Salinivibrio proteolyticus (DSM 19052, CIP 109598, AF-2004)

Name: Salinivibrio proteolyticus (DSM 19052, CIP 109598, AF-2004)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17245

Type strain

Strain Designation AF-2004

Culture col. no. DSM 19052 CIP 109598 AF-2004

NCBI tax ID(s) 334715

Special Collections DSMZ CIP Literature strains

History DSMZ <- M. A. Amoozegar, University of Teheran <- A. Z. Fatemi CIP <- 2007, DSMZ <- M.A. Amoozegar, Tehran Univ., Iran: strain AF-2004

Links

Salinivibrio proteolyticus AF-2004 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from surface water of hyperslaine lake.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 354022

CIP 109598,DSM 19052

@ref 20215

Last LPSN update 2026-05-29 08:28:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Salinivibrio

Species Salinivibrio proteolyticus

Full scientific name Salinivibrio proteolyticus Ali Amoozegar et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32392	negative	1.65 µm	0.55 µm	rod-shaped
125439	negative				93.727
121971	negative			rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7783	REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
39802	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
121971	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7783	positive	growth	32
32392	positive	growth	10-45
32392	positive	optimum	33.5
39802	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32392	positive	optimum	8.25
32392	positive	growth	5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32392	facultative anaerobe
121971	facultative anaerobe
125439	obligate aerobe	90.138

Spore formation

@ref	Spore formation	Confidence
32392
125439		99.713

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32392	NaCl	positive	growth	01-17 %
32392	NaCl	positive	optimum	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32392	30089 ChEBI	acetate	+	carbon source
32392	23652 ChEBI	dextrin	+	carbon source
32392	28757 ChEBI	fructose	+	carbon source
32392	17234 ChEBI	glucose	+	carbon source
32392	17754 ChEBI	glycerol	+	carbon source
32392	24996 ChEBI	lactate	+	carbon source
32392	17306 ChEBI	maltose	+	carbon source
32392	29864 ChEBI	mannitol	+	carbon source
121971	17632 ChEBI	nitrate	-	reduction
121971	16301 ChEBI	nitrite	-	reduction
32392	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
32392	16136 ChEBI	hydrogen sulfide
121971	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32392	catalase	+	1.11.1.6
121971	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
32392	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
32392	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121971	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
121971	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121971	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Surface water
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7783	surface water of hyperslaine lake	Niriz, Lake Bakhtegan	Iran	IRN	Asia
121971	Environment, Water, Bakhtegan lake, hypersaline	South of Iran , Niriz	Iran	IRN	Asia	2005

Taxonmaps

69479

Global distribution of 16S sequence DQ092443 (>99% sequence identity) for Salinivibrio proteolyticus subclade from Microbeatlas

Aquatic Samples	0
Soil Samples	0
Animal Samples	2
Plant Samples	0
Total Samples	2

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7783	1	Risk group (German classification) According to TRBA 466
121971	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM199616v1 assembly for Salinivibrio proteolyticus DSM 19052	contig	GCA_001996165	2834265729	334715	66.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
32392	Salinivibrio proteolyticus strain AF-2004 16S ribosomal RNA gene, partial sequence	DQ092443	1489		334715
124043	Salinivibrio proteolyticus partial 16S rRNA gene, strain DSM 19052	LT627803	1347		334715

GC content

32392

GC-content (mol%)49.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM199616v1 assembly for Salinivibrio proteolyticus DSM 19052
NCBI: GCA_001996165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.14	no
125439	motility	BacteriaNetⓘ	yes	67.40	no
125439	gram_stain	BacteriaNetⓘ	negative	93.73	no
125439	spore_formation	BacteriaNetⓘ	no	99.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. vallismortis, and 29 New Isolates Belonging to the Genus Salinivibrio.	Lopez-Hermoso C, de la Haba RR, Sanchez-Porro C, Bayliss SC, Feil EJ, Ventosa A.	Genome Announc	10.1128/genomea.00244-17	2017
Enzymology	Optimization of an extracellular zinc-metalloprotease (SVP2) expression in Escherichia coli BL21 (DE3) using response surface methodology.	Beigi L, Karbalaei-Heidari HR, Kharrati-Kopaei M	Protein Expr Purif	10.1016/j.pep.2012.05.004	2012
Phylogeny	Salinivibrio sharmensis sp. nov., a novel haloalkaliphilic bacterium from a saline lake in Ras Mohammed Park (Egypt).	Romano I, Orlando P, Gambacorta A, Nicolaus B, Dipasquale L, Pascual J, Giordano A, Lama L	Extremophiles	10.1007/s00792-010-0349-9	2011
Phylogeny	Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand.	Chamroensaksri N, Tanasupawat S, Akaracharanya A, Visessanguan W, Kudo T, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.001768-0	2009
Phylogeny	Salinivibrio proteolyticus sp. nov., a moderately halophilic and proteolytic species from a hypersaline lake in Iran.	Amoozegar MA, Schumann P, Hajighasemi M, Fatemi AZ, Karbalaei-Heidari HR	Int J Syst Evol Microbiol	10.1099/ijs.0.65423-0	2008

References

#7783	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19052
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28616	IJSEM 1159 2008 ( DOI 10.1099/ijs.0.65423-0 , PubMed 18450706 )
#32392	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28616
#39802	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121971	Collection of Institut Pasteur ; Curators of the CIP; CIP 109598
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salinivibrio proteolyticus (DSM 19052, CIP 109598, AF-2004)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001996165

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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