Name: Photobacterium indicum DSM 5151
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17222

Type strain:

Species: Photobacterium indicum

Culture col. no.: DSM 5151, ATCC 19614

Strain history: <- ATCC <- R.M. Johnson, Arizona State University

NCBI tax ID(s): 81447 (species)

SI-ID 37034

ATCC 19614, DSM 5151, NCIMB 2221, IFO 14233, NBRC 14233, KCTC 12355, BCRC 15012, CCRC 15012, LMG 22857

Section

Photobacterium indicum DSM 5151 is a mesophilic, motile bacterium that was isolated from marine mud.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium indicum**
	Full Scientific Name (LPSN)	Photobacterium indicum (Johnson and Weisrock 1969) Ivanova et al. 2004

	Synonym	Hyphomicrobium indicum
	Synonym	Photobacterium indicum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.974

[Ref.: #69480]	Motility	yes Confidence in %96.89

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1933]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #1933]

Culture medium growth

[Ref.: #1933]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1933]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1933]			growth	25 °C

[Ref.: #1933]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.446

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1933]	Sample type/isolated from	marine mud
[Ref.: #1933]	Geographic location (country and/or sea, region)	Indian Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB159513 (>99% sequence identity) for Photobacterium from Microbeatlas

Aquatic Samples	426
Soil Samples	122
Animal Samples	704
Plant Samples	11
Total Samples	1263

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1933]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Photobacterium indicum gene for 16S rRNA, partial sequence	AB016982	1408	ENA	81447 tax ID	*
[Ref.: #20218]	Photobacterium indicum gene for 16S rRNA, partial sequence	AB159513	1402	ENA	81447 tax ID	*
[Ref.: #20218]	Photobacterium indicum gene for 16S rRNA, partial sequence, strain: NBRC 14233	AB680594	1404	ENA	81447 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photobacterium indicum ATCC 19614	GCA_003026215	contig	GenBank	81447 tax ID	*
[Ref.: #66792]	Photobacterium indicum strain ATCC 19614	81447.4	wgs	PATRIC	81447 tax ID	*
[Ref.: #66792]	Photobacterium indicum ATCC 19614	2902459631	draft	JGI IMG/M	81447 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Photobacterium indicum strain ATCC 19614 PATRIC: 81447.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photobacterium indicum strain ATCC 19614 PATRIC: 81447.4
[Ref.: #69480]	motile	yes	91.405	no
[Ref.: #69480]	flagellated	yes	89.551	no
[Ref.: #69480]	gram-positive	no	98.624	no
[Ref.: #69480]	anaerobic	no	97.655	no
[Ref.: #69480]	halophile	no	70.251	no
[Ref.: #69480]	spore-forming	no	93.626	no
[Ref.: #69480]	glucose-util	yes	91.326	no
[Ref.: #69480]	aerobic	yes	60.098	no
[Ref.: #69480]	thermophile	no	99.581	no
[Ref.: #69480]	glucose-ferment	yes	86.657	no

Availability in culture collections External links

[Ref.: #1933]

Culture collection no.

DSM 5151, ATCC 19614

[Ref.: #86221]

SI-ID 37034

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium lipolyticum sp. nov., a bacterium with lipolytic activity isolated from the Yellow Sea in Korea.	Yoon JH, Lee JK, Kim YO, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63215-0	2005	*
Phylogeny	Transfer of Hyphomicrobium indicum to the genus Photobacterium as Photobacterium indicum comb. nov.	Xie CH, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.63159-0	2004	*

References

#1933

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5151

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86221

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37034.1 )

* These data were automatically processed and therefore are not curated

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Photobacterium indicum strain ATCC 19614

Photobacterium indicum strain ATCC 19614

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