Vibrio diazotrophicus (DSM 2604, ATCC 33466, IAM 14402)

Name: Vibrio diazotrophicus (DSM 2604, ATCC 33466, IAM 14402)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17257

Type strain

Strain Designation NSl, NS1

Culture col. no. DSM 2604 ATCC 33466 IAM 14402 CCUG 19114 NSl 6 more

NCBI tax ID(s) 1348635 685

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- R.R. Colwell, strain NSl <- M.L. Guerinot JCM <-- IAM 14402 <-- ATCC 33466 <-- M. L. Guerinot NS-1. CIP <- 1988, NCIB <- 1982, J.V. Lee, Preston Hall Hosp., Maidston, UK <- M.L. Guerinot: strain NS1

Links

Vibrio diazotrophicus NSl is an aerobe, Gram-negative, motile bacterium that was isolated from sea urchin gastrointestinal tract.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13866

LMG 7893,ATCC 33466,CCUG 19114,DSM 2604,NCMB 2169,CAIM:613,CIP 103191,IAM 14402,NCIMB 2169,CECT 627,CCRC 12911,BCRC 12911,JCM 21185,NBRC 103148

@ref 20215

Last LPSN update 2026-05-29 08:28:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio diazotrophicus

Full scientific name Vibrio diazotrophicus Guerinot et al. 1982

BacDive ID	Other strains from **Vibrio diazotrophicus** (2)	Type strain
17258	V. diazotrophicus Plll, DSM 2605
17259	V. diazotrophicus 1103, DSM 2606

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		99.006
125438	negative		99.8
118929	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1150	VIBRIO MEDIUM (DSMZ Medium 308)	Medium recipe at MediaDive	Name: VIBRIO MEDIUM (DSMZ Medium 308) Composition: NaCl 10.0 g/l Tryptone 10.0 g/l MgCl2 x 6 H2O 4.0 g/l KCl 1.0 g/l Distilled water
38119	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
118929	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1150	positive	growth	28
38119	positive	growth	25
46963	positive	growth	30-37
67770	positive	growth	25
118929	positive	growth	15-41
118929	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
46963	aerobe
118929	facultative anaerobe
125439	obligate aerobe	98.181

Spore formation

@ref	Spore formation	Confidence
125439		99.94
125438		90.535

Halophily

@ref	Salt	Growth	Tested relation	Concentration
118929	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
118929	16947 ChEBI	citrate	+	carbon source
118929	4853 ChEBI	esculin	+	hydrolysis
118929	17234 ChEBI	glucose	+	fermentation
118929	17716 ChEBI	lactose	+	fermentation
118929	17632 ChEBI	nitrate	+	reduction
118929	17632 ChEBI	nitrate	+	respiration
118929	16301 ChEBI	nitrite	-	reduction
118929	132112 ChEBI	sodium thiosulfate	-	builds gas from

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118929	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118929	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
118929	15688 ChEBI	acetoin	-
118929	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118929	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118929	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
118929	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118929	caseinase	-	3.4.21.50
118929	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
118929	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118929	gamma-glutamyltransferase	-	2.3.2.2
118929	gelatinase	-
118929	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
118929	lipase	-
68382	lipase (C 14)	-		from API zym
118929	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118929	ornithine decarboxylase	-	4.1.1.17
118929	oxidase	+
118929	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
118929	tryptophan deaminase	-
118929	tween esterase	+
118929	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	starch degradation	100	10 of 10
66794	lipoate biosynthesis	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	threonine metabolism	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	ubiquinone biosynthesis	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	photosynthesis	92.86	13 of 14
66794	citric acid cycle	92.86	13 of 14
66794	pentose phosphate pathway	90.91	10 of 11
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	vitamin B6 metabolism	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin B12 metabolism	79.41	27 of 34
66794	purine metabolism	78.72	74 of 94
66794	pyrimidine metabolism	77.78	35 of 45
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	phenylalanine metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	cyanate degradation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	enterobactin biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	sulfoquinovose degradation	66.67	2 of 3
66794	allantoin degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	non-pathway related	65.79	25 of 38
66794	histidine metabolism	65.52	19 of 29
66794	methionine metabolism	65.38	17 of 26
66794	oxidative phosphorylation	64.84	59 of 91
66794	glutathione metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	lysine metabolism	61.9	26 of 42
66794	urea cycle	61.54	8 of 13
66794	degradation of pentoses	60.71	17 of 28
66794	propionate fermentation	60	6 of 10
66794	degradation of sugar acids	60	15 of 25
66794	factor 420 biosynthesis	60	3 of 5
66794	tryptophan metabolism	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of sugar alcohols	56.25	9 of 16
66794	nitrate assimilation	55.56	5 of 9
66794	glycine metabolism	50	5 of 10
66794	degradation of hexoses	50	9 of 18
66794	pantothenate biosynthesis	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	ribulose monophosphate pathway	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	sulfate reduction	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	tyrosine metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sphingosine metabolism	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	phenol degradation	25	5 of 20
66794	androgen and estrogen metabolism	25	4 of 16
66794	alginate biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	carotenoid biosynthesis	22.73	5 of 22

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118929	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118929	not determinedn.d.	+	+	+	+	-	-	+	+	-	-	-	+	+	+	-	+	+	+	+	+	+	+	+	+	-	-	-	-	-	-	-	+	-	+	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	-	-	+	+	+	-	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	+	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Echinodermata

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1150	sea urchin gastrointestinal tract	Nova Scotia	Canada	CAN	North America
46963	Sea urchin gastrointestinal tract
67770	Sea urchin gastrointestinal tract	Nova Scotia	Canada	CAN	North America
118929	Animal, Sea urchin gastrointestinal tract	Nova Scotia	Canada	CAN	North America

Taxonmaps

69479

Global distribution of 16S sequence X74701 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	4875
Soil Samples	394
Animal Samples	3964
Plant Samples	152
Total Samples	9385

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1150	1	Risk group (German classification) According to TRBA 466
118929	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3845226v1 assembly for Vibrio diazotrophicus ATCC 33466	complete	GCA_038452265			685	95.93
67770	ASM74001v1 assembly for Vibrio diazotrophicus NBRC 103148	contig	GCA_000740015	1348635.3	2609460176	1348635	66.23

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Vibrio diazotrophicus strain ATCC 33466 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Glu gene, complete sequence	AF413003	461	685
20218	Vibrio diazotrophicus strain ATCC 33466 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence	AF413004	564	685
20218	Vibrio diazotrophicus 16S rRNA	D11201	213	685
20218	Vibrio diazotrophicus 16S rRNA	D11250	213	685
20218	Vibrio diazotrophicus 16S rRNA	D11299	193	685
20218	V.diazotrophicus 16S ribosomal RNA	X56577	1473	685
20218	V.diazotrophicus (ATCC 33466T) gene for 16S ribosomal RNA	X74701	1456	685
20218	Vibrio diazotrophicus gene for 16S rRNA, partial sequence, strain: NBRC 103148	AB681957	1468	685

GC content

@ref	GC-content (mol%)	Method
1150	45.9
67770	45.9	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3845226v1 assembly for Vibrio diazotrophicus ATCC 33466
NCBI: GCA_038452265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.18	no
125439	gram_stain	BacteriaNetⓘ	negative	99.01	no
125439	motility	BacteriaNetⓘ	yes	73.81	no
125439	spore_formation	BacteriaNetⓘ	no	99.94	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio diazotrophicus NBRC 103148
PATRIC: 1348635.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.80	no
125438	anaerobic	anaerobicⓘ	no	94.48	yes
125438	spore-forming	spore-formingⓘ	no	90.54	no
125438	aerobic	aerobicⓘ	no	64.08	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	87.42	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity.	Steward GF, Jenkins BD, Ward BB, Zehr JP.	Appl Environ Microbiol	10.1128/aem.70.3.1455-1465.2004	2004
	Characterization of cellular and molecular immune components of the painted white sea urchin Lytechinus pictus in response to bacterial infection.	Nesbit KT, Hargadon AC, Renaudin GD, Kraieski ND, Buckley KM, Darin E, Lee Y, Hamdoun A, Schrankel CS.	Immunol Cell Biol	10.1111/imcb.12828	2025
	Genetic and physiological insights into the diazotrophic activity of a non-cyanobacterial marine diazotroph.	Joublin-Delavat A, Touahri K, Cretin P, Morot A, Rodrigues S, Jesus B, Trigodet F, Delavat F.	Environ Microbiol	10.1111/1462-2920.16261	2022
	Perturbation of gut bacteria induces a coordinated cellular immune response in the purple sea urchin larva.	Ch Ho E, Buckley KM, Schrankel CS, Schuh NW, Hibino T, Solek CM, Bae K, Wang G, Rast JP.	Immunol Cell Biol	10.1038/icb.2016.51	2016
Phylogeny	Analysis of gyrB and toxR gene sequences of Vibrio hollisae and development of gyrB- and toxR-targeted PCR methods for isolation of V. hollisae from the environment and its identification.	Vuddhakul V, Nakai T, Matsumoto C, Oh T, Nishino T, Chen CH, Nishibuchi M, Okuda J.	Appl Environ Microbiol	10.1128/aem.66.8.3506-3514.2000	2000
Phylogeny	Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics.	Kim HJ, Ryu JO, Lee SY, Kim ES, Kim HY.	BMC Microbiol	10.1186/s12866-015-0577-3	2015
Phylogeny	Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities.	Kent AD, Smith DJ, Benson BJ, Triplett EW.	Appl Environ Microbiol	10.1128/aem.69.11.6768-6776.2003	2003
Phylogeny	Physiological diversity of the rhizosphere diazotroph assemblages of selected salt marsh grasses.	Bagwell CE, Piceno YM, Ashburne-Lucas A, Lovell CR.	Appl Environ Microbiol	10.1128/aem.64.11.4276-4282.1998	1998
	Diversity of heterotrophic nitrogen fixation genes in a marine cyanobacterial mat.	Zehr JP, Mellon M, Braun S, Litaker W, Steppe T, Paerl HW.	Appl Environ Microbiol	10.1128/aem.61.7.2527-2532.1995	1995
Enzymology	Rapid detection and identification of Vibrio anguillarum by using a specific oligonucleotide probe complementary to 16S rRNA.	Martinez-Picado J, Blanch AR, Jofre J.	Appl Environ Microbiol	10.1128/aem.60.2.732-737.1994	1994
Biotechnology	Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafoods.	Venkateswaran K, Kurusu T, Satake M, Shinoda S.	Appl Environ Microbiol	10.1128/aem.62.9.3516-3520.1996	1996
Phylogeny	Numerical taxonomy of phenanthrene-degrading bacteria isolated from the Chesapeake Bay.	West PA, Okpokwasili GC, Brayton PR, Grimes DJ, Colwell RR.	Appl Environ Microbiol	10.1128/aem.48.5.988-993.1984	1984
	Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
Enzymology	Direct detection of Salmonella spp. in estuaries by using a DNA probe.	Knight IT, Shults S, Kaspar CW, Colwell RR.	Appl Environ Microbiol	10.1128/aem.56.4.1059-1066.1990	1990
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
	Development and utilization of new O₂-independent bioreporters.	Agranier E, Cretin P, Joublin-Delavat A, Veillard L, Touahri K, Delavat F.	Microbiol Spectr	10.1128/spectrum.04091-23	2024
	Combined cellular and proteomics approach suggests differential processing of a native and a foreign vibrio in the sponge Halicondria panicea.	Marulanda-Gomez AM, Mueller B, Bayer K, Abukhalaf M, Cassidy L, Tholey A, Fraune S, Pita L, Hentschel U.	mBio	10.1128/mbio.01474-25	2025
	Genome Sequences and Metagenome-Assembled Genome Sequences of Microbial Communities Enriched on Phytoplankton Exometabolites.	Fu H, Smith CB, Sharma S, Moran MA.	Microbiol Resour Announc	10.1128/mra.00724-20	2020
Phylogeny	Vibrio ziniensis sp. nov., isolated from mangrove sediments.	Wu J, Qu W, Lai Q, Pei S, Zhang T, Zhuang Y, Chan Z, Zeng R	Int J Syst Evol Microbiol	10.1099/ijsem.0.004777	2021
Phylogeny	Vibrio oceanisediminis sp. nov., a nitrogen-fixing bacterium isolated from an artificial oil-spill marine sediment.	Kang SR, Srinivasan S, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000456	2015
Phylogeny	Vibrio plantisponsor sp. nov., a diazotrophic bacterium isolated from a mangrove associated wild rice (Porteresia coarctata Tateoka).	Rameshkumar N, Gomez-Gil B, Sproer C, Lang E, Dinesh Kumar N, Krishnamurthi S, Nair S, Roque A	Syst Appl Microbiol	10.1016/j.syapm.2011.02.005	2011

References

#1150	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2604
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38119	; Curators of the CIP;
#46963	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 19114
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118929	Collection of Institut Pasteur ; Curators of the CIP; CIP 103191
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio diazotrophicus (DSM 2604, ATCC 33466, IAM 14402)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

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Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

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Metabolite tests

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API biotype100

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Genome sequences

Genome browser: GCA_038452265

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