Name: Aliivibrio finisterrensis DSM 23419
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17254

Type strain:

Species: Aliivibrio finisterrensis

Culture col. no.: DSM 23419, CECT 7228, LMG 23869, CMJ 11.1

Strain history: <- CECT <- J. L. Romalde, University of Santiago de Compostela, Spain

NCBI tax ID(s): 511998 (species)

SI-ID 360631

LMG 23869, CECT 7228, CCUG 66489, DSM 23419

Section

Aliivibrio finisterrensis DSM 23419 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from cultured Manila clamp Ruditapes philippinarum.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Aliivibrio*
	Species	**Aliivibrio finisterrensis**
	Full Scientific Name (LPSN)	Aliivibrio finisterrensis Beaz-Hidalgo et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29312]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #29312]	Cell shape	rod-shaped

[Ref.: #29312]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.936

[Ref.: #29312]

Pigment production

yes

Multimedia content

[Ref.: #17196]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17196]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #17196]

Culture medium growth

[Ref.: #17196]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17196]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17196]			growth	28 °C
[Ref.: #29312]			growth	4 °C

[Ref.: #17196]	Temperature range	mesophilic
[Ref.: #29312]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29312]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29312]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29312]	cellobiose ChEBI	+	carbon source
[Ref.: #29312]	esculin ChEBI	+	hydrolysis
[Ref.: #29312]	fructose ChEBI	+	carbon source
[Ref.: #29312]	galactose ChEBI	+	carbon source
[Ref.: #29312]	glucose ChEBI	+	carbon source
[Ref.: #29312]	glycerol ChEBI	+	carbon source
[Ref.: #29312]	lactose ChEBI	+	carbon source
[Ref.: #29312]	maltose ChEBI	+	carbon source
[Ref.: #29312]	mannose ChEBI	+	carbon source
[Ref.: #29312]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29312]	ribose ChEBI	+	carbon source
[Ref.: #29312]	salicin ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29312]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29312]	catalase	+	1.11.1.6
[Ref.: #29312]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29312]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17196]	Sample type/isolated from	cultured Manila clamp Ruditapes philippinarum
[Ref.: #17196]	Host species	Ruditapes philippinarum
[Ref.: #17196]	Geographic location (country and/or sea, region)	north western coast
[Ref.: #17196]	Country	Spain
[Ref.: #17196]	Country ISO 3 Code	ESP
[Ref.: #17196]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Aquaculture
#Host	#Invertebrates (Other)	#Mollusca

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17196]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17196]	Aliivibrio finisterrensis strain CECT 7228 16S ribosomal RNA gene, partial sequence	EU541604	1524	ENA	511998 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliivibrio finisterrensis LMG 23869	GCA_008933155	contig	GenBank	511998 tax ID	*
[Ref.: #66792]	Aliivibrio finisterrensis strain LMG 23869	511998.14	wgs	PATRIC	511998 tax ID	*

[Ref.: #29312]

GC-content

38-42 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aliivibrio finisterrensis strain LMG 23869 PATRIC: 511998.14
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aliivibrio finisterrensis strain LMG 23869 PATRIC: 511998.14
[Ref.: #69480]	gram-positive	no	98.941	yes
[Ref.: #69480]	anaerobic	no	97.62	yes
[Ref.: #69480]	halophile	yes	75.893	no
[Ref.: #69480]	spore-forming	no	94.377	no
[Ref.: #69480]	glucose-util	yes	89.404	yes
[Ref.: #69480]	aerobic	yes	83.508	no
[Ref.: #69480]	thermophile	no	99.061	yes
[Ref.: #69480]	motile	yes	90.875	yes
[Ref.: #69480]	flagellated	yes	85.207	no
[Ref.: #69480]	glucose-ferment	yes	85.262	no

Availability in culture collections External links

[Ref.: #17196]

Culture collection no.

DSM 23419, CECT 7228, LMG 23869, CMJ 11.1

[Ref.: #86252]

SI-ID 360631

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliivibrio finisterrensis sp. nov., isolated from Manila clam, Ruditapes philippinarum and emended description of the genus Aliivibrio.	Beaz-Hidalgo R, Doce A, Balboa S, Barja JL, Romalde JL	Int J Syst Evol Microbiol	10.1099/ijs.0.010710-0	2009	*

References

#17196

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23419

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29312

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25725 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86252

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID360631.1 )

#25725

IJSEM 223 2010 ( DOI 10.1099/ijs.0.010710-0 , PubMed 19648323 )

* These data were automatically processed and therefore are not curated

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Aliivibrio finisterrensis strain LMG 23869

Aliivibrio finisterrensis strain LMG 23869

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