Veillonella denticariosi (JCM 15641, DSM 19009, CCUG 54362)

Name: Veillonella denticariosi (JCM 15641, DSM 19009, CCUG 54362)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17179

Type strain

Strain Designation RBV106, RBV 106

Culture col. no. JCM 15641 DSM 19009 CCUG 54362 CIP 109448 RBV106 2 more

NCBI tax ID(s) 1298594 419208

Special Collections DSMZ CCUG JCM CIP Literature strains KCTC

History <- R. Byun; RBV106 2007, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 129.06, "Veillonella dentocariosa" CCUG 54362 <-- R. Byun RBV106. CIP <- 2007, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 129.06, "Veillonella dentocariosa"

Links

Veillonella denticariosi RBV106 is an anaerobe, Gram-negative, coccus-shaped bacterium that was isolated from human carious dentine.

Gram-negative coccus-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 302971

CCUG 54362,CIP 109448,DSM 19009,JCM 15641,KCTC 15017

@ref 20215

Last LPSN update 2026-02-09 11:22:09

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Veillonellales

Family Veillonellaceae

Genus Veillonella

Species Veillonella denticariosi

Full scientific name Veillonella denticariosi Byun et al. 2007

BacDive ID	Other strains from **Veillonella denticariosi** (1)	Type strain
17180	V. denticariosi RBV81, DSM 19010, CCUG 54361, CIP 109449

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
32189	negative	coccus-shaped
125438			90.368
125438	negative		92.109
125439	positive		93.7
118910	negative	coccus-shaped

Colony morphology

60153

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7828	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7828	VEILLONELLA MEDIUM (DSMZ Medium 136)	Medium recipe at MediaDive	Name: VEILLONELLA MEDIUM (DSMZ Medium 136) Composition: Na-(DL)-lactate 7.5 g/l Trypticase 5.0 g/l Yeast extract 3.0 g/l Glucose 1.0 g/l Na-thioglycolate 0.75 g/l Putrescine 0.003 g/l Resazurin 0.001 g/l Tween 80 Distilled water
37559	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
118910	CIP Medium 20	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7828	positive	growth	37
37559	positive	growth	37
60153	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
7828	anaerobe
32189	anaerobe
60153	anaerobe
118910	anaerobe
125439	anaerobe	95.4

Spore formation

32189

Spore formationno

Observation

32189

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
32189	24996 ChEBI	lactate	+	carbon source
32189	25115 ChEBI	malate	+	carbon source
32189	17632 ChEBI	nitrate	+	reduction
68380	17632 ChEBI	nitrate	+	reduction	from API rID32A
118910	17632 ChEBI	nitrate	+	reduction
118910	16301 ChEBI	nitrite	-	reduction
32189	17272 ChEBI	propionate	+	carbon source
32189	15361 ChEBI	pyruvate	+	carbon source
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
118910	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	-	3.2.1.23	from API zym
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
118910	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118910	oxidase	-
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
118910	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118910	-	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
7828	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Tooth
#Host Body-Site	#Other	#Wound

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
7828	human carious dentine		Sydney	Australia	AUS	Australia and Oceania
60153	Human carious dentin,extracted tooth	2005-08-01	NSW,Sydney	Australia	AUS	Australia and Oceania
67770	Human carious dentine
118910	Human, Tooth		Wentworthville	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence LC269263 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	1
Soil Samples	1
Animal Samples	1594
Plant Samples	4
Total Samples	1600

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
7828	yes, in single cases	1	Risk group (German classification) According to TRBA 466
118910		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM295985v1 assembly for Veillonella denticariosi JCM 15641	contig	GCA_002959855	1298594.4		1298594	77.99
67770	ASM131246v1 assembly for Veillonella denticariosi JCM 15641	contig	GCA_001312465	1298594.3	2734481902	1298594	12.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7828	Veillonella denticariosi strain RBV106 16S ribosomal RNA gene, partial sequence	EF185167	1497		419208
67770	Veillonella denticariosi gene for 16S ribosomal RNA, partial sequence, strain: JCM 15641	LC269263	1414		419208

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Veillonella denticariosi JCM 15641
NCBI: GCA_001312465

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	85.80	no
125439	motility	BacteriaNetⓘ	no	74.00	no
125439	gram_stain	BacteriaNetⓘ	positive	93.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	95.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Veillonella denticariosi JCM 15641
PATRIC: 1298594.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	92.11	yes
125438	anaerobic	anaerobicⓘ	yes	87.84	no
125438	spore-forming	spore-formingⓘ	no	81.74	yes
125438	aerobic	aerobicⓘ	no	95.00	yes
125438	thermophilic	thermophileⓘ	no	95.65	no
125438	flagellated	motile2+ⓘ	no	90.37	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Gut commensals-derived succinate impels colonic inflammation in ulcerative colitis.	Dalal R, Sadhu S, Batra A, Goswami S, Dandotiya J, K V V, Yadav R, Singh V, Chaturvedi K, Kannan R, Kumar S, Kumar Y, Rathore DK, Salunke DB, Ahuja V, Awasthi A.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00672-3	2025
Metabolism	Comparative Pan-Genome Analysis of Oral Veillonella Species.	Mashima I, Liao YC, Lin CH, Nakazawa F, Haase EM, Kiyoura Y, Scannapieco FA.	Microorganisms	10.3390/microorganisms9081775	2021
Pathogenicity	Orally administered Odoribacter laneus improves glucose control and inflammatory profile in obese mice by depleting circulating succinate.	Huber-Ruano I, Calvo E, Mayneris-Perxachs J, Rodriguez-Pena MM, Ceperuelo-Mallafre V, Cedo L, Nunez-Roa C, Miro-Blanch J, Arnoriaga-Rodriguez M, Balvay A, Maudet C, Garcia-Roves P, Yanes O, Rabot S, Grimaud GM, De Prisco A, Amoruso A, Fernandez-Real JM, Vendrell J, Fernandez-Veledo S.	Microbiome	10.1186/s40168-022-01306-y	2022
Phylogeny	Aequorivita viscosa sp. nov., isolated from an intertidal zone, and emended descriptions of Aequorivita antarctica and Aequorivita capsosiphonis.	Liu JJ, Zhang XQ, Pan J, Sun C, Zhang Y, Li CQ, Zhu XF, Wu M.	Int J Syst Evol Microbiol	10.1099/ijs.0.049635-0	2013
Phylogeny	Veillonella denticariosi sp. nov., isolated from human carious dentine.	Byun R, Carlier JP, Jacques NA, Marchandin H, Hunter N	Int J Syst Evol Microbiol	10.1099/ijs.0.65096-0	2007

References

#7828	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19009
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28431	IJSEM 2844 2007 ( DOI 10.1099/ijs.0.65096-0 , PubMed 18048736 )
#32189	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28431
#37559	; Curators of the CIP;
#60153	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54362
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118910	Collection of Institut Pasteur ; Curators of the CIP; CIP 109448
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Veillonella denticariosi (JCM 15641, DSM 19009, CCUG 54362)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002959855

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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