Vibrio damselae (DSM 7482, ATCC 33539, CCUG 13626)

Name: Vibrio damselae (DSM 7482, ATCC 33539, CCUG 13626)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17223

Type strain

Culture col. no. DSM 7482 ATCC 33539 CCUG 13626 KCTC 12323 LMG 7892 3 more

NCBI tax ID(s) 38293

Special Collections DSMZ CCUG KCTC CIP

History <- ATCC <- CDC, 2588-80 <- D.T. Fisher CIP <- 1987, NCIB, Listonella damsela <- 1983, ATCC <- 1980, CDC: strain 2588-80, Vibrio damsela

Links

Vibrio damselae DSM 7482 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from fish ulcer.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 3831

LMG 7892,ATCC 33539,CCUG 13626,NCMB 2184,CAIM 331,CIP 102761,DSM 7482,NCIMB 2184,IFO 15633,CECT 626,KCTC 2734,NCTC 11647,NBRC 15633,BCRC 12906,CCRC 12906,KCTC 12323

@ref 20215

Last LPSN update 2025-12-16 09:51:02

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio damselae

Full scientific name Vibrio damselae corrig. Love et al. 1982

Synonyms (6)

Vibrio damsela
Photobacterium histaminum
Listonella damsela
Listonella damselae
Photobacterium damsela
Photobacterium damselae

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		99.917
125439	negative		99.2
118852	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3181	MARINE AGAR (DSMZ Medium 123)	Medium recipe at MediaDive	Name: MARINE AGAR (DSMZ Medium 123) Composition: NaCl 24.0 g/l Agar 15.0 g/l MgCl2 x 6 H2O 11.0 g/l Bacto peptone 5.0 g/l Na2SO4 4.0 g/l CaCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l KCl 0.7 g/l KBr 0.1 g/l SrCl2 x 6 H2O 0.04 g/l H3BO3 0.03 g/l NaSiO3 x 9 H2O 0.005 g/l NaF 0.003 g/l NH4NO3 0.002 g/l Fe(III)PO4 x 4 H2O 0.001 g/l Distilled water
38108	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
118852	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3181	positive	growth	26	mesophilic
38108	positive	growth	20	psychrophilic
45994	positive	growth	25	mesophilic
118852	positive	growth	25-37	mesophilic
118852	negative	growth	5
118852	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
45994	aerobe
118852	facultative anaerobe
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
118852	NaCl	positive	growth	0-6 %
118852	NaCl		growth	8 %
118852	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
118852	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
118852	4853 ChEBI	esculin	+	hydrolysis
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
118852	17234 ChEBI	glucose	+	fermentation
118852	17234 ChEBI	glucose	+	degradation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
118852	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
118852	17632 ChEBI	nitrate	+	reduction
118852	17632 ChEBI	nitrate	+	respiration
118852	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
118852	132112 ChEBI	sodium thiosulfate	-	builds gas from
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118852	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118852	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
118852	15688 ChEBI	acetoin	+
118852	17234 ChEBI	glucose		+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118852	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118852	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
118852	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118852	caseinase	-	3.4.21.50
118852	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
118852	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118852	gamma-glutamyltransferase	-	2.3.2.2
118852	gelatinase	-
118852	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
118852	lipase	-
68382	lipase (C 14)	-		from API zym
118852	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
118852	ornithine decarboxylase	-	4.1.1.17
118852	oxidase	+
118852	phenylalanine ammonia-lyase	-	4.3.1.24
118852	protease	-
68382	trypsin	-	3.4.21.4	from API zym
118852	tryptophan deaminase	-
118852	tween esterase	+
118852	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118852	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118852	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	+/-	+/-	+/-	+	+	-	-	-	+/-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118852	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	-	+	+	+	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3181	fish ulcer	California	USA	USA	North America
45994	Damselfish shin ulcer (Chromis punctipinnis)		USA	USA	North America
118852	Animal, Damsel fish, skin ulcer

Taxonmaps

69479

Global distribution of 16S sequence X74700 (>99% sequence identity) for Photobacterium damselae subclade from Microbeatlas

Aquatic Samples	3204
Soil Samples	214
Animal Samples	2991
Plant Samples	45
Total Samples	6454

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3181	2	Risk group (German classification) According to TRBA 466
118852	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM17679v1 assembly for Photobacterium damselae subsp. damselae CIP 102761	scaffold	GCA_000176795	675817.3	647000291	675817	77.09
66792	ASM302681v1 assembly for Photobacterium damselae ATCC 33539	contig	GCA_003026815	38293.28	2858417275	38293	54.03
124043	CFSAN029439_01.0 assembly for Photobacterium damselae subsp. damselae ATCC 33539	contig	GCA_000950315	85581.9	2773857966	85581	35.33

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Photobacterium damselae subsp. damselae gene for 16S rRNA, partial sequence	AB032015	1550	85581
20218	Photobacterium damselae subsp. damselae DNA, 16S-23S rRNA intergenic spacer, partial sequence, strain: ATCC 33539	AB255703	238	85581
20218	Photobacterium damselae subsp. damselae strain ATCC 33539 16S ribosomal RNA gene, partial sequence	AY191126	639	85581
20218	Listonella damsela 16S rRNA	D11179	150	85581
20218	Listonella damsela 16S rRNA	D11228	213	85581
20218	Listonella damsela 16S rRNA	D11277	190	85581
20218	Photobacterium damselae strain ATCC 33539 16S ribosomal RNA gene, partial sequence	FJ971859	807	38293
20218	V.damsela (ATCC 33539T) gene for 16S ribosomal RNA	X74700	1466	85581
20218	Photobacterium damselae subsp. damselae gene for 16S rRNA, partial sequence, strain: NBRC 15633	AB680919	1477	85581
20218	L.damsela (ssp. NCMB 2184) gene for 16S ribosomal RNA	X71835	662	85581
124043	Photobacterium damselae strain ATCC 33539 16S ribosomal RNA gene, partial sequence.	OQ921689	1441	38293
124043	Photobacterium damselae strain ATCC 33539 16S ribosomal RNA gene, partial sequence.	MG722657	416	38293

GC content

@ref	GC-content (mol%)	Method
3181	43.0	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Photobacterium damselae ATCC 33539
NCBI: GCA_003026815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	75.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Photobacterium damselae strain ATCC 33539
PATRIC: 38293.28

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.92	no
125438	anaerobic	anaerobicⓘ	no	88.35	yes
125438	spore-forming	spore-formingⓘ	no	89.73	no
125438	aerobic	aerobicⓘ	no	66.71	no
125438	thermophilic	thermophileⓘ	no	99.49	yes
125438	flagellated	motile2+ⓘ	yes	80.77	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Photobacterium damselae subsp. damselae bacteraemia in a patient with liver cirrhosis.	Hayano S, Masaki T, Tadakuma R, Kashima M.	BMJ Case Rep	10.1136/bcr-2021-242580	2021
Enzymology	16S rRNA gene sequence analysis of Photobacterium damselae and nested PCR method for rapid detection of the causative agent of fish pasteurellosis.	Osorio CR, Collins MD, Toranzo AE, Barja JL, Romalde JL.	Appl Environ Microbiol	10.1128/aem.65.7.2942-2946.1999	1999
	Phage therapy as an approach to prevent Vibrio anguillarum infections in fish larvae production.	Silva YJ, Costa L, Pereira C, Mateus C, Cunha A, Calado R, Gomes NC, Pardo MA, Hernandez I, Almeida A.	PLoS One	10.1371/journal.pone.0114197	2014
	Culture conditions of Roseobacter strain 27-4 affect its attachment and biofilm formation as quantified by real-time PCR.	Bruhn JB, Haagensen JA, Bagge-Ravn D, Gram L.	Appl Environ Microbiol	10.1128/aem.72.4.3011-3015.2006	2006
Phylogeny	Characterization of the 23S and 5S rRNA genes and 23S-5S intergenic spacer region (ITS-2) of Photobacterium damselae.	Osorio CR, Collins MD, Romalde JL, Toranzo AE	Dis Aquat Organ	10.3354/dao061033	2004
Phylogeny	Photobacterium histaminum Okuzumi et al. 1994 is a later subjective synonym of Photobacterium damselae subsp. damselae (Love et al. 1981) Smith et al. 1991.	Kimura B, Hokimoto S, Takahashi H, Fujii T	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1339	2000
	Internalization and cytotoxicity are important virulence mechanisms in Vibrio-fish epithelial cell interactions.	Wang XH, Oon HL, Ho GWP, Wong WSF, Lim TM, Leung KY	Microbiology (Reading)	10.1099/00221287-144-11-2987	1998
Phylogeny	Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al.) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov.	Gauthier G, Lafay B, Ruimy R, Breittmayer V, Nicolas JL, Gauthier M, Christen R	Int J Syst Bacteriol	10.1099/00207713-45-1-139	1995
Phylogeny	Evaluation of the genus Listonella and reassignment of Listonella damsela (Love et al.) MacDonell and Colwell to the genus Photobacterium as Photobacterium damsela comb. nov. with an emended description.	Smith SK, Sutton DC, Fuerst JA, Reichelt JL	Int J Syst Bacteriol	10.1099/00207713-41-4-529	1991

References

#3181	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7482
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38108	; Curators of the CIP;
#45994	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13626
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118852	Collection of Institut Pasteur ; Curators of the CIP; CIP 102761
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Content

About us

Vibrio damselae (DSM 7482, ATCC 33539, CCUG 13626)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000176795

16S sequences

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