Name: Thermosinus carboxydivorans Nor1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17167

Type strain:

Species: Thermosinus carboxydivorans

Strain Designation: Nor1

Culture col. no.: DSM 14886, VKM B-2281

Strain history: <- T. G. Sokolova, Russian Academy of Sciences, Inst. of Microbiology, Moscow, Russia; Nor1 <- T. G. Sokolova {1996}

NCBI tax ID(s): 261685 (species)

SI-ID 134462

DSM 14886, VKM B-2281

Section

Thermosinus carboxydivorans Nor1 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from water and mud from hot spring.

Gram-negative
motile
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Selenomonadales*
	Family	*Sporomusaceae*
	Genus	*Thermosinus*
	Species	**Thermosinus carboxydivorans**
	Full Scientific Name (LPSN)	Thermosinus carboxydivorans Sokolova et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #31273]	Gram stain	negative

[Ref.: #31273]	Cell length	2.8 µm

[Ref.: #31273]	Cell width	0.5 µm

[Ref.: #31273]	Cell shape	rod-shaped

[Ref.: #31273]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5600]

Culture medium

CARBOXYDOTHERMUS MEDIUM (HETEROTROPH) (DSMZ Medium 508)

[Ref.: #5600]

Culture medium growth

[Ref.: #5600]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5600]

Culture medium composition

expand / minimize

[Ref.: #5600]

Culture medium

CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)

[Ref.: #5600]

Culture medium growth

[Ref.: #5600]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5600]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5600]	growth	60 °C
[Ref.: #31273]	growth	40-68 °C
[Ref.: #31273]	optimum	60 °C

[Ref.: #5600]	Temperature range	thermophilic
[Ref.: #31273]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31273]			optimum	6.9
[Ref.: #31273]			growth	6.5-7.7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5600]	Oxygen tolerance	anaerobe
[Ref.: #31273]	Oxygen tolerance	anaerobe

[Ref.: #31273]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31273]	arabinose ChEBI	+	carbon source
[Ref.: #31273]	fructose ChEBI	+	carbon source
[Ref.: #31273]	glucose ChEBI	+	carbon source
[Ref.: #31273]	lactose ChEBI	+	carbon source
[Ref.: #31273]	maltose ChEBI	+	carbon source
[Ref.: #31273]	mannitol ChEBI	+	carbon source
[Ref.: #31273]	pyruvate ChEBI	+	carbon source
[Ref.: #31273]	sucrose ChEBI	+	carbon source
[Ref.: #31273]	xylose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #31273]		hydrogen sulfide ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5600]	Sample type/isolated from	water and mud from hot spring
[Ref.: #5600]	Geographic location (country and/or sea, region)	Yellowstone National Park, Norris Basin
[Ref.: #5600]	Country	USA
[Ref.: #5600]	Country ISO 3 Code	USA
[Ref.: #5600]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5600]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5600]	Thermosinus carboxydivorans strain Nor1 16S ribosomal RNA gene, partial sequence	AY519200	936	ENA	401526 tax ID
[Ref.: #20218]	Thermosinus carboxydivorans partial 16S rRNA gene, type strain DSM 14886T, clone 1	FR749974	1547	ENA	261685 tax ID	*
[Ref.: #20218]	Thermosinus carboxydivorans partial 16S rRNA gene, type strain DSM 14886T, clone 2	FR749975	1548	ENA	261685 tax ID	*
[Ref.: #20218]	Thermosinus carboxydivorans partial 16S rRNA gene, type strain DSM 14886T, clone 3	FR749976	1550	ENA	261685 tax ID	*
[Ref.: #20218]	Thermosinus carboxydivorans partial 16S rRNA gene, type strain DSM 14886T, clone 4	FR749977	1548	ENA	261685 tax ID	*
[Ref.: #20218]	Thermosinus carboxydivorans partial 16S rRNA gene, type strain DSM 14886T, clone 5	FR749978	1550	ENA	261685 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermosinus carboxydivorans Nor1	GCA_000169155	contig	GenBank	401526 tax ID	*
[Ref.: #66792]	Thermosinus carboxydivorans Nor1	401526.7	wgs	PATRIC	401526 tax ID	*
[Ref.: #66792]	Thermosinus carboxydivorans Nor1	2565957142	draft	JGI IMG/M	401526 tax ID	*

[Ref.: #5600]	GC-content	51.7±1 mol%
[Ref.: #31273]	GC-content	51.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermosinus carboxydivorans Nor1 PATRIC: 401526.7
[Ref.: #69480]	gram-positive	no	97.431	yes
[Ref.: #69480]	anaerobic	yes	99.634	no
[Ref.: #69480]	halophile	no	94.366	no
[Ref.: #69480]	spore-forming	yes	71.795	no
[Ref.: #69480]	glucose-util	yes	80.392	yes
[Ref.: #69480]	aerobic	no	97.704	no
[Ref.: #69480]	motile	yes	85.198	yes
[Ref.: #69480]	flagellated	no	90.419	no
[Ref.: #69480]	thermophile	yes	99.231	yes
[Ref.: #69480]	glucose-ferment	no	71.058	no

Availability in culture collections External links

[Ref.: #5600]

Culture collection no.

DSM 14886, VKM B-2281

[Ref.: #86166]

SI-ID 134462

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Thermosinus carboxydivorans gen. nov., sp. nov., a new anaerobic, thermophilic, carbon-monoxide-oxidizing, hydrogenogenic bacterium from a hot pool of Yellowstone National Park.	Sokolova TG, Gonzalez JM, Kostrikina NA, Chernyh NA, Slepova TV, Bonch-Osmolovskaya EA, Robb FT	Int J Syst Evol Microbiol	10.1099/ijs.0.63186-0	2004	*

References

#5600

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14886

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31273

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27593 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86166

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134462.1 )

#27593

IJSEM 2353 2004 ( DOI 10.1099/ijs.0.63186-0 , PubMed 15545483 )

* These data were automatically processed and therefore are not curated

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