Vibrio sinaloensis (DSM 21333, CAIM 797, CECT 7298)

Name: Vibrio sinaloensis (DSM 21333, CAIM 797, CECT 7298)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17274

Type strain

Culture col. no. DSM 21333 CAIM 797 CECT 7298

NCBI tax ID(s) 379097

Special Collections DSMZ Literature strains

History DSMZ <- B. Gomez-Gil, Collection of Aquatic Important Microorgansms, Sinaloa

Links

Vibrio sinaloensis DSM 21333 is a Gram-negative, rod-shaped bacterium that was isolated from spleen of spotted nose snapper .

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 293725

CAIM 797,CECT 7298,LMG 25238,DSM 21333

@ref 20215

Last LPSN update 2026-05-29 08:28:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio sinaloensis

Full scientific name Vibrio sinaloensis Gomez-Gil et al. 2008

BacDive ID	Other strains from **Vibrio sinaloensis** (3)	Type strain
17273	V. sinaloensis DSM 21327, CAIM 695
17345	V. sinaloensis DSM 21326, CAIM 648
132092	V. sinaloensis T47, DSM 101073

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
32576	negative	rod-shaped
125439	negative		98.028

Pigmentation

32576

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15620	REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15620	positive	growth	30
32576	positive	growth	15-40
32576	positive	optimum	37

Culture pH

@ref	Ability	Type	PH
32576	positive	optimum	7
32576	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.122

Spore formation

@ref	Spore formation	Confidence
32576
125439		99.891

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32576	NaCl	positive	growth	0.35-9 %
32576	NaCl	positive	optimum	0.35-9 %

Observation

32576

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32576	37054 ChEBI	3-hydroxybutyrate	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
32576	16449 ChEBI	alanine	+	carbon source
32576	29016 ChEBI	arginine	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
32576	17057 ChEBI	cellobiose	+	carbon source
32576	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
32576	28757 ChEBI	fructose	+	carbon source
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
32576	24265 ChEBI	gluconate	+	carbon source
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
32576	17234 ChEBI	glucose	+	carbon source
32576	29987 ChEBI	glutamate	+	carbon source
32576	15428 ChEBI	glycine	+	carbon source
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
32576	24996 ChEBI	lactate	+	carbon source
32576	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
32576	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
32576	37684 ChEBI	mannose	+	carbon source
32576	506227 ChEBI	N-acetylglucosamine	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
32576	17272 ChEBI	propionate	+	carbon source
32576	15361 ChEBI	pyruvate	+	carbon source
32576	33942 ChEBI	ribose	+	carbon source
32576	17822 ChEBI	serine	+	carbon source
32576	30031 ChEBI	succinate	+	carbon source
32576	17992 ChEBI	sucrose	+	carbon source
32576	26986 ChEBI	threonine	+	carbon source
32576	27082 ChEBI	trehalose	+	carbon source
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	+	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
15620	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes	-
#Host Body-Site	#Organ	#Spleen

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
15620	spleen of spotted nose snapper (Lutjanus guttatus)	Lutjanus guttatus	Sinaloa	Mexico	MEX	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
15620	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM4243046v1 assembly for Vibrio sinaloensis CECT 7298	scaffold	GCA_042430465		379097	63.25
124043	ASM3040997v1 assembly for Vibrio sinaloensis CECT 7298	contig	GCA_030409975	379097.25	379097	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
15620	Vibrio sinaloensis strain CAIM 797 16S ribosomal RNA gene, partial sequence	DQ451211	1488	379097
124043	Vibrio sinaloensis strain CAIM 797(T) 16S ribosomal RNA gene, partial sequence.	OQ147520	499	379097
124043	Vibrio sinaloensis strain CECT 7298 16S ribosomal RNA gene, partial sequence.	MT760270	1371	379097

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4243046v1 assembly for Vibrio sinaloensis CECT 7298
NCBI: GCA_042430465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.12	no
125439	motility	BacteriaNetⓘ	yes	76.58	no
125439	gram_stain	BacteriaNetⓘ	negative	98.03	no
125439	spore_formation	BacteriaNetⓘ	no	99.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic and Functional Characterization of Bacillus siamensis B01 with Antimicrobial Activity Against Vibrio spp.	Nguyen CTK, Nguyen HD.	Curr Microbiol	10.1007/s00284-025-04483-9	2025
	First record of isolation and characterization of Vibrio sinaloensis from diseased orange-spotted grouper Epinephelus coioides.	Zhang X, Sun J, Zhu Y, Han Z, Hu X, Lv A, Guo Y.	Dis Aquat Organ	10.3354/dao03665	2022
Phylogeny	Bacterial communities and signatures in the stomach and intestine of juvenile P enaeus (litopenaeus) vannamei shrimp affected by acute hepatopancreatic necrosis disease.	Reyes G, Andrade B, Betancourt I, Panchana F, Preciado C, Bayot B.	Heliyon	10.1016/j.heliyon.2024.e33034	2024
Genetics	Whole-genome Sequencing of Vibrio sinaloensis T47, a Tropical Marine Isolate with Quorum Sensing Properties.	Mohamad NI, How KY, Yin WF, Chan KG.	J Genomics	10.7150/jgen.16163	2017
	Comparison of cultivable bacterial communities associated with Pacific white shrimp (Litopenaeus vannamei) larvae at different health statuses and growth stages	Zheng Y, Yu M, Liu Y, Su Y, Xu T, Yu M, Zhang XH.	Aquaculture	10.1016/j.aquaculture.2015.09.020	2016
Phylogeny	Isolation and characterization of infectious Vibrio sinaloensis strains from the Pacific shrimp Litopenaeus vannamei (Decapoda: Penaeidae).	del Carmen Flores-Miranda M, Luna-Gonzalez A, Cordova AI, Fierro-Coronado JA, Partida-Arangure BO, Pintado J, Gonzalez-Ocampo HA.	Rev Biol Trop	10.15517/rbt.v60i2.3914	2012
	Microbial immunostimulants reduce mortality in whiteleg shrimp (Litopenaeus vannamei) challenged with Vibrio sinaloensis strains	Flores-Miranda MdC, Luna-Gonzalez A, Campa-Cordova AI, Gonzalez-Ocampo HA, Fierro-Coronado JA, Partida-Arangure BO.	Aquaculture	10.1016/j.aquaculture.2011.08.005	2011
Genetics	De novo transcriptome assembly and identification of G-Protein-Coupled-Receptors (GPCRs) in two species of monogenean parasites of fish.	Cana-Bozada V, Morales-Serna FN, Fajer-Avila EJ, Llera-Herrera R.	Parasite	10.1051/parasite/2022052	2022
Metabolism	Short chain N-acyl homoserine lactone production in tropical marine Vibrio sinaloensis strain T47.	Tan PW, Tan WS, Yunos NY, Mohamad NI, Adrian TG, Yin WF, Chan KG.	Sensors (Basel)	10.3390/s140712958	2014
	Rapid Identification of Vibrio Species of the Harveyi Clade Using MALDI-TOF MS Profiling With Main Spectral Profile Database Implemented With an In-House Database: Luvibase.	Mougin J, Flahaut C, Roquigny R, Bonnin-Jusserand M, Grard T, Le Bris C.	Front Microbiol	10.3389/fmicb.2020.586536	2020
	Diversity and antimicrobial potential of culturable heterotrophic bacteria associated with the endemic marine sponge Arenosclera brasiliensis.	Rua CP, Trindade-Silva AE, Appolinario LR, Venas TM, Garcia GD, Carvalho LS, Lima A, Kruger R, Pereira RC, Berlinck RG, Valle RA, Thompson CC, Thompson F.	PeerJ	10.7717/peerj.419	2014
Enzymology	Sediment and vegetation as reservoirs of Vibrio vulnificus in the Tampa Bay Estuary and Gulf of Mexico.	Chase E, Young S, Harwood VJ.	Appl Environ Microbiol	10.1128/aem.03243-14	2015
	A New High Throughput Sequencing Assay for Characterizing the Diversity of Natural Vibrio Communities and Its Application to a Pacific Oyster Mortality Event.	King WL, Siboni N, Kahlke T, Green TJ, Labbate M, Seymour JR.	Front Microbiol	10.3389/fmicb.2019.02907	2019
Enzymology	Quantitative PCR Analysis of Gut Disease-Discriminatory Phyla for Determining Shrimp Disease Incidence.	Yu W, Cao J, Dai W, Qiu Q, Xiong J.	Appl Environ Microbiol	10.1128/aem.01387-18	2018
Genetics	Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus).	Restrepo L, Dominguez-Borbor C, Bajana L, Betancourt I, Rodriguez J, Bayot B, Reyes A.	Microbiome	10.1186/s40168-021-01043-8	2021
Metabolism	Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades.	Green RT, Todd JD, Johnston AW.	ISME J	10.1038/ismej.2012.140	2013
Metabolism	Prolyl Oligopeptidase from the Blood Fluke Schistosoma mansoni: From Functional Analysis to Anti-schistosomal Inhibitors.	Fajtova P, Stefanic S, Hradilek M, Dvorak J, Vondrasek J, Jilkova A, Ulrychova L, McKerrow JH, Caffrey CR, Mares M, Horn M.	PLoS Negl Trop Dis	10.1371/journal.pntd.0003827	2015
Phylogeny	Vibrio hippocampi sp. nov., a new species isolated from wild seahorses (Hippocampus guttulatus).	Balcazar JL, Pintado J, Planas M.	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.01955.x	2010
Phylogeny	Vibrio sinaloensis sp. nov., isolated from the spotted rose snapper, Lutjanus guttatus Steindachner, 1869.	Gomez-Gil B, Fajer-Avila E, Pascual J, Macian MC, Pujalte MJ, Garay E, Roque A	Int J Syst Evol Microbiol	10.1099/ijs.0.65719-0	2008

References

#15620	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21333
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28791	IJSEM 1621 2008 ( DOI 10.1099/ijs.0.65719-0 , PubMed 18599705 )
#32576	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28791
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio sinaloensis (DSM 21333, CAIM 797, CECT 7298)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042430465

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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