Vibrio vulnificus 324 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from blood.
Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order "Vibrionales" |
| Family Vibrionaceae |
| Genus Vibrio |
| Species Vibrio vulnificus |
| Full scientific name Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3820 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 41867 | Marine agar (MA) | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |||
| 3820 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 3820 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 123896 | CIP Medium 13 | Medium recipe at CIP |
| 123896 | Oxygen tolerancefacultative anaerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 98.8 |
| 3820 | Compoundhaemolysin |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68368 | 16899 ChEBI | D-mannitol | - | fermentation | from API 20E |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 123896 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68369 | 4853 ChEBI | esculin | + | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20NE |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 123896 | 17234 ChEBI | glucose | + | fermentation | |
| 123896 | 17234 ChEBI | glucose | + | degradation | |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68368 | 30849 ChEBI | L-arabinose | - | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 123896 | 17716 ChEBI | lactose | - | fermentation | |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 123896 | 17632 ChEBI | nitrate | - | reduction | |
| 123896 | 17632 ChEBI | nitrate | + | respiration | |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 123896 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 123896 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68369 | 27897 ChEBI | tryptophan | + | energy source | from API 20NE |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 123896 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 123896 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 123896 | amylase | + | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 123896 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | + | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 123896 | caseinase | + | 3.4.21.50 | |
| 123896 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 68368 | cytochrome oxidase | + | 1.9.3.1 | from API 20E |
| 123896 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 123896 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 123896 | gelatinase | + | ||
| 68369 | gelatinase | + | from API 20NE | |
| 68368 | gelatinase | + | from API 20E | |
| 123896 | lecithinase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 123896 | lipase | + | ||
| 68382 | lipase (C 14) | + | from API zym | |
| 123896 | lysine decarboxylase | + | 4.1.1.18 | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 123896 | ornithine decarboxylase | + | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 123896 | oxidase | + | ||
| 123896 | phenylalanine ammonia-lyase | + | 4.3.1.24 | |
| 123896 | protease | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123896 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 123896 | tween esterase | + | ||
| 123896 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM222426v1 assembly for Vibrio vulnificus NBRC 15645 = ATCC 27562 | complete | 1219061 | 98.62 | ||||
| 124043 | 34500_C01 assembly for Vibrio vulnificus NCTC13647 | contig | 672 | 76.05 | ||||
| 66792 | ASM159106v1 assembly for Vibrio vulnificus NBRC 15645 = ATCC 27562 | contig | 1219061 | 57.83 | ||||
| 67770 | ASM29963v1 assembly for Vibrio vulnificus NBRC 15645 = ATCC 27562 | contig | 1219061 | 27.56 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1a, tRNA-Ala, partial and complete sequence | AB073875 | 498 | 1219061 | ||
| 20218 | Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-1b, tRNA-Glu, partial and complete sequence | AB073876 | 500 | 1219061 | ||
| 20218 | Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-2, tRNA-Ile, tRNA-Ala, partial and complete sequence | AB073877 | 584 | 1219061 | ||
| 20218 | Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-3, tRNA-Glu, tRNA-Lys, tRNA-Val, partial and complete sequence | AB073878 | 685 | 1219061 | ||
| 20218 | Vibrio vulnificus DNA, 16S-23S intergenic spacer region ISR-4, tRNA-Glu, tRNA-Lys, tRNA-Ala, tRNA-Val, partial and complete sequence | AB073879 | 818 | 1219061 | ||
| 20218 | Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence | KC768793 | 1361 | 1219061 | ||
| 20218 | Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence | KC768825 | 644 | 1219061 | ||
| 20218 | 16S rRNA [Vibrio vulnificus, ATCC 27562T, rRNA Partial, 23 nt, segment 3 of 3] | S83461 | 23 | 1219061 | ||
| 20218 | Vibrio vulnificus ATCC 27562 16S small subunit rRNA gene, partial sequence | U10862 | 939 | 1219061 | ||
| 20218 | V.vulnificus 16S ribosomal RNA | X56582 | 1474 | 1219061 | ||
| 20218 | V.vulnificus (ATCC 27562T) gene for 16S ribosomal RNA | X74726 | 1466 | 1219061 | ||
| 20218 | Vibrio vulnificus gene for 16S rRNA, partial sequence, strain: NBRC 15645 | AB680930 | 1468 | 1219061 | ||
| 3820 | V.vulnificus (ATCC 27562 T) 16S rRNA gene | X76333 | 1536 | 1219061 | ||
| 124043 | Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence. | OQ147526 | 1056 | 1219061 | ||
| 124043 | Vibrio vulnificus NBRC 15645 = ATCC 27562 16S ribosomal RNA gene, partial sequence. | MG722660 | 401 | 1219061 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 87.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 96.60 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 69.20 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.01 | no |
| 125438 | aerobic | aerobicⓘ | no | 72.97 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 88.07 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.11 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 90.40 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Preliminary study on the antimicrobial susceptibility pattern related to the genotype of Vibrio vulnificus strains isolated in the north-western Adriatic Sea coastal area. | Serratore P, Zavatta E, Fiocchi E, Serafini E, Serraino A, Giacometti F, Bignami G. | Ital J Food Saf | 10.4081/ijfs.2017.6843 | 2017 | |
| Limpet (Scutellastra cochlear) Recovered From Some Estuaries in the Eastern Cape Province, South Africa Act as Reservoirs of Pathogenic Vibrio Species. | Abioye OE, Okoh AI. | Front Public Health | 10.3389/fpubh.2018.00237 | 2018 | ||
| Phylogeny | Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics. | Kim HJ, Ryu JO, Lee SY, Kim ES, Kim HY. | BMC Microbiol | 10.1186/s12866-015-0577-3 | 2015 | |
| Molecular Detection and Distribution of Six Medically Important Vibrio spp. in Selected Freshwater and Brackish Water Resources in Eastern Cape Province, South Africa. | Abioye OE, Osunla AC, Okoh AI. | Front Microbiol | 10.3389/fmicb.2021.617703 | 2021 | ||
| Virulence and Antibiotic Resistance Characteristics of Vibrio Isolates From Rustic Environmental Freshwaters. | Gxalo O, Digban TO, Igere BE, Olapade OA, Okoh AI, Nwodo UU. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.732001 | 2021 | ||
| Bacterial Abundance and Community Composition in Pond Water From Shrimp Aquaculture Systems With Different Stocking Densities. | Alfiansah YR, Hassenruck C, Kunzmann A, Taslihan A, Harder J, Gardes A. | Front Microbiol | 10.3389/fmicb.2018.02457 | 2018 | ||
| Transcriptome | Identification and Characterization of a Novel GAPDH-Derived Antimicrobial Peptide From Jellyfish. | Liu J, Li A, Li Y, Li J, Geng X, Wan J, Lu Q, Wang Q, Wang M, Yang J. | J Pept Sci | 10.1002/psc.70011 | 2025 | |
| New drug target identification in Vibrio vulnificus by subtractive genome analysis and their inhibitors through molecular docking and molecular dynamics simulations | Alotaibi BS, Ajmal A, Hakami MA, Mahmood A, Wadood A, Hu J. | Heliyon. | 2023 | |||
| Seasonal variability, antibiogram and genetic diversity of Vibrio spp. recovered from effluent discharge of wastewater treatment plants and their receiving rivers in Durban, South Africa. | Ramessar K, Olaniran AO. | Environ Monit Assess | 10.1007/s10661-025-14171-7 | 2025 | ||
| Genetics | New drug target identification in Vibrio vulnificus by subtractive genome analysis and their inhibitors through molecular docking and molecular dynamics simulations. | Alotaibi BS, Ajmal A, Hakami MA, Mahmood A, Wadood A, Hu J. | Heliyon | 10.1016/j.heliyon.2023.e17650 | 2023 | |
| A Novel RAA Combined Test Strip Method Based on Dual Gene Targets for Pathogenic Vibrio vulnificus in Aquatic Products. | Liu W, Zhang G, Xu D, Ye J, Lu Y. | Foods | 10.3390/foods12193605 | 2023 | ||
| Genetics | In vivo examination of pathogenicity and virulence in environmentally isolated Vibrio vulnificus. | Pipes SE, Lovell CR, Kathrein KL. | Microbiologyopen | 10.1002/mbo3.1427 | 2024 | |
| Function of lamp2 Gene Response to Vibrio vulnificus Infection and LPS Stimulation in the Half-Smooth Tongue Sole (Cynoglossus semilaevis). | Han T, Liu Y, Li M, Zhang Y, He Z, Ren Y, Cao W, Ren J, Wang Y, Wang G, Gong C, Hou J. | Int J Mol Sci | 10.3390/ijms26051999 | 2025 | ||
| Draft genome sequence of Vibrio vulnificus H1828/94, a clinical isolate of multidrug-resistant emerging pathogenic isolates. | Herlemann DPR, Kisand V. | New Microbes New Infect | 10.1016/j.nmni.2022.101025 | 2022 | ||
| Genetics | Hybridization capture sequencing for Vibrio spp. and associated virulence factors. | Brumfield KD, Enke S, Swan BK, Carrasquilla L, Lee MD, Stern DB, Gieser L, Hasan NA, Usmani M, Jutla AS, Huq A, Caviness K, Goodrich JS, Bull R, Colwell RR. | mBio | 10.1128/mbio.00516-25 | 2025 | |
| NIR-responsive tissue-adaptive hydrogel for accelerating healing of seawater-immersed wounds. | Ma R, Xu L, Li Z, Li S, Liu Y, Qu G, Chen K, Chen C, Huang L, Teng Y, Huang X, Yang S, Li Q, Huang J, Ren J, Wu X. | Mater Today Bio | 10.1016/j.mtbio.2025.101915 | 2025 | ||
| Antimicrobial Blue Light for Prevention and Treatment of Highly Invasive Vibrio vulnificus Burn Infection in Mice. | Dos Anjos C, Leanse LG, Liu X, Miranda HV, Anderson RR, Dai T. | Front Microbiol | 10.3389/fmicb.2022.932466 | 2022 | ||
| Genetics | Genomic Insight into Zoonotic and Environmental Vibrio vulnificus: Strains with T3SS2 as a Novel Threat to Public Health. | Ma LC, Li M, Chen YM, Chen WY, Chen YW, Cheng ZL, Zhu YZ, Zhang Y, Guo XK, Liu C. | Microorganisms | 10.3390/microorganisms12112375 | 2024 | |
| Genetics | Genome sequence and pathogenicity of Vibrio vulnificus strain MCCC 1A08743 isolated from contaminated prawns. | Li J, Zhu Y, Ma Z, Yang F. | Biol Open | 10.1242/bio.059299 | 2022 | |
| Phylogeny | Virulent properties and genomic diversity of Vibrio vulnificus isolated from environment, human, diseased fish. | Naknaen A, Surachat K, Manit J, Jetwanna KW-n, Thawonsuwan J, Pomwised R. | Microbiol Spectr | 10.1128/spectrum.00079-24 | 2024 | |
| Spatio-genetically coordinated TPR domain-containing proteins modulate c-di-GMP signaling in Vibrio vulnificus. | Mustaree S, Podicheti R, Rusch D, Rowe-Magnus DA. | PLoS Pathog | 10.1371/journal.ppat.1013353 | 2025 | ||
| Antibiotic resistance trends among Vibrio vulnificus and Vibrio parahaemolyticus isolated from the Chesapeake Bay, Maryland: a longitudinal study. | Morgado ME, Brumfield KD, Chattopadhyay S, Malayil L, Alawode T, Amokeodo I, He X, Huq A, Colwell RR, Sapkota AR. | Appl Environ Microbiol | 10.1128/aem.00539-24 | 2024 | ||
| Analyzing Possible Native Functions of the Quinolone Resistance Gene qnr in Vibrio vulnificus. | Gil-Marques ML, Jacoby GA, Hooper DC. | Antimicrob Agents Chemother | 10.1128/aac.00232-21 | 2021 | ||
| Genetics | Genome analysis of clinical genotype Vibrio vulnificus isolated from seafood in Mangaluru Coast, India provides insights into its pathogenicity. | Prithvisagar KS, Gollapalli P, D'Souza C, Rai P, Karunasagar I, Karunasagar I, Ballamoole KK. | Vet Q | 10.1080/01652176.2023.2240389 | 2023 | |
| Antibacterial activity against pathogenic Vibrio and cytotoxicity on human hepatocyte of nano-silver prepared by polysaccharide-protein complexes. | He P, Wang W, Jian W. | Front Microbiol | 10.3389/fmicb.2024.1416844 | 2024 | ||
| Modeling pH and Temperature Effects as Climatic Hazards in Vibrio Vulnificus and Vibrio Parahaemolyticus Planktonic Growth and Biofilm Formation. | Velez KEC, Leighton RE, Decho AW, Pinckney JL, Norman RS. | Geohealth | 10.1029/2022gh000769 | 2023 | ||
| CRISPR/Cas12a combined with recombinase polymerase amplification for rapid and sensitive detection of Vibrio vulnificus in one tube. | Zhang X, Guo B, Yang L, Zhao C, Wang Y, Tang Y, Yang G, Wang P, Gao S. | Acta Biochim Biophys Sin (Shanghai) | 10.3724/abbs.2023013 | 2023 | ||
| Development, physicochemical characterization, and antimicrobial evaluation of niosome-loaded oregano essential oil against fish-borne pathogens. | Sirati R, Khajehrahimi AE, Kazempoor R, Kakoolaki S, Ghorbanzadeh A. | Heliyon | 10.1016/j.heliyon.2024.e26486 | 2024 | ||
| Phylogeny | Distribution, Phylogeny and Evolution of Clinical and Environmental Vibrio vulnificus Antibiotic-Resistant Genes. | Geng N, Sun G, Liu WJ, Gao BC, Sun C, Xu C, Hua E, Xu L. | Evol Bioinform Online | 10.1177/11769343221134400 | 2022 | |
| Eutypellaolides A-J, Sesquiterpene diversity expansion of the polar fungus Eutypella sp. D-1. | Ning Z, Hu B, Sun YY, Ding JF, Han XY, Lu XL, Yin ZF, He Y, Jiao BH, Yu HB, Liu XY. | Front Microbiol | 10.3389/fmicb.2024.1349151 | 2024 | ||
| Environmental Factors Influencing Occurrence of Vibrio parahaemolyticus and Vibrio vulnificus. | Brumfield KD, Chen AJ, Gangwar M, Usmani M, Hasan NA, Jutla AS, Huq A, Colwell RR. | Appl Environ Microbiol | 10.1128/aem.00307-23 | 2023 | ||
| Rapid and Sensitive Detection of Vibrio vulnificus Using CRISPR/Cas12a Combined With a Recombinase-Aided Amplification Assay. | Xiao X, Lin Z, Huang X, Lu J, Zhou Y, Zheng L, Lou Y. | Front Microbiol | 10.3389/fmicb.2021.767315 | 2021 | ||
| Antimicrobial Efficacy of Trifluoro-Anilines Against Vibrio Species. | Sathiyamoorthi E, Boya BR, Lee JH, Lee J. | Int J Mol Sci | 10.3390/ijms26020623 | 2025 | ||
| A Colorimetric/Fluorescent Dual-Mode Aptasensor for Salmonella Based on the Magnetic Separation of Aptamers and a DNA-Nanotriangle Programmed Multivalent Aptamer. | Ma N, Sun M, Shi H, Xue L, Zhang M, Yang W, Dang Y, Qiao Z. | Foods | 10.3390/foods12203853 | 2023 | ||
| Genetics | Genomic diversity of Vibrio spp. and metagenomic analysis of pathogens in Florida Gulf coastal waters following Hurricane Ian. | Brumfield KD, Usmani M, Santiago S, Singh K, Gangwar M, Hasan NA, Netherland M, Deliz K, Angelini C, Beatty NL, Huq A, Jutla AS, Colwell RR. | mBio | 10.1128/mbio.01476-23 | 2023 | |
| Detection of Clostridium perfringens Using Novel Methods Based on Recombinase-Aided Amplification Assay-Assisted CRISPR/Cas12a System. | Xiao X, Zhang Q, Wu S, Li Y, Zhong Z, Guo Q, Li J, Meng Q, Cheng Z, Duan J, Wang X, He H, Bai J, Lou Y. | Transbound Emerg Dis | 10.1155/2023/6667618 | 2023 | ||
| Biotechnology | A ddPCR method for simultaneous detection and quantification of Salmonella enterica, Staphylococcus aureus, Listeria monocytogenes, and Bacillus cereus in foods | Sun X, Xiao J, Wei H, Chen K, Liang M, Huang Z, Lao J, Lin X, Zeng S. | Sci Rep | 2025 | ||
| Development of Multienzyme Isothermal Rapid Amplification (MIRA) Combined with Lateral-Flow Dipstick (LFD) Assay to Detect Species-Specific tlh and Pathogenic trh and tdh Genes of Vibrio parahaemolyticus. | Park SB, Zhang Y. | Pathogens | 10.3390/pathogens13010057 | 2024 | ||
| Structure, Function, and Regulation of the Essential Virulence Factor Capsular Polysaccharide of Vibrio vulnificus. | Pettis GS, Mukerji AS. | Int J Mol Sci | 10.3390/ijms21093259 | 2020 | ||
| Argonaute combined with isothermal amplification for simultaneous detection of Vibrio parahaemolyticus and the tetracycline resistance gene tetA in water and food samples | Zhou H, Yang J, Xue F, Shen W, Cheng Y, Liu X. | Curr Res Food Sci | 2025 | |||
| Method for Specific Identification of the Emerging Zoonotic Pathogen Vibrio vulnificus Lineage 3 (Formerly Biotype 3). | Carmona-Salido H, Bisharat N, Amaro C. | J Clin Microbiol | 10.1128/jcm.01763-20 | 2021 | ||
| Cold shock induces chromosomal qnr in Vibrio species and plasmid-mediated qnrS1 in Escherichia coli. | Jang HC, Wang Y, Chen C, Vinue L, Jacoby GA, Hooper DC. | Antimicrob Agents Chemother | 10.1128/aac.01472-19 | 2019 | ||
| The Detection of Foodborne Pathogenic Bacteria in Seafood Using a Multiplex Polymerase Chain Reaction System. | Li P, Feng X, Chen B, Wang X, Liang Z, Wang L. | Foods | 10.3390/foods11233909 | 2022 | ||
| Enzymology | The Crystal Structure of Engineered Nitroreductase NTR 2.0 and Impact of F70A and F108Y Substitutions on Substrate Specificity. | Sharrock AV, Mumm JS, Bagdziunas G, Cenas N, Arcus VL, Ackerley DF. | Int J Mol Sci | 10.3390/ijms24076633 | 2023 | |
| Enzymology | Duplex On-Site Detection of Vibrio cholerae and Vibrio vulnificus by Recombinase Polymerase Amplification and Three-Segment Lateral Flow Strips. | Wang P, Liao L, Ma C, Zhang X, Yu J, Yi L, Liu X, Shen H, Gao S, Lu Q. | Biosensors (Basel) | 10.3390/bios11050151 | 2021 | |
| Metabolism | RRSP and RID Effector Domains Dominate the Virulence Impact of Vibrio vulnificus MARTX Toxin. | Gavin HE, Satchell KJF. | J Infect Dis | 10.1093/infdis/jiy590 | 2019 | |
| Isolation and Characterization of Infection of Four New Bacteriophages Infecting a Vibrio parahaemolyticus Strain. | Duarte J, Trindade D, Oliveira V, Gomes NCM, Calado R, Pereira C, Almeida A. | Antibiotics (Basel) | 10.3390/antibiotics13111086 | 2024 | ||
| A Novel Cooperative Metallo-beta-Lactamase Fold Metallohydrolase from Pathogen Vibrio vulnificus Exhibits beta-Lactam Antibiotic-Degrading Activities. | Lu WJ, Hsu PH, Lin HV. | Antimicrob Agents Chemother | 10.1128/aac.00326-21 | 2021 | ||
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| Phylogeny | Genetic relatedness among environmental, clinical, and diseased-eel Vibrio vulnificus isolates from different geographic regions by ribotyping and randomly amplified polymorphic DNA PCR. | Arias CR, Pujalte MJ, Garay E, Aznar R. | Appl Environ Microbiol | 10.1128/aem.64.9.3403-3410.1998 | 1998 | |
| Presence of a capsule in Vibrio vulnificus biotype 2 and its relationship to virulence for eels. | Biosca EG, Llorens H, Garay E, Amaro C. | Infect Immun | 10.1128/iai.61.5.1611-1618.1993 | 1993 | ||
| Enzymology | New selective plating medium for isolation of Vibrio vulnificus biogroup 1. | Brayton PR, West PA, Russek E, Colwell RR. | J Clin Microbiol | 10.1128/jcm.17.6.1039-1044.1983 | 1983 | |
| Phylogeny | Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. | Kent AD, Smith DJ, Benson BJ, Triplett EW. | Appl Environ Microbiol | 10.1128/aem.69.11.6768-6776.2003 | 2003 | |
| Enzymology | Occurrence of Vibrio vulnificus biotypes in Danish marine environments. | Hoi L, Larsen JL, Dalsgaard I, Dalsgaard A. | Appl Environ Microbiol | 10.1128/aem.64.1.7-13.1998 | 1998 | |
| Enzymology | Demonstration of a common antigen in sonicated cells for identification of Vibrio vulnificus serotypes. | Nishibuchi M, Seidler RJ. | J Clin Microbiol | 10.1128/jcm.21.1.97-101.1985 | 1985 | |
| Cultivation | Use of sodium dodecyl sulfate-polymyxin B-sucrose medium for isolation of Vibrio vulnificus from shellfish. | Bryant RG, Jarvis J, Janda JM. | Appl Environ Microbiol | 10.1128/aem.53.7.1556-1559.1987 | 1987 | |
| Enzymology | Comparison of conventional, nested, and real-time quantitative PCR for diagnosis of scrub typhus. | Kim DM, Park G, Kim HS, Lee JY, Neupane GP, Graves S, Stenos J. | J Clin Microbiol | 10.1128/jcm.01216-09 | 2011 | |
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| Enzymology | Development of a direct in situ PCR method for detection of specific bacteria in natural environments. | Tani K, Kurokawa K, Nasu M. | Appl Environ Microbiol | 10.1128/aem.64.4.1536-1540.1998 | 1998 | |
| Phylogeny | Seasonality of Chesapeake Bay bacterioplankton species. | Heidelberg JF, Heidelberg KB, Colwell RR. | Appl Environ Microbiol | 10.1128/aem.68.11.5488-5497.2002 | 2002 | |
| Enzymology | Detection of specific bacterial cells with 2-hydroxy-3-naphthoic acid-2'-phenylanilide phosphate and fast red TR in situ hybridization. | Yamaguchi N, Inaoka S, Tani K, Kenzaka T, Nasu M. | Appl Environ Microbiol | 10.1128/aem.62.1.275-278.1996 | 1996 | |
| Phylogeny | Influence of environmental gradients on the abundance and distribution of Mycobacterium spp. in a coastal lagoon estuary. | Jacobs J, Rhodes M, Sturgis B, Wood B. | Appl Environ Microbiol | 10.1128/aem.01900-09 | 2009 | |
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| Metabolism | TaqMan PCR for detection of Vibrio cholerae O1, O139, non-O1, and non-O139 in pure cultures, raw oysters, and synthetic seawater. | Lyon WJ. | Appl Environ Microbiol | 10.1128/aem.67.10.4685-4693.2001 | 2001 | |
| Coagglutination of Vibrio cholerae, Vibrio mimicus, and Vibrio vulnificus with anti-flagellar monoclonal antibody. | Simonson JG, Siebeling RJ. | J Clin Microbiol | 10.1128/jcm.26.10.1962-1966.1988 | 1988 | ||
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| Modified medium for the oxidation-fermentation test in the identification of marine bacteria. | Lemos ML, Toranzo AE, Barja JL. | Appl Environ Microbiol | 10.1128/aem.49.6.1541-1543.1985 | 1985 | ||
| Enzymology | Occurrence and distribution of halophilic vibrios in subtropical coastal waters of Hong Kong. | Chan KY, Woo ML, Lo KW, French GL. | Appl Environ Microbiol | 10.1128/aem.52.6.1407-1411.1986 | 1986 | |
| Enzymology | PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. | Wang RF, Cao WW, Cerniglia CE. | Appl Environ Microbiol | 10.1128/aem.62.4.1242-1247.1996 | 1996 | |
| Phylogeny | Ribotypes and plasmid contents of Vibrio anguillarum strains in relation to serovar. | Olsen JE, Larsen JL. | Appl Environ Microbiol | 10.1128/aem.59.11.3863-3870.1993 | 1993 | |
| Phylogeny | Numerical taxonomy of phenanthrene-degrading bacteria isolated from the Chesapeake Bay. | West PA, Okpokwasili GC, Brayton PR, Grimes DJ, Colwell RR. | Appl Environ Microbiol | 10.1128/aem.48.5.988-993.1984 | 1984 | |
| Occurrence and characteristics of agglutination of Vibrio cholerae by serum from the eastern oyster, Crassostrea virginica. | Tamplin ML, Fisher WS. | Appl Environ Microbiol | 10.1128/aem.55.11.2882-2887.1989 | 1989 | ||
| Phylogeny | Specific detection and confirmation of Campylobacter jejuni by DNA hybridization and PCR. | Ng LK, Kingombe CI, Yan W, Taylor DE, Hiratsuka K, Malik N, Garcia MM. | Appl Environ Microbiol | 10.1128/aem.63.11.4558-4563.1997 | 1997 | |
| Metabolism | Induction of melanin biosynthesis in Vibrio cholerae. | Coyne VE, al-Harthi L. | Appl Environ Microbiol | 10.1128/aem.58.9.2861-2865.1992 | 1992 | |
| Enzymology | Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis), a new species isolated from human feces and the environment. | Brenner DJ, Hickman-Brenner FW, Lee JV, Steigerwalt AG, Fanning GR, Hollis DG, Farmer JJ, Weaver RE, Joseph SW, Seidler RJ. | J Clin Microbiol | 10.1128/jcm.18.4.816-824.1983 | 1983 | |
| Compilation of 5S rRNA and 5S rRNA gene sequences. | Specht T, Wolters J, Erdmann VA. | Nucleic Acids Res | 10.1093/nar/18.suppl.2215 | 1990 | ||
| Enzymology | Direct detection of Salmonella spp. in estuaries by using a DNA probe. | Knight IT, Shults S, Kaspar CW, Colwell RR. | Appl Environ Microbiol | 10.1128/aem.56.4.1059-1066.1990 | 1990 | |
| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | ||
| Pathogenicity | Bacillus cereus Response to a Proanthocyanidin Trimer, a Transcriptional and Functional Analysis. | Tamura T, Ozawa M, Tanaka N, Arai S, Mura K. | Curr Microbiol | 10.1007/s00284-016-1032-x | 2016 | |
| Discovery on Antibiotic Resistance Patterns of Vibrio parahaemolyticus in Selangor Reveals Carbapenemase Producing Vibrio parahaemolyticus in Marine and Freshwater Fish. | Lee LH, Ab Mutalib NS, Law JW, Wong SH, Letchumanan V. | Front Microbiol | 10.3389/fmicb.2018.02513 | 2018 | ||
| Neisseria meningitidis has acquired sequences within the capsule locus by horizontal genetic transfer. | Clemence MEA, Harrison OB, Maiden MCJ. | Wellcome Open Res | 10.12688/wellcomeopenres.15333.2 | 2019 | ||
| Bacillus spp. Inhibit Edwardsiella tarda Quorum-Sensing and Fish Infection. | Santos RA, Monteiro M, Rangel F, Jerusik R, Saavedra MJ, Carvalho AP, Oliva-Teles A, Serra CR. | Mar Drugs | 10.3390/md19110602 | 2021 | ||
| Pathogenicity | Antimicrobial Activity of Divaricatic Acid Isolated from the Lichen Evernia mesomorpha against Methicillin-Resistant Staphylococcus aureus. | Oh JM, Kim YJ, Gang HS, Han J, Ha HH, Kim H. | Molecules | 10.3390/molecules23123068 | 2018 | |
| Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons. | Cambray G, Sanchez-Alberola N, Campoy S, Guerin E, Da Re S, Gonzalez-Zorn B, Ploy MC, Barbe J, Mazel D, Erill I. | Mob DNA | 10.1186/1759-8753-2-6 | 2011 | ||
| Enzymology | Illicium verum L. (Star Anise) Essential Oil: GC/MS Profile, Molecular Docking Study, In Silico ADME Profiling, Quorum Sensing, and Biofilm-Inhibiting Effect on Foodborne Bacteria. | Noumi E, Ahmad I, Adnan M, Patel H, Merghni A, Haddaji N, Bouali N, Alabbosh KF, Kadri A, Caputo L, Polito F, Snoussi M, Feo V. | Molecules | 10.3390/molecules28237691 | 2023 | |
| Phytochemical composition and antimicrobial, and anti-quorum sensing activities of Punica granatum L. methanolic extract. | Hamrita B, Noumi E, Hafi F, Nazzaro F, Snoussi M. | Iran J Microbiol | 10.18502/ijm.v14i3.9778 | 2022 | ||
| Chemical Composition, Antibacterial and Anti-Quorum Sensing Activities of Pimenta dioica L. Essential Oil and Its Major Compound (Eugenol) against Foodborne Pathogenic Bacteria. | ALrashidi AA, Noumi E, Snoussi M, Feo V. | Plants (Basel) | 10.3390/plants11040540 | 2022 | ||
| Comparative Study of Antibacterial, Antibiofilm, Antiswarming and Antiquorum Sensing Activities of Origanum vulgare Essential Oil and Terpinene-4-ol against Pathogenic Bacteria. | Merghni A, Haddaji N, Bouali N, Alabbosh KF, Adnan M, Snoussi M, Noumi E, Noumi E. | Life (Basel) | 10.3390/life12101616 | 2022 | ||
| Enzymology | GC/MS Profiling, Antibacterial, Anti-Quorum Sensing, and Antibiofilm Properties of Anethum graveolens L. Essential Oil: Molecular Docking Study and In-Silico ADME Profiling. | Noumi E, Noumi E, Ahmad I, Adnan M, Merghni A, Patel H, Haddaji N, Bouali N, Alabbosh KF, Ghannay S, Aouadi K, Kadri A, Polito F, Snoussi M, De Feo V. | Plants (Basel) | 10.3390/plants12101997 | 2023 | |
| Spices as Sustainable Food Preservatives: A Comprehensive Review of Their Antimicrobial Potential. | Sulieman AME, Abdallah EM, Alanazi NA, Ed-Dra A, Jamal A, Idriss H, Alshammari AS, Shommo SAM. | Pharmaceuticals (Basel) | 10.3390/ph16101451 | 2023 | ||
| Behavior of Vibrio spp. in Table Olives. | Posada-Izquierdo GD, Valero A, Arroyo-Lopez FN, Gonzalez-Serrano M, Ramos-Benitez AM, Benitez-Cabello A, Rodriguez-Gomez F, Jimenez-Diaz R, Garcia-Gimeno RM. | Front Microbiol | 10.3389/fmicb.2021.650754 | 2021 | ||
| Antimicrobial potential of pyroligneous extracts - a systematic review and technological prospecting. | Souza JLS, Guimaraes VBDS, Campos AD, Lund RG. | Braz J Microbiol | 10.1016/j.bjm.2018.07.001 | 2018 | ||
| Enzymology | Development of a PCR assay for detection of Yersinia ruckeri in tissues of inoculated and naturally infected trout. | Gibello A, Blanco MM, Moreno MA, Cutuli MT, Domenech A, Dominguez L, Fernandez-Garayzabal JF. | Appl Environ Microbiol | 10.1128/aem.65.1.346-350.1999 | 1999 | |
| Enzymology | Specific PCR identification and differentiation of the thermophilic campylobacters, Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. | Fermer C, Engvall EO. | J Clin Microbiol | 10.1128/jcm.37.10.3370-3373.1999 | 1999 | |
| Synergy between Winter Flounder antimicrobial peptides. | Clarke M, Hind CK, Ferguson PM, Manzo G, Mistry B, Yue B, Romanopulos J, Clifford M, Bui TT, Drake AF, Lorenz CD, Sutton JM, Mason AJ. | NPJ Antimicrob Resist | 10.1038/s44259-023-00010-7 | 2023 | ||
| Metabolism | Evidence for the horizontal transfer of an unusual capsular polysaccharide biosynthesis locus in marine bacteria. | Nakhamchik A, Wilde C, Chong H, Rowe-Magnus DA | Infect Immun | 10.1128/IAI.00653-10 | 2010 | |
| Biotechnology | Immunomagnetic separation of Vibrio vulnificus with antiflagellar monoclonal antibody. | Jadeja R, Janes ME, Simonson JG | J Food Prot | 10.4315/0362-028x-73.7.1288 | 2010 | |
| Pathogenicity | Comparison of the effects of deferasirox, deferiprone, and deferoxamine on the growth and virulence of Vibrio vulnificus. | Neupane GP, Kim DM | Transfusion | 10.1111/j.1537-2995.2009.02186.x | 2009 | |
| Antibacterial Effect of Oregano Essential Oil against Vibrio vulnificus and Its Mechanism. | Luo K, Zhao P, He Y, Kang S, Shen C, Wang S, Guo M, Wang L, Shi C | Foods | 10.3390/foods11030403 | 2022 | ||
| Transcriptomic Analysis Reveals That Municipal Wastewater Effluent Enhances Vibrio vulnificus Growth and Virulence Potential. | Correa Velez KE, Norman RS | Front Microbiol | 10.3389/fmicb.2021.754683 | 2021 | ||
| Genetics | Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562. | Rusch DB, Rowe-Magnus DA | Genome Announc | 10.1128/genomeA.00907-17 | 2017 | |
| Phylogeny | Prevalence, characteristics and ecology of Vibrio vulnificus found in New Zealand shellfish. | Cruz CD, Chycka M, Hedderley D, Fletcher GC | J Appl Microbiol | 10.1111/jam.13064 | 2016 | |
| Metabolism | TLR2 and TLR4 mediate the TNFalpha response to Vibrio vulnificus biotype 1. | Stamm LV, Drapp RL | Pathog Dis | 10.1111/2049-632X.12154 | 2014 | |
| Genetics | Genome sequence of the human-pathogenic bacterium Vibrio vulnificus type strain ATCC 27562. | Li Z, Chen H, Chen X, Zhou T, Zhao L, Zhang C, Jin W | J Bacteriol | 10.1128/JB.01890-12 | 2012 | |
| Enzymology | [Development of an immunochromatographic strip test for rapid detection of Vibrio vulnificus]. | Yan ZM, Zheng J, Chen Q, Shen H | Nan Fang Yi Ke Da Xue Xue Bao | 2011 | ||
| Genetics | High intragenomic heterogeneity of 16S rRNA genes in a subset of Vibrio vulnificus strains from the western Mediterranean coast. | Arias CR, Olivares-Fuster O, Goris J | Int Microbiol | 10.2436/20.1501.01.124 | 2010 | |
| Pathogenicity | Role of TLR4 in the host response to Vibrio vulnificus, an emerging pathogen. | Stamm LV | FEMS Immunol Med Microbiol | 10.1111/j.1574-695X.2009.00643.x | 2009 | |
| Genetics | Integrase-directed recovery of functional genes from genomic libraries. | Rowe-Magnus DA | Nucleic Acids Res | 10.1093/nar/gkp561 | 2009 | |
| Metabolism | Validation of a green fluorescent protein-labeled strain of Vibrio vulnificus for use in the evaluation of postharvest strategies for handling of raw oysters. | Drake SL, Elhanafi D, Bang W, Drake MA, Green DP, Jaykus LA | Appl Environ Microbiol | 10.1128/AEM.01091-06 | 2006 | |
| Phylogeny | Cloning, sequencing and analysis of the 16S-23S rDNA intergenic spacers (IGSs) of two strains of Vibrio vulnificus. | Deng XY, Chen XY, Wang ZX, Ou P, He JG | Yi Chuan Xue Bao | 10.1016/S0379-4172(06)60062-0 | 2006 | |
| Pathogenicity | Immunization with major outer membrane protein of Vibrio vulnificus elicits protective antibodies in a murine model. | Jung CR, Park MJ, Heo MS | J Microbiol | 2278 | 2005 | |
| Pathogenicity | In vitro efficacy of the combination of ciprofloxacin and cefotaxime against Vibrio vulnificus. | Kim DM, Lym Y, Jang SJ, Han H, Kim YG, Chung CH, Hong SP | Antimicrob Agents Chemother | 10.1128/AAC.49.8.3489-3491.2005 | 2005 | |
| Pathogenicity | Response of pathogenic Vibrio species to high hydrostatic pressure. | Berlin DL, Herson DS, Hicks DT, Hoover DG | Appl Environ Microbiol | 10.1128/AEM.65.6.2776-2780.1999 | 1999 | |
| Enzymology | Structure of a muramic acid containing capsular polysaccharide from the pathogenic strain of Vibrio vulnificus ATCC 27562. | Gunawardena S, Reddy GP, Wang Y, Kolli VS, Orlando R, Morris JG, Bush CA | Carbohydr Res | 10.1016/s0008-6215(98)00115-3 | 1998 | |
| Phylogeny | Molecular typing of Vibrio vulnificus isolates by random amplified polymorphic DNA (RAPD) analysis. | Ryang DW, Cho SW, Shin MG, Shin JH, Suh SP | Jpn J Med Sci Biol | 10.7883/yoken1952.50.113 | 1997 | |
| Pathogenicity | Evidence for the presence of a capsule in Vibrio vulnificus. | Amako K, Okada K, Miake S | J Gen Microbiol | 10.1099/00221287-130-10-2741 | 1984 | |
| Phylogeny | Vibrio vulnificus biogroup 2: new biogroup pathogenic for eels. | Tison DL, Nishibuchi M, Greenwood JD, Seidler RJ | Appl Environ Microbiol | 10.1128/aem.44.3.640-646.1982 | 1982 |
| #3820 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10143 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #41867 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #123896 | Collection of Institut Pasteur ; Curators of the CIP; CIP 75.4 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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