Veillonella rodentium (DSM 20737, ATCC 17743, NCTC 12018)

Name: Veillonella rodentium (DSM 20737, ATCC 17743, NCTC 12018)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17176

Type strain

Strain Designation HV 19

Culture col. no. DSM 20737 ATCC 17743 NCTC 12018 HV 19

NCBI tax ID(s) 248315

Special Collections DSMZ

History DSMZ <- NCTC <- ATCC <- M. Rogosa; HV 19

Links

Veillonella rodentium HV 19 is an anaerobe bacterium that was isolated from hamster mouth.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44530

ATCC 17743,NCTC 12018,DSM 20737

@ref 20215

Last LPSN update 2026-05-29 08:28:57

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Veillonellales

Family Veillonellaceae

Genus Veillonella

Species Veillonella rodentium

Full scientific name Veillonella rodentium (Rogosa 1965) Mays et al. 1982

Synonyms (1)

Veillonella parvula subsp. rodentium

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	90.634

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9047	VEILLONELLA MEDIUM (DSMZ Medium 136)		Medium recipe at MediaDive	Name: VEILLONELLA MEDIUM (DSMZ Medium 136) Composition: Na-(DL)-lactate 7.5 g/l Trypticase 5.0 g/l Yeast extract 3.0 g/l Glucose 1.0 g/l Na-thioglycolate 0.75 g/l Putrescine 0.003 g/l Resazurin 0.001 g/l Tween 80 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9047	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
9047	anaerobe
125439	anaerobe	96.657

Spore formation

@ref	Spore formation	Confidence
125439		91.816

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	+	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
9047	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
9047	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Oral cavity and airways	#Mouth

Isolation

9047

Sample typehamster mouth

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9047	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	51342_C02 assembly for Veillonella rodentium NCTC12018	complete	GCA_900187285	248315.3	2814123218	248315	99.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
9047	Veillonella rodentium 16S ribosomal RNA gene, partial sequence	AY514996	1307		248315

GC content

9047

GC-content (mol%)42.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 51342_C02 assembly for Veillonella rodentium NCTC12018
BV-BRC: 248315.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	96.66	no
125439	motility	BacteriaNetⓘ	no	84.23	no
125439	gram_stain	BacteriaNetⓘ	positive	83.23	no
125439	spore_formation	BacteriaNetⓘ	no	91.82	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Veillonella rodentium NCTC12018
NCBI: GCA_900187285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	90.63	no
125438	anaerobic	anaerobicⓘ	yes	79.84	yes
125438	aerobic	aerobicⓘ	no	89.39	yes
125438	spore-forming	spore-formingⓘ	no	77.65	no
125438	thermophilic	thermophileⓘ	no	93.94	yes
125438	flagellated	motile2+ⓘ	no	89.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA.	Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Dymock D, Wade WG.	Appl Environ Microbiol	10.1128/aem.64.2.795-799.1998	1998
Metabolism	Chemical analyses, local Shwartzman reactivity, and body weight-decreasing activity of aqueous-phenol extracts of Mycoplasma salivarium cells. Biological activities of Mycoplasma salivarium.	Totsuka M, Shibata K, Watanabe T	Antonie Van Leeuwenhoek	10.1007/BF00422720	1990
Enzymology	Purification and characterization of bacteriophage receptor on Veillonella rodentium cells. Phage-receptor on Veillonella.	Totsuka M, Ono T	Antonie Van Leeuwenhoek	10.1007/BF00418938	1989
Pathogenicity	Phage-receptor on the cell wall of Veillonella rodentium.	Totsuka M	Antonie Van Leeuwenhoek	10.1007/BF00443581	1988

References

#9047	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20737
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Veillonella rodentium (DSM 20737, ATCC 17743, NCTC 12018)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900187285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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