Photobacterium swingsii (DSM 24669, CECT 7576, Mj283)

Name: Photobacterium swingsii (DSM 24669, CECT 7576, Mj283)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17239

Type strain

Strain Designation Mj283

Culture col. no. DSM 24669 CECT 7576 Mj283 CAIM 1393

NCBI tax ID(s) 680026

Special Collections DSMZ Literature strains

History <- B. Gomez-Gil, CAIM <- IRTA, Lab. of Pathology, Catalonia, Spain

Links

Photobacterium swingsii Mj283 is a facultative anaerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Hemolymph of spider crab .

Gram-negative ovoid-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376014

DSM 24669,CAIM 1393,CECT 7576

@ref 20215

Last LPSN update 2026-02-09 11:22:10

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Photobacterium

Species Photobacterium swingsii

Full scientific name Photobacterium swingsii Gomez-Gil et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
29734	negative	ovoid-shaped
125439	negative		98.5
125438	negative		99.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17727	REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17727	positive	growth	25
29734	positive	growth	04-35

Culture pH

@ref	Ability	Type	PH	PH range
29734	positive	growth	03-06	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29734	facultative anaerobe
125439	obligate aerobe	93.6

Spore formation

@ref	Spore formation	Confidence
125439		98

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29734	30089 ChEBI	acetate	+	carbon source
29734	16449 ChEBI	alanine	+	carbon source
29734	22599 ChEBI	arabinose	+	carbon source
29734	35391 ChEBI	aspartate	+	carbon source
29734	17057 ChEBI	cellobiose	+	carbon source
29734	16947 ChEBI	citrate	+	carbon source
29734	28757 ChEBI	fructose	+	carbon source
29734	28260 ChEBI	galactose	+	carbon source
29734	5417 ChEBI	glucosamine	+	carbon source
29734	17234 ChEBI	glucose	+	carbon source
29734	29987 ChEBI	glutamate	+	carbon source
29734	17754 ChEBI	glycerol	+	carbon source
29734	15428 ChEBI	glycine	+	carbon source
29734	17306 ChEBI	maltose	+	carbon source
29734	37684 ChEBI	mannose	+	carbon source
29734	28053 ChEBI	melibiose	+	carbon source
29734	17632 ChEBI	nitrate	+	reduction
29734	17272 ChEBI	propionate	+	carbon source
29734	15361 ChEBI	pyruvate	+	carbon source
29734	33942 ChEBI	ribose	+	carbon source
29734	17814 ChEBI	salicin	+	carbon source
29734	30031 ChEBI	succinate	+	carbon source
29734	26986 ChEBI	threonine	+	carbon source
29734	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29734	acid phosphatase	+	3.1.3.2
29734	alkaline phosphatase	+	3.1.3.1
29734	catalase	+	1.11.1.6
29734	cytochrome oxidase	+	1.9.3.1
29734	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Crustacea
#Host Body Product	#Fluids	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
17727	Hemolymph of spider crab (Maja brachydactyla)	Maja brachydactyla	Canary Islands	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence GQ386822 (>99% sequence identity) for Photobacterium swingsii from Microbeatlas

Aquatic Samples	1942
Soil Samples	228
Animal Samples	1969
Plant Samples	99
Total Samples	4238

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17727	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434671v1 assembly for Photobacterium swingsii CECT 7576	complete	GCA_024346715	680026.14	8048928574	680026	97.07
66792	ASM302643v1 assembly for Photobacterium swingsii DSM 24669	contig	GCA_003026435	680026.8	2858407585	680026	68.81
66792	CAIM1393T.ver1 assembly for Photobacterium swingsii CAIM 1393	contig	GCA_001077885	680026.4	2648501459	680026	48.52

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29734	Photobacterium swingsii strain CAIM 1439 16S ribosomal RNA gene, partial sequence	GQ386816	1477		680026
17727	Photobacterium swingsii strain CAIM 1393 16S ribosomal RNA gene, partial sequence	GQ386822	1445		680026

GC content

29734

GC-content (mol%)46.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Photobacterium swingsii CECT 7576
NCBI: GCA_024346715

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.00	no
125439	motility	BacteriaNetⓘ	yes	80.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Photobacterium swingsii CECT 7576
NCBI: GCA_024346715.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	96.90	yes
125438	aerobic	aerobicⓘ	no	68.40	no
125438	spore-forming	spore-formingⓘ	no	87.23	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	88.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Prokaryotic viperins produce diverse antiviral molecules.	Bernheim A, Millman A, Ofir G, Meitav G, Avraham C, Avraham C, Shomar H, Rosenberg MM, Tal N, Melamed S, Amitai G, Sorek R.	Nature	10.1038/s41586-020-2762-2	2021
Phylogeny	Photobacterium swingsii sp. nov., isolated from marine organisms.	Gomez-Gil B, Roque A, Rotllant G, Peinado L, Romalde JL, Doce A, Cabanillas-Beltran H, Chimetto LA, Thompson FL	Int J Syst Evol Microbiol	10.1099/ijs.0.019687-0	2010

References

#17727	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24669
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26116	IJSEM 315 2011 ( DOI 10.1099/ijs.0.019687-0 , PubMed 20228205 )
#29734	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26116
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Photobacterium swingsii (DSM 24669, CECT 7576, Mj283)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024346715

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media