Vibrio natriegens (DSM 759, ATCC 14048, NCMB 857)

Name: Vibrio natriegens (DSM 759, ATCC 14048, NCMB 857)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17265

Type strain

Strain Designation 111

Culture col. no. DSM 759 ATCC 14048 NCMB 857 111 CIP 103193 3 more

NCBI tax ID(s) 1219067 691

Special Collections DSMZ CCUG CIP

Links

Vibrio natriegens 111 is a mesophilic, Gram-negative, motile prokaryote that was isolated from salt marsh mud.

Gram-negative motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92285

LMG 10935,ATCC 14048,CCM 2575,CCRC 10805,CCUG 4980,CECT 526,CIP 103193,DSM 759,NCIMB 857,NCMB 857,CAIM:12,CCUG 4980 A,CCUG 16371,IFO 15636,CIP 75.07,LMD 73.19,CIP 75.7,IMET 11297,NCCB 73019,NBRC 15636,BCRC 10805,CCUG 70547T

@ref 20215

Last LPSN update 2025-12-16 09:51:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio natriegens

Full scientific name Vibrio natriegens (Payne et al. 1961) Baumann et al. 1981

Synonyms (2)

Beneckea natriegens
"Pseudomonas natriegens"

BacDive ID	Other strains from **Vibrio natriegens** (3)	Type strain
143022	V. natriegens CCUG 16372, ATCC 33788
143023	V. natriegens CCUG 16373, ATCC 33897
143024	V. natriegens CCUG 16374, ATCC 33898

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		93.7
125438			90.101
125438	negative		99.5
121244	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
431	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
431	VIBRIO NATRIEGENS MEDIUM (DSMZ Medium 115)	Medium recipe at MediaDive	Name: VIBRIO NATRIEGENS MEDIUM (DSMZ Medium 115) Composition: NaCl 15.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37063	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
431	SEA WATER AGAR (DSMZ Medium 246)	Medium recipe at MediaDive	Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water
121244	CIP Medium 13	Medium recipe at CIP
121244	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
431	positive	growth	30	mesophilic
431	positive	growth	28	mesophilic
37063	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96

Spore formation

@ref	Spore formation	Confidence
125439		94.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68369	35581 ChEBI	indole	from API 20NE
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68369	35581 ChEBI	indole		-	from API 20NE
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68369	gelatinase	+		from API 20NE
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68369	urease	-	3.5.1.5	from API 20NE
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
431	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	+	+	-	+	+	+	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
431	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	+	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
431	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	+	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
431	-	-	-	-	-	-	-	-	-	-	+/-	+	+	-	-	+	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
431	+	-	+	-	-	+	+	-	+	+	-	+	+	+	+	+	-	+	+	+	+
431	+	-	-	-	-	+	+	-	+	+	-	+	+	+	-	+	-	+	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Salt marsh
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
431	salt marsh mud	Georgia, Sapelo island	USA	USA	North America
121244	Environment, Salt marsh mud	Sapelo Island, Georgia	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence X74714 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	3075
Soil Samples	169
Animal Samples	1856
Plant Samples	64
Total Samples	5164

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
431	1	Risk group (German classification) According to TRBA 466
121244	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3562145v1 assembly for Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	complete	GCA_035621455	1219067.65		1219067	97.67
124043	ASM2450801v1 assembly for Vibrio natriegens 14048	complete	GCA_024508015	691.125		691	97.67
66792	ASM145625v1 assembly for Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	complete	GCA_001456255	1219067.16	2811995373	1219067	94.7
66792	ASM168002v1 assembly for Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	complete	GCA_001680025	1219067.12	2811995319	1219067	94.7
124043	ASM3384308v1 assembly for Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	contig	GCA_033843085	1219067.64		1219067	77.67
66792	ASM159108v1 assembly for Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	contig	GCA_001591085	1219067.11	2731957636	1219067	69.71
66792	ASM41790v1 assembly for Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	contig	GCA_000417905	1219067.7	2582580865	1219067	65.62
66792	ASM43878v2 assembly for Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759	scaffold	GCA_000438785	1219067.6	2554235216	1219067	39.15

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio natriegens 16S ribosomal RNA gene, partial sequence	DQ068938	1470	1219067
20218	Vibrio natriegens 16S ribosomal RNA gene, partial sequence	HM771343	1471	1219067
20218	V.natrigens 16S ribosomal RNA	X56581	1483	1219067
20218	V.natriegens (ATCC 14048T) gene for 16S ribosomal RNA	X74714	1466	1219067
20218	Vibrio natriegens 16S rRNA	D11211	214	691
20218	Vibrio natriegens 16S rRNA	D11260	214	691
20218	Vibrio natriegens 16S rRNA	D11309	192	691
20218	Vibrio natriegens gene for 16S rRNA, partial sequence, strain: NBRC 15636	AB680922	1478	1219067
124043	Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 16S ribosomal RNA gene, partial sequence.	MG722643	402	1219067

GC content

431

GC-content (mol%)46.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
NCBI: GCA_001680025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.00	no
125439	gram_stain	BacteriaNetⓘ	negative	93.70	no
125439	motility	BacteriaNetⓘ	yes	68.70	no
125439	spore_formation	BacteriaNetⓘ	no	94.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 ATCC 14048
NCBI: GCA_001456255.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	93.71	no
125438	aerobic	aerobicⓘ	no	57.81	no
125438	spore-forming	spore-formingⓘ	no	88.23	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	90.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Low-biomass pyruvate production with engineered Vibrio natriegens is accompanied by parapyruvate formation.	Hadrich M, Scheuchenegger C, Vital ST, Gunkel C, Muller S, Hoff J, Borger J, Glawischnig E, Thoma F, Blombach B.	Microb Cell Fact	10.1186/s12934-025-02693-1	2025
	Tools for classification of growing/non-growing bacterial colonies using laser speckle imaging.	Balmages I, Liepins J, Zolins S, Bliznuks D, Broks R, Lihacova I, Lihachev A.	Front Microbiol	10.3389/fmicb.2023.1279667	2023
	Investigation of exopolysaccharide formation and its impact on anaerobic succinate production with Vibrio natriegens.	Schulze C, Hadrich M, Borger J, Ruhmann B, Doring M, Sieber V, Thoma F, Blombach B.	Microb Biotechnol	10.1111/1751-7915.14277	2024
	Ploidy in Vibrio natriegens: Very Dynamic and Rapidly Changing Copy Numbers of Both Chromosomes.	Bruck P, Wasser D, Soppa J.	Genes (Basel)	10.3390/genes14071437	2023
Proteome	Producing recombinant proteins in Vibrio natriegens.	Smith M, Hernandez JS, Messing S, Ramakrishnan N, Higgins B, Mehalko J, Perkins S, Wall VE, Grose C, Frank PH, Cregger J, Le PV, Johnson A, Sherekar M, Pagonis M, Drew M, Hong M, Widmeyer SRT, Denson JP, Snead K, Poon I, Waybright T, Champagne A, Esposito D, Jones J, Taylor T, Gillette W.	Microb Cell Fact	10.1186/s12934-024-02455-5	2024
	High-cell-density cultivation of Vibrio natriegens in a low-chloride chemically defined medium.	Biener R, Horn T, Komitakis A, Schendel I, Konig L, Hauenstein A, Ludl A, Speidel A, Schmid S, Weisser J, Brossmann M, Kern S, Kronmuller M, Vierkorn S, Suckow L, Braun A.	Appl Microbiol Biotechnol	10.1007/s00253-023-12799-4	2023
	Adapted Correlation Methods for Laser Speckle Imaging of Microbial Activity: Evaluation and Rationale.	Balmages I, Smite K, Bliznuks D, Reinis A, Lihachev A, Lihacova I.	Sensors (Basel)	10.3390/s25185772	2025
	High-cell-density fed-batch cultivations of Vibrio natriegens.	Thiele I, Gutschmann B, Aulich L, Girard M, Neubauer P, Riedel SL.	Biotechnol Lett	10.1007/s10529-021-03147-5	2021
	Agarose-Degrading Characteristics of a Deep-Sea Bacterium Vibrio Natriegens WPAGA4 and Its Cold-Adapted GH50 Agarase Aga3420.	Zhang M, Wang J, Zeng R, Wang D, Wang W, Tong X, Qu W.	Mar Drugs	10.3390/md20110692	2022
	Use of the speckle imaging sub-pixel correlation analysis in revealing a mechanism of microbial colony growth.	Balmages I, Liepins J, Auzins ET, Bliznuks D, Baranovics E, Lihacova I, Lihachev A.	Sci Rep	10.1038/s41598-023-29809-0	2023
	Identification of Emerging Industrial Biotechnology Chassis Vibrio natriegens as a Novel High Salt-Tolerant and Feedstock Flexibility Electroactive Microorganism for Microbial Fuel Cell.	Gong Z, Xie R, Zhang Y, Wang M, Tan T.	Microorganisms	10.3390/microorganisms11020490	2023
	Laser speckle imaging for early detection of microbial colony forming units.	Balmages I, Liepins J, Zolins S, Bliznuks D, Lihacova I, Lihachev A.	Biomed Opt Express	10.1364/boe.416456	2021
	Metabolic engineering of Vibrio natriegens for anaerobic succinate production.	Thoma F, Schulze C, Gutierrez-Coto C, Hadrich M, Huber J, Gunkel C, Thoma R, Blombach B.	Microb Biotechnol	10.1111/1751-7915.13983	2022
Biotechnology	Metabolic engineering of Vibrio natriegens.	Thoma F, Thoma F, Blombach B.	Essays Biochem	10.1042/ebc20200135	2021
Genetics	Insights into the Vibrio Genus: A One Health Perspective from Host Adaptability and Antibiotic Resistance to In Silico Identification of Drug Targets.	Marques PH, Prado LCDS, Felice AG, Rodrigues TCV, Pereira UP, Jaiswal AK, Azevedo V, Oliveira CJF, Soares S.	Antibiotics (Basel)	10.3390/antibiotics11101399	2022
	Biosensor-based isolation of amino acid-producing Vibrio natriegens strains.	Stella RG, Baumann P, Lorke S, Munstermann F, Wirtz A, Wiechert J, Marienhagen J, Frunzke J.	Metab Eng Commun	10.1016/j.mec.2021.e00187	2021
Genetics	Characterization and Genomic Analysis of ssDNA Vibriophage vB_VpaM_PG19 within Microviridae, Representing a Novel Viral Genus.	Guo R, Zheng K, Luo L, Liu Y, Shao H, Guo C, He H, Wang H, Sung YY, Mok WJ, Wong LL, Zhang YZ, Liang Y, McMinn A, Wang M.	Microbiol Spectr	10.1128/spectrum.00585-22	2022
Genetics	Vibrionaceae core, shell and cloud genes are non-randomly distributed on Chr 1: An hypothesis that links the genomic location of genes with their intracellular placement.	Sonnenberg CB, Kahlke T, Haugen P.	BMC Genomics	10.1186/s12864-020-07117-5	2020
	Sustainable citric acid production from CO₂ in an engineered cyanobacterium.	Zhang L, Bryan SJ, Selao TT.	Front Microbiol	10.3389/fmicb.2022.973244	2022
Genetics	Phylogenomic diversity of Vibrio species and other Gammaproteobacteria isolated from Pacific oysters (Crassostrea gigas) during a summer mortality outbreak.	Worden PJ, Bogema DR, Micallef ML, Go J, Deutscher AT, Labbate M, Green TJ, King WL, Liu M, Seymour JR, Jenkins C.	Microb Genom	10.1099/mgen.0.000883	2022
Biotechnology	High Substrate Uptake Rates Empower Vibrio natriegens as Production Host for Industrial Biotechnology.	Hoffart E, Grenz S, Lange J, Nitschel R, Muller F, Schwentner A, Feith A, Lenfers-Lucker M, Takors R, Blombach B.	Appl Environ Microbiol	10.1128/aem.01614-17	2017
	Antifouling Activity of Halogenated Compounds Derived from the Red Alga Sphaerococcus coronopifolius: Potential for the Development of Environmentally Friendly Solutions.	Quemener M, Kikionis S, Fauchon M, Toueix Y, Aulanier F, Makris AM, Roussis V, Ioannou E, Hellio C.	Mar Drugs	10.3390/md20010032	2021
	Bacterial burden in the lower airways predicts disease progression in idiopathic pulmonary fibrosis and is independent of radiological disease extent.	Invernizzi R, Barnett J, Rawal B, Nair A, Ghai P, Kingston S, Chua F, Wu Z, Wells AU, Renzoni ER, Nicholson AG, Rice A, Lloyd CM, Byrne AJ, Maher TM, Devaraj A, Molyneaux PL.	Eur Respir J	10.1183/13993003.01519-2019	2020
Phylogeny	The Respiratory Microbiome in Chronic Hypersensitivity Pneumonitis Is Distinct from That of Idiopathic Pulmonary Fibrosis.	Invernizzi R, Wu BG, Barnett J, Ghai P, Kingston S, Hewitt RJ, Feary J, Li Y, Chua F, Wu Z, Wells AU, George PM, Renzoni EA, Nicholson AG, Rice A, Devaraj A, Segal LN, Byrne AJ, Maher TM, Lloyd CM, Molyneaux PL.	Am J Respir Crit Care Med	10.1164/rccm.202002-0460oc	2021
Metabolism	Microbial Upgrading of Acetate into Value-Added Products-Examining Microbial Diversity, Bioenergetic Constraints and Metabolic Engineering Approaches.	Kutscha R, Pflugl S.	Int J Mol Sci	10.3390/ijms21228777	2020
	Production and Characterization of an Exopolysaccharide Excreted by a Deep-Sea Hydrothermal Vent Bacterium Isolated from the Polychaete Annelid Alvinella pompejana.	Vincent P, Pignet P, Talmont F, Bozzi L, Fournet B, Guezennec J, Jeanthon C, Prieur D.	Appl Environ Microbiol	10.1128/aem.60.11.4134-4141.1994	1994
	Susceptibility to Heavy Metals and Characterization of Heterotrophic Bacteria Isolated from Two Hydrothermal Vent Polychaete Annelids, Alvinella pompejana and Alvinella caudata.	Jeanthon C, Prieur D.	Appl Environ Microbiol	10.1128/aem.56.11.3308-3314.1990	1990
	Dual roles of glycine betaine, dimethylglycine, and sarcosine as osmoprotectants and nutrient sources for Vibrio natriegens.	Thomas HE, Boas Lichty KE, Richards GP, Boyd EF.	Appl Environ Microbiol	10.1128/aem.00619-25	2025
	A comprehensive screening on the effect of Bacillus cereus and Vibrio natriegens bacterial consortia in cement mortar.	B S, Nagarajan P, Sudhakumar J, Thomas BS, Sankaranarayanan P, Pitchaikani S, T V S.	Sci Rep	10.1038/s41598-025-94641-7	2025
	Isolation and characterization of chitinolytic fast-growing bacteria from marine environment in Vietnam	Tran T, Dam T, Nguyen L, Le T, Vu T, Walther T, Le H.	J Genet Eng Biotechnol		2025
	Small-scale fed-batch cultivations of Vibrio natriegens: overcoming challenges for early process development.	Luchtrath C, Forsten E, Polis R, Hoffmann M, Genis AS, Kuhn AL, Hovels M, Deppenmeier U, Magnus J, Buchs J.	Bioprocess Biosyst Eng	10.1007/s00449-025-03159-9	2025
	Expanding the capabilities of MuGENT for large-scale genetic engineering of the fastest-replicating species, Vibrio natriegens.	Glasgo LD, Lukasiak KL, Zinser ER.	Microbiol Spectr	10.1128/spectrum.03964-23	2024
	Expanding genetic engineering capabilities in Vibrio natriegens with the Vnat Collection.	Faber A, Politan RJ, Stukenberg D, Morris KM, Kim R, Jeon E, Inckemann R, Becker A, Thuronyi B, Fritz G.	Nucleic Acids Res	10.1093/nar/gkaf580	2025
Metabolism	Evidence for novel polycyclic aromatic hydrocarbon degradation pathways in culturable marine isolates.	Walton JL, Buchan A.	Microbiol Spectr	10.1128/spectrum.03409-23	2024
	Engineering of fast-growing Vibrio natriegens for biosynthesis of poly(3-hydroxybutyrate-co-lactate).	Sun X, Shang Y, Zhang B, Guo P, Luo Y, Wu H.	Bioresour Bioprocess	10.1186/s40643-024-00801-4	2024
Cultivation	Unraveling the impact of pH, sodium concentration, and medium osmolality on Vibrio natriegens in batch processes.	Forsten E, Gerdes S, Petri R, Buchs J, Magnus J.	BMC Biotechnol	10.1186/s12896-024-00897-8	2024
	BacTermFinder: a comprehensive and general bacterial terminator finder using a CNN ensemble.	Taheri Ghahfarokhi SMA, Pena-Castillo L.	NAR Genom Bioinform	10.1093/nargab/lqaf016	2025
	Non-Sterilized Fermentation of 2,3-Butanediol with Seawater by Metabolic Engineered Fast-Growing Vibrio natriegens.	Meng W, Zhang Y, Ma L, Lu C, Xu P, Ma C, Gao C.	Front Bioeng Biotechnol	10.3389/fbioe.2022.955097	2022
Genetics	Vibrio natriegens genome-scale modeling reveals insights into halophilic adaptations and resource allocation.	Coppens L, Tschirhart T, Leary DH, Colston SM, Compton JR, Hervey WJ, Dana KL, Vora GJ, Bordel S, Ledesma-Amaro R.	Mol Syst Biol	10.15252/msb.202110523	2023
	Efficient natural plasmid transformation of Vibrio natriegens enables zero-capital molecular biology.	Specht DA, Sheppard TJ, Kennedy F, Li S, Gadikota G, Barstow B.	PNAS Nexus	10.1093/pnasnexus/pgad444	2024
	Discovery and remodeling of Vibrio natriegens as a microbial platform for efficient formic acid biorefinery.	Tian J, Deng W, Zhang Z, Xu J, Yang G, Zhao G, Yang S, Jiang W, Gu Y.	Nat Commun	10.1038/s41467-023-43631-2	2023
	Complete Genome Sequences of Two Vibrio natriegens Bacteriophages.	Harris MT, Ho TC, Fruchtman H, Garin ME, Kubatin V, Lu T, Xue L, Marr MT.	Microbiol Resour Announc	10.1128/mra.01133-20	2020
	The Orthovanadate-Catalyzed Formation of a Thermally Inert and Low-Redox-Potential Melanin.	VanArsdale E, Atoyebi O, Nag O, Laskoski M, Glaser E, Oh E, Vora GJ, Wang Z.	Int J Mol Sci	10.3390/ijms26125537	2025
	Multiple Rounds of In Vivo Random Mutagenesis and Selection in Vibrio natriegens Result in Substantial Increases in REE Binding Capacity.	Medin S, Dressel A, Specht DA, Sheppard TJ, Holycross ME, Reid MC, Gazel E, Wu M, Barstow B.	ACS Synth Biol	10.1021/acssynbio.3c00484	2023
	Production of N-acetylglucosamine with Vibrio alginolyticus FA2, an emerging platform for economical unsterile open fermentation.	Peng Y, Xu P, Tao F.	Synth Syst Biotechnol	10.1016/j.synbio.2023.08.003	2023
	Complete Genome Sequence of Vibrio natriegens Phage Phriendly.	Clark J, Awah A, Moreland R, Liu M, Gill JJ, Ramsey J.	Microbiol Resour Announc	10.1128/mra.01096-19	2019
	Establishment of a salt-induced bioremediation platform from marine Vibrio natriegens.	Huang L, Ni J, Zhong C, Xu P, Dai J, Tang H.	Commun Biol	10.1038/s42003-022-04319-3	2022
Transcriptome	Changes in Vibrio natriegens Growth Under Simulated Microgravity.	Yin M, Ye B, Jin Y, Liu L, Zhang Y, Li P, Wang Y, Li Y, Han Y, Shen W, Zhao Z.	Front Microbiol	10.3389/fmicb.2020.02040	2020
	Rapid, high-titer biosynthesis of melanin using the marine bacterium Vibrio natriegens.	Smith AD, Tschirhart T, Compton J, Hennessa TM, VanArsdale E, Wang Z.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1239756	2023
Metabolism	A Hybrid Extracellular Electron Transfer Pathway Enhances the Survival of Vibrio natriegens.	Conley BE, Weinstock MT, Bond DR, Gralnick JA.	Appl Environ Microbiol	10.1128/aem.01253-20	2020
	Engineering a customizable antibacterial T6SS-based platform in Vibrio natriegens.	Jana B, Keppel K, Salomon D.	EMBO Rep	10.15252/embr.202153681	2021
	Modulating bacterial function utilizing A knowledge base of transcriptional regulatory modules.	Shin J, Zielinski DC, Palsson BO.	Nucleic Acids Res	10.1093/nar/gkae742	2024
Genetics	The role of replication-induced chromosomal copy numbers in spatio-temporal gene regulation and evolutionary chromosome plasticity.	Teufel M, Henkel W, Sobetzko P.	Front Microbiol	10.3389/fmicb.2023.1119878	2023
	Vibrio natriegens as a pET-Compatible Expression Host Complementary to Escherichia coli.	Xu J, Dong F, Wu M, Tao R, Yang J, Wu M, Jiang Y, Yang S, Yang L.	Front Microbiol	10.3389/fmicb.2021.627181	2021
Metabolism	Orthogonal CRISPR-associated transposases for parallel and multiplexed chromosomal integration.	Yang S, Zhang Y, Xu J, Zhang J, Zhang J, Yang J, Jiang Y, Yang S.	Nucleic Acids Res	10.1093/nar/gkab752	2021
	Changes in interactions over ecological time scales influence single-cell growth dynamics in a metabolically coupled marine microbial community.	Daniels M, van Vliet S, Ackermann M.	ISME J	10.1038/s41396-022-01312-w	2023
	A multifunctional system for genome editing and large-scale interspecies gene transfer.	Teufel M, Klein CA, Mager M, Sobetzko P.	Nat Commun	10.1038/s41467-022-30843-1	2022
Metabolism	Exploiting the Feedstock Flexibility of the Emergent Synthetic Biology Chassis Vibrio natriegens for Engineered Natural Product Production.	Ellis GA, Tschirhart T, Spangler J, Walper SA, Medintz IL, Vora GJ.	Mar Drugs	10.3390/md17120679	2019
Enzymology	Vibrio natriegens as Host for Expression of Multisubunit Membrane Protein Complexes.	Schleicher L, Muras V, Claussen B, Pfannstiel J, Blombach B, Dibrov P, Fritz G, Steuber J.	Front Microbiol	10.3389/fmicb.2018.02537	2018
Metabolism	Melanin Produced by the Fast-Growing Marine Bacterium Vibrio natriegens through Heterologous Biosynthesis: Characterization and Application.	Wang Z, Tschirhart T, Schultzhaus Z, Kelly EE, Chen A, Oh E, Nag O, Glaser ER, Kim E, Lloyd PF, Charles PT, Li W, Leary D, Compton J, Phillips DA, Dhinojwala A, Payne GF, Vora GJ.	Appl Environ Microbiol	10.1128/aem.02749-19	2020
	Vibrio parahaemolyticus T6SS2 effector repertoires.	Tchelet D, Keppel K, Bosis E, Salomon D.	Gut Microbes	10.1080/19490976.2023.2178795	2023
	A DNase Type VI Secretion System Effector Requires Its MIX Domain for Secretion.	Fridman CM, Jana B, Ben-Yaakov R, Bosis E, Salomon D.	Microbiol Spectr	10.1128/spectrum.02465-22	2022
	Cell-free Protein Expression Using the Rapidly Growing Bacterium Vibrio natriegens.	Wiegand DJ, Lee HH, Ostrov N, Church GM.	J Vis Exp	10.3791/59495	2019
	The RIX domain defines a class of polymorphic T6SS effectors and secreted adaptors.	Kanarek K, Fridman CM, Bosis E, Salomon D.	Nat Commun	10.1038/s41467-023-40659-2	2023
	The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence.	Mass S, Cohen H, Podicheti R, Rusch DB, Gerlic M, Ushijima B, van Kessel JC, Bosis E, Salomon D.	PLoS Biol	10.1371/journal.pbio.3002734	2024
	Metabolic engineering enables Bacillus licheniformis to grow on the marine polysaccharide ulvan.	Dutschei T, Zuhlke MK, Welsch N, Eisenack T, Hilkmann M, Krull J, Stuhle C, Brott S, Durwald A, Reisky L, Hehemann JH, Becher D, Schweder T, Bornscheuer UT.	Microb Cell Fact	10.1186/s12934-022-01931-0	2022
	Repurposing Clinically Approved Drugs for the Treatment of Bacillus cereus, a Surrogate for Bacillus anthracis.	Amakawa M, Gunawardana S, Jabbour A, Hernandez A, Pasos C, Alameh S, Martchenko Shilman M, Levitin A.	ACS Omega	10.1021/acsomega.0c03207	2020
	Exploiting rRNA operon copy number to investigate bacterial reproductive strategies.	Roller BR, Stoddard SF, Schmidt TM.	Nat Microbiol	10.1038/nmicrobiol.2016.160	2016
	Targeted and high-throughput gene knockdown in diverse bacteria using synthetic sRNAs.	Cho JS, Yang D, Prabowo CPS, Ghiffary MR, Han T, Choi KR, Moon CW, Zhou H, Ryu JY, Kim HU, Lee SY.	Nat Commun	10.1038/s41467-023-38119-y	2023
Metabolism	Direct Detection of Heterotrophic Diazotrophs Associated with Planktonic Aggregates.	Geisler E, Bogler A, Rahav E, Bar-Zeev E.	Sci Rep	10.1038/s41598-019-45505-4	2019
	In Vitro and In Silico Screening of Anti-Vibrio spp., Antibiofilm, Antioxidant and Anti-Quorum Sensing Activities of Cuminum cyminum L. Volatile Oil.	Ghannay S, Aouadi K, Kadri A, Snoussi M.	Plants (Basel)	10.3390/plants11172236	2022
	A Novel PCR-Based Approach for Accurate Identification of Vibrio parahaemolyticus.	Li R, Chiou J, Chan EW, Chen S.	Front Microbiol	10.3389/fmicb.2016.00044	2016
	Single-cell measurement of plasmid copy number and promoter activity.	Shao B, Rammohan J, Anderson DA, Alperovich N, Ross D, Voigt CA.	Nat Commun	10.1038/s41467-021-21734-y	2021
	New Antimalarial and Antimicrobial Tryptamine Derivatives from the Marine Sponge Fascaplysinopsis reticulata.	Campos PE, Pichon E, Moriou C, Clerc P, Trepos R, Frederich M, De Voogd N, Hellio C, Gauvin-Bialecki A, Al-Mourabit A.	Mar Drugs	10.3390/md17030167	2019
	Diversity in Natural Transformation Frequencies and Regulation across Vibrio Species.	Simpson CA, Podicheti R, Rusch DB, Dalia AB, van Kessel JC.	mBio	10.1128/mbio.02788-19	2019
	rRNA promoter activity in the fast-growing bacterium Vibrio natriegens.	Aiyar SE, Gaal T, Gourse RL.	J Bacteriol	10.1128/jb.184.5.1349-1358.2002	2002
Metabolism	Viscosity dictates metabolic activity of Vibrio ruber.	Boric M, Danevcic T, Stopar D.	Front Microbiol	10.3389/fmicb.2012.00255	2012
Metabolism	Antimicrobial and cytotoxic assessment of marine cyanobacteria - Synechocystis and Synechococcus.	Martins RF, Ramos MF, Herfindal L, Sousa JA, Skaerven K, Vasconcelos VM.	Mar Drugs	10.3390/md6010001	2008
	An improved detection and quantification method for the coral pathogen Vibrio coralliilyticus.	Wilson B, Muirhead A, Bazanella M, Huete-Stauffer C, Vezzulli L, Bourne DG.	PLoS One	10.1371/journal.pone.0081800	2013
Enzymology	A persistent, productive, and seasonally dynamic vibriophage population within Pacific oysters (Crassostrea gigas).	Comeau AM, Buenaventura E, Suttle CA.	Appl Environ Microbiol	10.1128/aem.71.9.5324-5331.2005	2005
Enzymology	Simultaneous detection of marine fish pathogens by using multiplex PCR and a DNA microarray.	Gonzalez SF, Krug MJ, Nielsen ME, Santos Y, Call DR.	J Clin Microbiol	10.1128/jcm.42.4.1414-1419.2004	2004
Enzymology	Infaunal burrows are enrichment zones for Vibrio parahaemolyticus.	Gamble MD, Lovell CR.	Appl Environ Microbiol	10.1128/aem.02897-10	2011
	Marine bacterial isolates display diverse responses to UV-B radiation.	Joux F, Jeffrey WH, Lebaron P, Mitchell DL.	Appl Environ Microbiol	10.1128/aem.65.9.3820-3827.1999	1999
	N2 fixation in marine heterotrophic bacteria: dynamics of environmental and molecular regulation.	Coyer JA, Cabello-Pasini A, Swift H, Alberte RS.	Proc Natl Acad Sci U S A	10.1073/pnas.93.8.3575	1996
Enzymology	Detection and quantification of the coral pathogen Vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes.	Pollock FJ, Morris PJ, Willis BL, Bourne DG.	Appl Environ Microbiol	10.1128/aem.00330-10	2010
Enzymology	Development of a toxR-based loop-mediated isothermal amplification assay for detecting Vibrio parahaemolyticus.	Chen S, Ge B.	BMC Microbiol	10.1186/1471-2180-10-41	2010
Enzymology	Cloning and nucleotide sequence of the gyrB gene of Vibrio parahaemolyticus and its application in detection of this pathogen in shrimp.	Venkateswaran K, Dohmoto N, Harayama S.	Appl Environ Microbiol	10.1128/aem.64.2.681-687.1998	1998
Enzymology	Rapid detection and identification of Vibrio anguillarum by using a specific oligonucleotide probe complementary to 16S rRNA.	Martinez-Picado J, Blanch AR, Jofre J.	Appl Environ Microbiol	10.1128/aem.60.2.732-737.1994	1994
Metabolism	Rapid detection of viable salmonellae in produce by coupling propidium monoazide with loop-mediated isothermal amplification.	Chen S, Wang F, Beaulieu JC, Stein RE, Ge B.	Appl Environ Microbiol	10.1128/aem.00354-11	2011
Biotechnology	Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafoods.	Venkateswaran K, Kurusu T, Satake M, Shinoda S.	Appl Environ Microbiol	10.1128/aem.62.9.3516-3520.1996	1996
Phylogeny	Numerical taxonomy of phenanthrene-degrading bacteria isolated from the Chesapeake Bay.	West PA, Okpokwasili GC, Brayton PR, Grimes DJ, Colwell RR.	Appl Environ Microbiol	10.1128/aem.48.5.988-993.1984	1984
Metabolism	Detection of ammonium-oxidizing bacteria of the beta-subclass of the class Proteobacteria in aquatic samples with the PCR.	Voytek MA, Ward BB.	Appl Environ Microbiol	10.1128/aem.61.4.1444-1450.1995	1995
Enzymology	Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis), a new species isolated from human feces and the environment.	Brenner DJ, Hickman-Brenner FW, Lee JV, Steigerwalt AG, Fanning GR, Hollis DG, Farmer JJ, Weaver RE, Joseph SW, Seidler RJ.	J Clin Microbiol	10.1128/jcm.18.4.816-824.1983	1983
	Application of a microcomputer-based system to control and monitor bacterial growth.	Titus JA, Luli GW, Dekleva ML, Strohl WR.	Appl Environ Microbiol	10.1128/aem.47.2.239-244.1984	1984
Enzymology	Direct detection of Salmonella spp. in estuaries by using a DNA probe.	Knight IT, Shults S, Kaspar CW, Colwell RR.	Appl Environ Microbiol	10.1128/aem.56.4.1059-1066.1990	1990
	Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Pathogenicity	Environmental Impact of Tributyltin-Resistant Marine Bacteria in the Indigenous Microbial Population of Tributyltin-Polluted Surface Sediments.	Mimura H, Yagi M, Yoshida K	Biocontrol Sci	10.4265/bio.22.89	2017
	Generation of a Prophage-Free Variant of the Fast-Growing Bacterium Vibrio natriegens.	Pfeifer E, Michniewski S, Gatgens C, Munch E, Muller F, Polen T, Millard A, Blombach B, Frunzke J	Appl Environ Microbiol	10.1128/AEM.00853-19	2019
Genetics	Draft Genome Sequence of the Fast-Growing Marine Bacterium Vibrio natriegens Strain ATCC 14048.	Wang Z, Lin B, Hervey WJ 4th, Vora GJ	Genome Announc	10.1128/genomeA.00589-13	2013

References

#431	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 759
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37063	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121244	Collection of Institut Pasteur ; Curators of the CIP; CIP 103193
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio natriegens (DSM 759, ATCC 14048, NCMB 857)

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