	2010	*
Pathogenicity	Role of TLR4 in the host response to Vibrio vulnificus, an emerging pathogen.	Stamm LV	FEMS Immunol Med Microbiol	10.1111/j.1574-695X.2009.00643.x	2009	*
Genetics	Integrase-directed recovery of functional genes from genomic libraries.	Rowe-Magnus DA	Nucleic Acids Res	10.1093/nar/gkp561	2009	*
Metabolism	Validation of a green fluorescent protein-labeled strain of Vibrio vulnificus for use in the evaluation of postharvest strategies for handling of raw oysters.	Drake SL, Elhanafi D, Bang W, Drake MA, Green DP, Jaykus LA	Appl Environ Microbiol	10.1128/AEM.01091-06	2006	*
Phylogeny	Cloning, sequencing and analysis of the 16S-23S rDNA intergenic spacers (IGSs) of two strains of Vibrio vulnificus.	Deng XY, Chen XY, Wang ZX, Ou P, He JG	Yi Chuan Xue Bao	10.1016/S0379-4172(06)60062-0	2006	*
Pathogenicity	Immunization with major outer membrane protein of Vibrio vulnificus elicits protective antibodies in a murine model.	Jung CR, Park MJ, Heo MS	J Microbiol	2278	2005	*
Pathogenicity	In vitro efficacy of the combination of ciprofloxacin and cefotaxime against Vibrio vulnificus.	Kim DM, Lym Y, Jang SJ, Han H, Kim YG, Chung CH, Hong SP	Antimicrob Agents Chemother	10.1128/AAC.49.8.3489-3491.2005	2005	*
Pathogenicity	Response of pathogenic Vibrio species to high hydrostatic pressure.	Berlin DL, Herson DS, Hicks DT, Hoover DG	Appl Environ Microbiol	10.1128/AEM.65.6.2776-2780.1999	1999	*
Enzymology	Structure of a muramic acid containing capsular polysaccharide from the pathogenic strain of Vibrio vulnificus ATCC 27562.	Gunawardena S, Reddy GP, Wang Y, Kolli VS, Orlando R, Morris JG, Bush CA	Carbohydr Res	10.1016/s0008-6215(98)00115-3	1998	*
Phylogeny	Molecular typing of Vibrio vulnificus isolates by random amplified polymorphic DNA (RAPD) analysis.	Ryang DW, Cho SW, Shin MG, Shin JH, Suh SP	Jpn J Med Sci Biol	10.7883/yoken1952.50.113	1997	*
Pathogenicity	Evidence for the presence of a capsule in Vibrio vulnificus.	Amako K, Okada K, Miake S	J Gen Microbiol	10.1099/00221287-130-10-2741	1984	*
Phylogeny	Vibrio vulnificus biogroup 2: new biogroup pathogenic for eels.	Tison DL, Nishibuchi M, Greenwood JD, Seidler RJ	Appl Environ Microbiol	10.1128/aem.44.3.640-646.1982	1982	*
	Antibacterial Effect of Oregano Essential Oil against Vibrio vulnificus and Its Mechanism.	Luo K, Zhao P, He Y, Kang S, Shen C, Wang S, Guo M, Wang L, Shi C	Foods	10.3390/foods11030403	2022	*
	Transcriptomic Analysis Reveals That Municipal Wastewater Effluent Enhances Vibrio vulnificus Growth and Virulence Potential.	Correa Velez KE, Norman RS	Front Microbiol	10.3389/fmicb.2021.754683	2021	*

References

#3820

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10143

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41867 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#86275

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5128.1 )

#86276

#123896 Collection of Institut Pasteur ; Curators of the CIP; CIP 75.4

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Vibrio vulnificus NBRC 15645 = ATCC 27562 ATCC 27562

Vibrio vulnificus NBRC 15645 = ATCC 27562

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