Sporomusa rhizae (DSM 16652, ATCC BAA-1028, RS)

Name: Sporomusa rhizae (DSM 16652, ATCC BAA-1028, RS)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17202

Type strain

Strain Designation RS

Culture col. no. DSM 16652 ATCC BAA-1028 RS

NCBI tax ID(s) 357999

Special Collections DSMZ

Links

Sporomusa rhizae RS is an anaerobe, mesophilic prokaryote that was isolated from root of Juncus roemerianus.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403513

ATCC BAA-1028,DSM 16652

@ref 20215

Last LPSN update 2025-12-16 09:51:02

Domain Bacillati

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Sporomusaceae

Genus Sporomusa

Species Sporomusa rhizae

Full scientific name Sporomusa rhizae Gößner et al. 2006

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6552	SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)		Medium recipe at MediaDive	Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c; with strain-specific modifications) Composition: NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l N-Acetyl-D-glucosamine 1.10448 g/l Na2CO3 0.995025 g/l NH4Cl 0.497512 g/l MgSO4 x 7 H2O 0.497512 g/l K2HPO4 0.348259 g/l Na2S x 9 H2O 0.298507 g/l L-Cysteine HCl x H2O 0.298507 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l Sodium resazurin 0.000497512 g/l NaOH 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l Pyridoxine hydrochloride 9.95025e-05 g/l MnCl2 x 4 H2O 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Biotin 1.99005e-05 g/l Folic acid 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6552	positive	growth	35	mesophilic

Physiology and metabolism

Oxygen tolerance

6552

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
6552	root of Juncus roemerianus	Juncus roemerianus	South Carolina	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AM158322 (>99% sequence identity) for Sporomusa rhizae subclade from Microbeatlas

Aquatic Samples	44
Soil Samples	96
Animal Samples	15
Plant Samples	3
Total Samples	158

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6552	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	SRRS assembly for Sporomusa rhizae DSM 16652	complete	GCA_041428845	357999	93.24

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6552	Sporomusa rhizae partial 16S rRNA gene, type strain RS	AM158322	1387		357999

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Using gas mixtures of CO, CO₂ and H₂ as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.	Takors R, Kopf M, Mampel J, Bluemke W, Blombach B, Eikmanns B, Bengelsdorf FR, Weuster-Botz D, Durre P.	Microb Biotechnol	10.1111/1751-7915.13270	2018

References

#6552	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16652
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sporomusa rhizae (DSM 16652, ATCC BAA-1028, RS)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_041428845

16S sequences

Genome-based predictions

Literature

Literature

References

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