Name: Veillonella rogosae CF100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17178

Type strain:

Species: Veillonella rogosae

Strain Designation: CF100

Culture col. no.: DSM 18960, CCUG 54233, KCTC 5967, JCM 15642

Strain history: <- DSM <- D Beighton

NCBI tax ID(s): 1298595 (strain), 423477 (species)

SI-ID 400356

DSM 18960, CCUG 54233

Section

Veillonella rogosae CF100 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from dental plaque.

coccus-shaped
Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Veillonellales*
	Family	*Veillonellaceae*
	Genus	*Veillonella*
	Species	**Veillonella rogosae**
	Full Scientific Name (LPSN)	Veillonella rogosae Arif et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32187]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.95

[Ref.: #32187]	Cell width	0.4 µm

[Ref.: #32187]	Cell shape	coccus-shaped

[Ref.: #32187]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.201

[Ref.: #60114]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7805]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #7805]

Culture medium growth

[Ref.: #7805]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7805]

Culture medium composition

expand / minimize

[Ref.: #7805]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7805]

Culture medium growth

[Ref.: #7805]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7805]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7805]	growth	37 °C
[Ref.: #60114]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #7805]	Temperature range	mesophilic
[Ref.: #60114]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7805]	Oxygen tolerance	anaerobe
[Ref.: #60114]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.648

[Ref.: #32187]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.957

[Ref.: #32187]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #32187]	nitrate ChEBI	+	reduction
[Ref.: #68380]	nitrate ChEBI	+	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #32187]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #7805]	12262	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+/-	-	-	-	-	-	+/-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7805]	Sample type/isolated from	dental plaque
[Ref.: #7805]	Country	United Kingdom
[Ref.: #7805]	Country ISO 3 Code	GBR
[Ref.: #7805]	Continent	Europe

[Ref.: #60114]	Sample type/isolated from	Human supragingival plaque,caries free child
[Ref.: #60114]	Sampling date	2005
[Ref.: #60114]	Geographic location (country and/or sea, region)	London
[Ref.: #60114]	Country	United Kingdom
[Ref.: #60114]	Country ISO 3 Code	GBR
[Ref.: #60114]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Supra-gingival plaque of children

[Ref.: #67771]	Sample type/isolated from	From dsupra-gingival plaque of a child
[Ref.: #67771]	Country	United Kingdom
[Ref.: #67771]	Country ISO 3 Code	GBR
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

#Plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF108443 (>99% sequence identity) for Veillonella from Microbeatlas

Aquatic Samples	6
Soil Samples
Animal Samples	756
Plant Samples
Total Samples	762

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7805]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7805]	Veillonella rogosae strain CF100 16S ribosomal RNA gene, partial sequence	EF108443	1344	ENA	423477 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Veillonella rogosae JCM 15642	GCA_002959775	contig	GenBank	1298595 tax ID
[Ref.: #67771]	Veillonella rogosae JCM 15642	GCA_001312485	contig	GenBank	1298595 tax ID
[Ref.: #66792]	Veillonella rogosae JCM 15642	1298595.4	wgs	PATRIC	1298595 tax ID	*
[Ref.: #66792]	Veillonella rogosae JCM 15642	1298595.6	wgs	PATRIC	1298595 tax ID	*
[Ref.: #66792]	Veillonella rogosae JCM 15642	2734481903	draft	JGI IMG/M	1298595 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Veillonella rogosae JCM 15642 PATRIC: 1298595.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Veillonella rogosae JCM 15642 PATRIC: 1298595.4
[Ref.: #69480]	motile	no	90.819	yes
[Ref.: #69480]	gram-positive	no	93.562	no
[Ref.: #69480]	anaerobic	yes	99.422	yes
[Ref.: #69480]	aerobic	no	96.883	yes
[Ref.: #69480]	halophile	no	83.102	no
[Ref.: #69480]	spore-forming	no	92.425	yes
[Ref.: #69480]	thermophile	no	97.596	yes
[Ref.: #69480]	glucose-util	yes	54.225	no
[Ref.: #69480]	flagellated	no	96.468	yes
[Ref.: #69480]	glucose-ferment	yes	53.255	no

Availability in culture collections External links

[Ref.: #7805]

Culture collection no.

DSM 18960, CCUG 54233, KCTC 5967, JCM 15642

[Ref.: #86177]

SI-ID 400356

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Veillonella rogosae sp. nov., an anaerobic, Gram-negative coccus isolated from dental plaque.	Arif N, Do T, Byun R, Sheehy E, Clark D, Gilbert SC, Beighton D	Int J Syst Evol Microbiol	10.1099/ijs.0.65093-0	2008	*

References

#7805

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18960

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32187

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28429 (see below)

#60114 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54233

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86177

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400356.1 )

#28429

IJSEM 581 2008 ( DOI 10.1099/ijs.0.65093-0 , PubMed 18319459 )

* These data were automatically processed and therefore are not curated

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Veillonella rogosae JCM 15642

Veillonella rogosae JCM 15642

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