Vibrio proteolyticus (DSM 30189, ATCC 15338, CIP 73.06)

Name: Vibrio proteolyticus (DSM 30189, ATCC 15338, CIP 73.06)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17275

Type strain

Culture col. no. DSM 30189 ATCC 15338 CIP 73.06 IFO 13287 NBRC 13287 10 more

NCBI tax ID(s) 1219065 671

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- ATCC (Aeromonas hydrophila ssp. proteolytica) <- J.R. Merkel (Aeromonas proteolytica) JCM <-- IAM 14410 <-- NCIMB 1326 <-- J. R. Merkel strain Popoff262. CIP <- 1987, NCIB <- 1966, J.R. Merkel, Aeromonas proteolytica

Links

Vibrio proteolyticus DSM 30189 is an aerobe, Gram-negative, motile bacterium that was isolated from intestine of Limnoria tripunctata.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10469

LMG 3772,ATCC 15338,DSM 30189,IFO 13287,NCMB 1326,CAIM:511,CCUG 20302,CIP 710,CIP 102892,NCIMB 1326,KCTC 2730,CIP 73.06,CECT630,CCRC 12919,CCRC 14919,CIP 73.6,NBRC 13287,BCRC 12919,BCRC 14919,IAM 14410,JCM 21193

@ref 20215

Last LPSN update 2026-05-29 08:28:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio proteolyticus

Full scientific name Vibrio proteolyticus (Merkel et al. 1964) Baumann et al. 1982

Synonyms (2)

"Aeromonas proteolytica"
Aeromonas hydrophila subsp. proteolytica

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438	negative			99.5
121972	negative	rod-shaped

Colony morphology

47122

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9192	NUTRIENT AGAR WITH NaCl (DSMZ Medium 101)	Medium recipe at MediaDive	Name: NUTRIENT AGAR or BROTH WITH NaCl (DSMZ Medium 101) Composition: NaCl 30.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40393	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121972	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
9192	positive	growth	30
40393	positive	growth	25
47122	positive	growth	30
67770	positive	growth	25
121972	positive	growth	15-37
121972	negative	growth	5
121972	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
47122	aerobe
121972	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.386
125438		90.08

Compound production

@ref	Compound
9192	aminopeptidase
9192	ß lactamase
9192	neutral protease
9192	proteolytic enzymes
9192	protease

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121972	NaCl	positive	growth	2-10 %
121972	NaCl		growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
121972	16947 ChEBI	citrate	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
121972	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
121972	17234 ChEBI	glucose	+	fermentation
121972	17234 ChEBI	glucose	+	degradation
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
121972	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
121972	17632 ChEBI	nitrate	+	reduction
121972	17632 ChEBI	nitrate	+	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
121972	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
121972	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121972	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
121972	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test	Voges-proskauer-test	Methylred-test
121972	15688 ChEBI	acetoin		+
121972	17234 ChEBI	glucose			-
68369	35581 ChEBI	indole	+			from API 20NE
68368	35581 ChEBI	indole	+			from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121972	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121972	amylase	+
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
121972	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121972	caseinase	+	3.4.21.50
121972	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
121972	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121972	gamma-glutamyltransferase	+	2.3.2.2
121972	gelatinase	+
68369	gelatinase	+		from API 20NE
68368	gelatinase	+		from API 20E
121972	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
121972	lipase	+
68382	lipase (C 14)	-		from API zym
121972	lysine decarboxylase	+	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121972	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
121972	oxidase	+
121972	phenylalanine ammonia-lyase	-	4.3.1.24
121972	protease	+
68382	trypsin	-	3.4.21.4	from API zym
121972	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
121972	tween esterase	+
121972	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
9192	-	+	+	-	+	-	-	-	+	-	+	+	+	-	+	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
9192	-	+	+	-	+/-	-	-	-	+	+	+	+	+	-	+	-	-	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121972	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
9192	+	+	+	+	-	-	+	-	+	-	+	+	+	+	+	+	-	+	+	-	+

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
121972	not determinedn.d.	+/-	-	-	-	+	+/-	-	-	-	-	+	+	+	-	-	-	-	+	+	-	-	+	-	-	-	-	-	+	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121972	not determinedn.d.	+	+	-	+	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	+	+	-	+	-	-	-	+	-	-	+	+	+	+	+	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Crustacea
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Host species
9192	intestine of Limnoria tripunctata	Limnoria tripunctata
47122	Intestine,wood boring isopod:Limnoria tripunctata
67770	Intestine of a wood-boring isopod (Limnoria tripunctata)	Limnoria tripunctata
121972	Animal, Intestine, wood-boring isopod

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9192	1	Risk group (German classification) According to TRBA 466
121972	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3954477v1 assembly for Vibrio proteolyticus NBRC 13287	contig	GCA_039544775			671	70.8
67770	ASM46712v1 assembly for Vibrio proteolyticus NBRC 13287	contig	GCA_000467125	1219065.4	2600255074	1219065	69.39

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio proteolyticus strain ATCC 15338 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu and tRNA-Val genes, complete sequence	AF413016	730	671
20218	Vibrio proteolyticus strain ATCC 15338 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile, tRNA-Ala, and tRNA-Val genes, complete sequence	AF413017	658	671
20218	Vibrio proteolyticus strain ATCC 15338 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence	AF413018	563	671
20218	V.proteolyticus 16S ribosomal RNA	X56579	1483	671
20218	V.proteolyticus (ATCC 15338T) gene for 16S ribosomal RNA	X74723	1465	671
20218	Vibrio proteolyticus 16S ribosomal RNA gene, partial sequence	U37800	168	671
20218	Vibrio proteolyticus strain LMG 3772 16S ribosomal RNA gene, partial sequence	HQ890466	1471	671
20218	Vibrio proteolyticus gene for 16S rRNA, partial sequence, strain: NBRC 13287	AB680395	1478	671
20218	Vibrio proteolyticus 16S rRNA	D11217	217	671
20218	Vibrio proteolyticus 16S rRNA	D11266	214	671
20218	Vibrio proteolyticus 16S rRNA	D11315	191	671

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954477v1 assembly for Vibrio proteolyticus NBRC 13287
NCBI: GCA_039544775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.32	no
125439	gram_stain	BacteriaNetⓘ	negative	89.70	no
125439	motility	BacteriaNetⓘ	yes	73.62	no
125439	spore_formation	BacteriaNetⓘ	no	99.39	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio proteolyticus NBRC 13287
PATRIC: 1219065.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	95.83	yes
125438	spore-forming	spore-formingⓘ	no	90.08	no
125438	aerobic	aerobicⓘ	no	56.68	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	88.95	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	A Vibrio T6SS-Mediated Lethality in an Aquatic Animal Model.	Cohen H, Fridman CM, Gerlic M, Salomon D.	Microbiol Spectr	10.1128/spectrum.01093-23	2023
Genetics	Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates.	Vogel FA, Schlundt C, Stote RE, Ratto JA, Amaral-Zettler LA.	Microorganisms	10.3390/microorganisms9010186	2021
Metabolism	Vibrio pore-forming leukocidin activates pyroptotic cell death via the NLRP3 inflammasome.	Cohen H, Baram N, Edry-Botzer L, Munitz A, Salomon D, Gerlic M.	Emerg Microbes Infect	10.1080/22221751.2020.1720526	2020
	Proteomics Analysis Reveals Previously Uncharacterized Virulence Factors in Vibrio proteolyticus.	Ray A, Kinch LN, de Souza Santos M, Grishin NV, Orth K, Salomon D.	mBio	10.1128/mbio.01077-16	2016
	New Antimalarial and Antimicrobial Tryptamine Derivatives from the Marine Sponge Fascaplysinopsis reticulata.	Campos PE, Pichon E, Moriou C, Clerc P, Trepos R, Frederich M, De Voogd N, Hellio C, Gauvin-Bialecki A, Al-Mourabit A.	Mar Drugs	10.3390/md17030167	2019
Enzymology	Vitroprocines, new antibiotics against Acinetobacter baumannii, discovered from marine Vibrio sp. QWI-06 using mass-spectrometry-based metabolomics approach.	Liaw CC, Chen PC, Shih CJ, Tseng SP, Lai YM, Hsu CH, Dorrestein PC, Yang YL.	Sci Rep	10.1038/srep12856	2015
	Type VI secretion system MIX-effectors carry both antibacterial and anti-eukaryotic activities.	Ray A, Schwartz N, de Souza Santos M, Zhang J, Orth K, Salomon D.	EMBO Rep	10.15252/embr.201744226	2017
Pathogenicity	Quorum Sensing Inhibitory and Antifouling Activities of New Bromotyrosine Metabolites from the Polynesian Sponge Pseudoceratina n. sp.	Tintillier F, Moriou C, Petek S, Fauchon M, Hellio C, Saulnier D, Ekins M, Hooper JNA, Al-Mourabit A, Debitus C.	Mar Drugs	10.3390/md18050272	2020
Genetics	Complete genome sequence of Photobacterium ganghwense C2.2: A new polyhydroxyalkanoate production candidate.	Lascu I, Mereuta I, Chiciudean I, Hansen H, Avramescu SM, Tanase AM, Stoica I.	Microbiologyopen	10.1002/mbo3.1182	2021
Metabolism	The Antibacterial and Anti-Eukaryotic Type VI Secretion System MIX-Effector Repertoire in Vibrionaceae.	Dar Y, Salomon D, Bosis E.	Mar Drugs	10.3390/md16110433	2018
	An improved detection and quantification method for the coral pathogen Vibrio coralliilyticus.	Wilson B, Muirhead A, Bazanella M, Huete-Stauffer C, Vezzulli L, Bourne DG.	PLoS One	10.1371/journal.pone.0081800	2013
Enzymology	Simultaneous detection of marine fish pathogens by using multiplex PCR and a DNA microarray.	Gonzalez SF, Krug MJ, Nielsen ME, Santos Y, Call DR.	J Clin Microbiol	10.1128/jcm.42.4.1414-1419.2004	2004
Enzymology	The unique stability of Vibrio proteolyticus neutral protease under alkaline conditions affords a selective step for purification and use in amino acid-coupling reactions.	Durham DR.	Appl Environ Microbiol	10.1128/aem.56.8.2277-2281.1990	1990
Metabolism	Spatial and temporal variation of phenanthrene-degrading bacteria in intertidal sediments.	Berardesco G, Dyhrman S, Gallagher E, Shiaris MP.	Appl Environ Microbiol	10.1128/aem.64.7.2560-2565.1998	1998
Enzymology	Detection and quantification of the coral pathogen Vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes.	Pollock FJ, Morris PJ, Willis BL, Bourne DG.	Appl Environ Microbiol	10.1128/aem.00330-10	2010
Enzymology	Comparison of conventional, nested, and real-time quantitative PCR for diagnosis of scrub typhus.	Kim DM, Park G, Kim HS, Lee JY, Neupane GP, Graves S, Stenos J.	J Clin Microbiol	10.1128/jcm.01216-09	2011
Enzymology	Rapid detection and identification of Vibrio anguillarum by using a specific oligonucleotide probe complementary to 16S rRNA.	Martinez-Picado J, Blanch AR, Jofre J.	Appl Environ Microbiol	10.1128/aem.60.2.732-737.1994	1994
Cultivation	A medium for presumptive identification of Vibrio anguillarum.	Alsina M, Martinez-Picado J, Jofre J, Blanch AR.	Appl Environ Microbiol	10.1128/aem.60.5.1681-1683.1994	1994
Biotechnology	Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafoods.	Venkateswaran K, Kurusu T, Satake M, Shinoda S.	Appl Environ Microbiol	10.1128/aem.62.9.3516-3520.1996	1996
Enzymology	Use of the polymerase chain reaction in detection of culturable and nonculturable Vibrio vulnificus cells.	Brauns LA, Hudson MC, Oliver JD.	Appl Environ Microbiol	10.1128/aem.57.9.2651-2655.1991	1991
	Exoprotease Activity of Two Marine Bacteria during Starvation.	Albertson NH, Nystrom T, Kjelleberg S.	Appl Environ Microbiol	10.1128/aem.56.1.218-223.1990	1990
Enzymology	Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis), a new species isolated from human feces and the environment.	Brenner DJ, Hickman-Brenner FW, Lee JV, Steigerwalt AG, Fanning GR, Hollis DG, Farmer JJ, Weaver RE, Joseph SW, Seidler RJ.	J Clin Microbiol	10.1128/jcm.18.4.816-824.1983	1983
	Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
Pathogenicity	Physiological responses of bacteria to cytochalasin A: effects on growth, transport, and enzyme induction.	Cunningham D, Schafer D, Tanenbaum SW, Flashner M.	J Bacteriol	10.1128/jb.137.2.925-932.1979	1979
Metabolism	Responses to multiple-nutrient starvation in marine Vibrio sp. strain CCUG 15956.	Nystrom T, Flardh K, Kjelleberg S.	J Bacteriol	10.1128/jb.172.12.7085-7097.1990	1990
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
	Biochemical characterization of l-asparagine synthetase from Streptococcus thermophilus and its application in the enzymatic synthesis of beta-aspartyl compounds.	Matsui D, Yamada T, Hayashi J, Toyotake Y, Takeda Y, Wakayama M.	J Biosci Bioeng	10.1016/j.jbiosc.2024.06.001	2024
Biotechnology	Prevalence of Bacterial Coinfections with Vibrio harveyi in the Industrialized Flow-through Aquaculture Systems in Hainan Province: A Neglected High-Risk Lethal Causative Agent to Hybrid Grouper.	Xu H, Zeng YH, Yin WL, Lu HB, Gong XX, Zhang N, Zhang X, Long H, Ren W, Cai XN, Huang AY, Xie ZY.	Int J Mol Sci	10.3390/ijms231911628	2022
Genetics	Identification and specificity validation of unique and antimicrobial resistance genes to trace suspected pathogenic AMR bacteria and to monitor the development of AMR in non-AMR strains in the environment and clinical settings.	Rekadwad BN, Pramod N, Rao MPN, Hashem A, Avila-Quezada GD, Abd Allah EF.	Saudi J Biol Sci	10.1016/j.sjbs.2023.103869	2023
Metabolism	Production of aminoacyl prolines using the adenylation domain of nonribosomal peptide synthetase with class III polyphosphate kinase 2-mediated ATP regeneration.	Suzuki S, Hara R, Kino K.	J Biosci Bioeng	10.1016/j.jbiosc.2017.12.023	2018
Metabolism	Environmental biodegradability of recombinant structural protein.	Tachibana Y, Darbe S, Hayashi S, Kudasheva A, Misawa H, Shibata Y, Kasuya KI.	Sci Rep	10.1038/s41598-020-80114-6	2021
	Plesiomonas shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome.	Adam Y, Brezellec P, Espinosa E, Besombes A, Naquin D, Paly E, Possoz C, van Dijk E, Barre FX, Ferat JL.	Genome Biol Evol	10.1093/gbe/evac011	2022
Phylogeny	Analysis of gyrB and toxR gene sequences of Vibrio hollisae and development of gyrB- and toxR-targeted PCR methods for isolation of V. hollisae from the environment and its identification.	Vuddhakul V, Nakai T, Matsumoto C, Oh T, Nishino T, Chen CH, Nishibuchi M, Okuda J.	Appl Environ Microbiol	10.1128/aem.66.8.3506-3514.2000	2000
Phylogeny	Photobacterium halotolerans sp. nov., isolated from Lake Martel in Spain.	Rivas R, Garcia-Fraile P, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64099-0	2006

References

#9192	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30189
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40393	; Curators of the CIP;
#47122	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20302
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#121972	Collection of Institut Pasteur ; Curators of the CIP; CIP 102892
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio proteolyticus (DSM 30189, ATCC 15338, CIP 73.06)

Name and taxonomic classification

Morphology

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Physiology and metabolism

Oxygen tolerance

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API 20E

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