Selenomonas noxia (DSM 19578, ATCC 43541, JCM 8546)

Name: Selenomonas noxia (DSM 19578, ATCC 43541, JCM 8546)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17165

Type strain

Culture col. no. DSM 19578 ATCC 43541 JCM 8546 CCUG 53876 BCRC 14410 1 more

NCBI tax ID(s) 585503 135083

Special Collections DSMZ CCUG JCM

Links

Selenomonas noxia DSM 19578 is an anaerobe, mesophilic prokaryote that was isolated from human gingival crevice.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 41902

ATCC 43541,JCM 8546,CCRC 14410,BCRC 14410,CCUG 53876,DSM 19578

@ref 20215

Last LPSN update 2025-12-16 09:51:01

Domain Bacillati

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Selenomonadaceae

Genus Selenomonas

Species Selenomonas noxia

Full scientific name Selenomonas noxia Moore et al. 1987

BacDive ID	Other strains from **Selenomonas noxia** (1)	Type strain
154182	S. noxia CCUG 52675

Morphology

Colony morphology

60046

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8189	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8189	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8189	positive	growth	37	mesophilic
60046	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8189	anaerobe
60046	anaerobe
125439	anaerobe	95.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ethanol fermentation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	L-lactaldehyde degradation	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	propanol degradation	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	flavin biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	vitamin B12 metabolism	76.47	26 of 34
66794	glycolysis	76.47	13 of 17
66794	CMP-KDO biosynthesis	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	heme metabolism	71.43	10 of 14
66794	pyrimidine metabolism	71.11	32 of 45
66794	starch degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	citric acid cycle	64.29	9 of 14
66794	purine metabolism	62.77	59 of 94
66794	isoleucine metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	NAD metabolism	61.11	11 of 18
66794	hydrogen production	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	oxidative phosphorylation	56.04	51 of 91
66794	nitrate assimilation	55.56	5 of 9
66794	alanine metabolism	55.17	16 of 29
66794	vitamin B6 metabolism	54.55	6 of 11
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	leucine metabolism	53.85	7 of 13
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	50	3 of 6
66794	Entner Doudoroff pathway	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	lysine metabolism	50	21 of 42
66794	glycine metabolism	50	5 of 10
66794	cysteine metabolism	50	9 of 18
66794	adipate degradation	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	histidine metabolism	48.28	14 of 29
66794	polyamine pathway	47.83	11 of 23
66794	tryptophan metabolism	47.37	18 of 38
66794	arginine metabolism	45.83	11 of 24
66794	non-pathway related	44.74	17 of 38
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	proline metabolism	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	pentose phosphate pathway	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	ascorbate metabolism	31.82	7 of 22
66794	sulfate reduction	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	d-xylose degradation	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	arachidonic acid metabolism	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8189	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Gingiva
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
8189	human gingival crevice	USA	USA	North America
60046	Human gingival crevice,severe periodontitis
67770	Gingival crevice of an affected site in a person with rapidly progressive periodontitis

Taxonmaps

69479

Global distribution of 16S sequence LC037221 (>99% sequence identity) for Selenomonas noxia subclade from Microbeatlas

Aquatic Samples	60
Soil Samples	23
Animal Samples	2746
Plant Samples	14
Total Samples	2843

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8189	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM16055v1 assembly for Selenomonas noxia ATCC 43541	scaffold	GCA_000160555	585503.3	645951808	585503	68.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8189	Selenomonas noxia 16S ribosomal RNA gene, partial sequence	AF287799	1491		135083
67770	Selenomonas noxia gene for 16S ribosomal RNA, partial sequence, strain: JCM 8546	LC037221	1505		135083

GC content

@ref	GC-content (mol%)	Method
8189	57
67770	57	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Selenomonas noxia ATCC 43541
NCBI: GCA_000160555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	69.20	no
125439	motility	BacteriaNetⓘ	no	62.80	no
125439	gram_stain	BacteriaNetⓘ	positive	78.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	95.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Selenomonas noxia ATCC 43541
PATRIC: 585503.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	88.33	no
125438	anaerobic	anaerobicⓘ	yes	85.97	no
125438	spore-forming	spore-formingⓘ	no	71.51	no
125438	aerobic	aerobicⓘ	no	91.86	no
125438	thermophilic	thermophileⓘ	no	77.76	yes
125438	flagellated	motile2+ⓘ	yes	65.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evaluation of microbiota associated with Herpesviruses in active sites of generalized aggressive periodontitis.	Passariello C, Gigola P, Testarelli L, Puttini M, Schippa S, Petti S.	Ann Stomatol (Roma)	10.11138/ads/2017.8.2.071	2017
	Filifactor alocis--involvement in periodontal biofilms.	Schlafer S, Riep B, Griffen AL, Petrich A, Hubner J, Berning M, Friedmann A, Gobel UB, Moter A.	BMC Microbiol	10.1186/1471-2180-10-66	2010
	Subgingival Prevalence and Antibiotic Susceptibility of Selenomonas noxia.	Rams TE, Hawley CE, Whitaker EJ.	Cureus	10.7759/cureus.83171	2025
	Antimicrobial Activity of Methylene Blue Associated with Photodynamic Therapy: In Vitro Study in Multi-Species Oral Biofilm.	Bueno-Silva B, Parma-Garcia J, Frigo L, Suarez LJ, Macedo TT, Uyeda FH, Melo MARDC, Sacco R, Mourao CF, Feres M, Shibli JA, Figueiredo LC.	Pathogens	10.3390/pathogens13040342	2024
Pathogenicity	Antibacterial Activity of a Bioactive Tooth-Coating Material Containing Surface Pre-Reacted Glass in a Complex Multispecies Subgingival Biofilm.	Tanaka CJ, Rodrigues JA, Pingueiro JMS, Macedo TT, Feres M, Shibli JA, Bueno-Silva B.	Pharmaceutics	10.3390/pharmaceutics15061727	2023
	Evaluation of the Microbial Profile on the Polydioxanone Membrane and the Collagen Membrane Exposed to Multi-Species Subgingival Biofilm: An In Vitro Study.	Cintra Moreira MV, Figueiredo LC, da Cunha Melo MAR, Uyeda FH, da Silva LDA, Macedo TT, Sacco R, Mourao CF, Shibli JA, Bueno-Silva B.	Membranes (Basel)	10.3390/membranes13120907	2023
Enzymology	Development of a polymerase chain reaction assay for the rapid detection of the oral pathogenic bacterium, Selenomonas noxia.	Cruz P, Mehretu AM, Buttner MP, Trice T, Howard KM.	BMC Oral Health	10.1186/s12903-015-0071-1	2015
	Lactobacillus acidophilus impairs the establishment of pathogens in a subgingival multispecies biofilm.	Bueno MR, Dudu-Silva G, Macedo TT, Gomes APAP, Rodrigues Oliveira Braga A, Aguiar Silva LD, Bueno-Silva B.	Front Dent Med	10.3389/fdmed.2023.1212773	2023
	Propolis, Aloe Vera, Green Tea, Cranberry, Calendula, Myrrha and Salvia Properties against Periodontal Microorganisms.	Figueiredo LC, Freitas Figueiredo N, da Cruz DF, Baccelli GT, Sarachini GE, Bueno MR, Feres M, Bueno-Silva B.	Microorganisms	10.3390/microorganisms10112172	2022
Transcriptome	Gene expression of bacterial collagenolytic proteases in root caries.	Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T.	J Oral Microbiol	10.1080/20002297.2018.1424475	2018
	Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination.	Pal A, Saha BK, Saha J.	PLoS One	10.1371/journal.pone.0219231	2019
	Brazilian Red Propolis Is as Effective as Amoxicillin in Controlling Red-Complex of Multispecies Subgingival Mature Biofilm In Vitro.	de Figueiredo KA, da Silva HDP, Miranda SLF, Goncalves FJDS, de Sousa AP, de Figueiredo LC, Feres M, Bueno-Silva B.	Antibiotics (Basel)	10.3390/antibiotics9080432	2020
	Metabolic activity of hydro-carbon-oxo-borate on a multispecies subgingival periodontal biofilm: a short communication.	Shibli JA, Rocha TF, Coelho F, de Oliveira Capote TS, Saska S, Melo MA, Pingueiro JMS, de Faveri M, Bueno-Silva B.	Clin Oral Investig	10.1007/s00784-021-03900-0	2021
	Associations between Periodontal Microbiota and Death Rates.	Chiu CJ, Chang ML, Taylor A.	Sci Rep	10.1038/srep35428	2016
	CMG-biotools, a free workbench for basic comparative microbial genomics.	Vesth T, Lagesen K, Acar O, Ussery D.	PLoS One	10.1371/journal.pone.0060120	2013
	Is obesity an oral bacterial disease?	Goodson JM, Groppo D, Halem S, Carpino E.	J Dent Res	10.1177/0022034509338353	2009
	Veillonella, Firmicutes: Microbes disguised as Gram negatives.	Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW.	Stand Genomic Sci	10.4056/sigs.2981345	2013
	In silico characterization of pectate lyase protein sequences from different source organisms.	Dubey AK, Yadav S, Kumar M, Singh VK, Sarangi BK, Yadav D.	Enzyme Res	10.4061/2010/950230	2010
	Subgingival microbiota in adult Down syndrome periodontitis.	Khocht A, Yaskell T, Janal M, Turner BF, Rams TE, Haffajee AD, Socransky SS.	J Periodontal Res	10.1111/j.1600-0765.2011.01459.x	2012
	Modulation of Neutrophil Extracellular Trap and Reactive Oxygen Species Release by Periodontal Bacteria.	Hirschfeld J, White PC, Milward MR, Cooper PR, Chapple ILC.	Infect Immun	10.1128/iai.00297-17	2017
	Effects of azithromycin, metronidazole, amoxicillin, and metronidazole plus amoxicillin on an in vitro polymicrobial subgingival biofilm model.	Soares GM, Teles F, Starr JR, Feres M, Patel M, Martin L, Teles R.	Antimicrob Agents Chemother	10.1128/aac.04974-14	2015
	The vaginal microflora in relation to gingivitis.	Persson R, Hitti J, Verhelst R, Vaneechoutte M, Persson R, Hirschi R, Weibel M, Rothen M, Temmerman M, Paul K, Eschenbach D.	BMC Infect Dis	10.1186/1471-2334-9-6	2009
Genetics	Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis.	Ravcheev DA, Thiele I.	Front Microbiol	10.3389/fmicb.2016.00128	2016
Enzymology	Use of synthetic oligonucleotide DNA probes for identification and direct detection of Bacteroides forsythus in plaque samples.	Moncla BJ, Motley ST, Braham P, Ewing L, Adams TH, Vermeulen NM.	J Clin Microbiol	10.1128/jcm.29.10.2158-2162.1991	1991
	Antibacterial activity of a bioactive composite resins containing surface pre-reacted glass in a complex multispecies subgingival biofilm.	de Lima GC, de Cassia Orlando Sardi J, de Figueiredo LC, Bueno-Silva B, Fonseca MA, Dudu-Silva G, de Carvalho FPP, Rodrigues JA.	Odontology	10.1007/s10266-025-01153-x	2025
	The metagenome and metabolome signatures of dental biofilms associated with severe dental fluorosis.	Ajrithirong P, Krasaesin A, Sriarj W, Gavila P, Chetruengchai W, Sriwattanapong K, Manaspon C, Samaranayake L, Porntaveetus T.	J Oral Microbiol	10.1080/20002297.2025.2560591	2025
	Screening for Selenomonas noxia in a Pediatric and Adolescent Patient Population Reveals Differential Oral Prevalence across Age Groups.	Hendricks K, Hatch T, Kingsley K, Howard KM.	Int J Environ Res Public Health	10.3390/ijerph21040391	2024
	Oral Prevalence of Selenomonas noxia Differs among Orthodontic Patients Compared to Non-Orthodontic Controls: A Retrospective Biorepository Analysis.	Hodges K, Famuliner P, Kingsley K, Howard KM.	Pathogens	10.3390/pathogens13080670	2024
	Higher Prevalence of the Periodontal Pathogen Selenomonas noxia among Pediatric and Adult Patients May Be Associated with Overweight and Obesity.	Williams A, Porter J, Kingsley K, Howard KM.	Pathogens	10.3390/pathogens13040338	2024
	Bacterial Flora in Screw-Fixed Superstructures with Different Sealing Materials: A Comparative Clinical Trial.	Yamaguchi K, Munakata M, Ishii K, Uesugi T.	Bioengineering (Basel)	10.3390/bioengineering11020195	2024
Metabolism	Advances in the study of oral microbiota and metabolism associated fatty liver disease: a systematic review.	Huang M, Zhang X, Zhou R, Song Y, Zhang J, Wu J.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1491696	2024
	Administration of Clinical COVID-19 Mouthwashing Protocol and Potential Modulation of Pediatric Oral Bacterial Prevalence of Selenomonas noxia: A Pilot Study.	Sodhi P, Jiang Y, Lin S, Downey J, Sorenson C, Shayegh M, Sullivan V, Kingsley K, Howard KM.	Pediatr Rep	10.3390/pediatric15030038	2023
	Nature and Prevalence of Bacterial Taxa Persisting after Root Canal Chemomechanical Preparation in Permanent Teeth: A Systematic Review and Meta-analysis.	Nardello LCL, Pinheiro ET, Gavini G, Prado LC, Romero RX, Gomes BPFA, Skelton-Macedo MC.	J Endod	10.1016/j.joen.2022.01.016	2022
	Association between clusters of antibodies against periodontal microorganisms and Alzheimer disease mortality: Evidence from a nationally representative survey in the USA.	Merchant AT, Zhao L, Bawa EM, Yi F, Vidanapathirana NP, Lohman M, Zhang J.	J Periodontol	10.1002/jper.23-0006	2024
	The impact of vaping behavior on functional changes within the subgingival microbiome.	Yang I, He X, Jeon J, Claussen H, Arthur R, Cushenan P, Weaver SR, Luo R, Black M, Shannahan J, Wright C.	Sci Rep	10.1038/s41598-025-17121-y	2025
	Oral Prevalence of Akkermansia muciniphila Differs among Pediatric and Adult Orthodontic and Non-Orthodontic Patients.	Shen C, Clawson JB, Simpson J, Kingsley K.	Microorganisms	10.3390/microorganisms11010112	2023
	Examining the relationship between oral health indicators, obesity, and Xerostomia in older adults.	Rezvaninejad R, Zeinali M, Fatemi A, Hashemipour MA.	BMC Public Health	10.1186/s12889-025-23892-w	2025
Metabolism	The relationship between oral-origin bacteria in the fecal microbiome and albumin-bilirubin grade in patients with hepatitis C.	Yamamoto K, Honda T, Ito T, Ishizu Y, Kuzuya T, Nakamura M, Miyahara R, Kawashima H, Ishigami M, Fujishiro M.	J Gastroenterol Hepatol	10.1111/jgh.15206	2021
Phylogeny	Metabarcoding analysis of oral microbiome during pregnancy.	Benslimane FM, Mohammed LI, Abu-Hijleh H, Suleiman S, Boughattas S, Zakaria ZZ, Fthenou E, Al-Asmakh M.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1477703	2024
	Association between weight-adjusted waist index and severe periodontitis using NHANES 2009-2014.	He G, Zhang J, Liu X, Qiu Z, Yan M, Zhang M, Wu D, Liu L, Ding C, Chen X.	Sci Rep	10.1038/s41598-025-14664-y	2025
	Combination of Neovestitol and Vestitol Modifies the Profile of Periodontitis-Related Subgingival Multispecies Biofilm	Macedo T, Malavazi L, Vargas G, Goncalves F, Gomes A, Bueno M, Aguiar da Silva L, Figueiredo L, Bueno-Silva B.	Biomedicines		2024
Phylogeny	Alterations of salivary microbial community associated with oropharyngeal and hypopharyngeal squamous cell carcinoma patients.	Panda M, Rai AK, Rahman T, Das A, Das R, Sarma A, Kataki AC, Chattopadhyay I.	Arch Microbiol	10.1007/s00203-019-01790-1	2020
Enzymology	Microbial Screening Reveals Oral Site-Specific Locations of the Periodontal Pathogen Selenomonas noxia.	McDaniel J, McDaniel S, Samiano BJ, Marrujo M, Kingsley K, Howard KM.	Curr Issues Mol Biol	10.3390/cimb43010029	2021
	The impact of Limosilactobacillus reuteri in combination with non-surgical periodontal therapy on periodontal clinical parameters and salivary and subgingival microbiota composition in individuals with stage III-IV periodontitis: a randomized controlled trial.	Huo P, Deng L, Lu J, Kan P, Jing R, Luo LJ.	BMC Oral Health	10.1186/s12903-025-06084-1	2025
	Platelet-rich fibrin obtained from different protocols affects the formation of the in vitro multispecies subgingival biofilm associated with periodontitis.	Hideaki Uyeda F, Quilles Vargas G, Matias Malavazi L, Tiemi Macedo T, Paim de Abreu Paulo Gomes A, Rocha Bueno M, Henrique Moreira Paulo Tolentino P, Aguiar da Silva LD, Cristina Figueiredo L, Shibli JA, Bueno-Silva B.	J Oral Microbiol	10.1080/20002297.2024.2445598	2025
	Oral Microbiome in Orthodontic Acrylic Retainer.	Kasibut P, Kuvatanasuchati J, Thaweboon B, Sirisoontorn I.	Polymers (Basel)	10.3390/polym14173583	2022
	Diversity in the composition of pleural cavity and oral cavity microbiota in different bacterial empyema.	Huang Y, Gao QH, Liu CJ, Su T, Liu J, Liang ZY, Zhao ZJ, Chen LP, Yi YN, Li XR, He J.	Front Microbiol	10.3389/fmicb.2025.1566606	2025
	Antibodies against Periodontal Microorganisms and Cognition in Older Adults.	Merchant AT, Yi F, Vidanapathirana NP, Lohman M, Zhang J, Newman-Norlund RD, Fridriksson J.	JDR Clin Trans Res	10.1177/23800844211072784	2023
Pathogenicity	Association of Dental Infections with Intracranial Atherosclerotic Stenosis.	Sen S, Meyer J, Mascari R, Trivedi T, Suri F, Wasserman B, Rosamond W, Moss K, Beck J, Gottesman RF.	Cerebrovasc Dis	10.1159/000530829	2024
	Mouth-Heart Connection: A Systematic Review on the Impact of Periodontal Disease on Cardiovascular Health.	Etta I, Kambham S, Girigosavi KB, Panjiyar BK.	Cureus	10.7759/cureus.46585	2023
	Activation of cellular responses by cyclic dinucleotides and porphyromonas gingivalis lipopolysaccharide: a proteomic study on gingival fibroblasts.	Elmanfi S, Onyedibe KI, Aryal UK, Kononen E, Sintim HO, Gursoy UK.	J Oral Microbiol	10.1080/20002297.2024.2431453	2025
	Peri-Implant Inflammation in Waterpipe Users and Cigarette Smokers: An Observational Study.	Ali D, Al-Yahya QM, Baskaradoss JK.	Int Dent J	10.1016/j.identj.2023.03.005	2023
Metabolism	Role of Nonalcoholic Fatty Liver Disease in Periodontitis: A Bidirectional Relationship.	Vegda HS, Patel B, Girdhar GA, Pathan MSH, Ahmad R, Haque M, Sinha S, Kumar S.	Cureus	10.7759/cureus.63775	2024
Phylogeny	Supragingival Plaque Microbial Community Analysis of Children with Halitosis.	Ren W, Zhang Q, Liu X, Zheng S, Ma L, Chen F, Xu T, Xu B.	J Microbiol Biotechnol	10.4014/jmb.1605.05012	2016
	Inter-kingdom interactions and environmental influences on the oral microbiome in severe early childhood caries.	Weng L, Cui Y, Jian W, Zhang Y, Pang L, Cao Y, Zhou Y, Liu W, Lin H, Tao Y.	Microbiol Spectr	10.1128/spectrum.02518-24	2025
Genetics	Metagenomic analysis of healthy and diseased peri-implant microbiome under different periodontal conditions: a cross-sectional study.	Song L, Feng Z, Zhou Q, Wu X, Zhang L, Sun Y, Li R, Chen H, Yang F, Yu Y.	BMC Oral Health	10.1186/s12903-023-03442-9	2024
	Circulating Bacterial DNA as Plasma Biomarkers for Lung Cancer Early Detection.	Zhou H, Liao J, Leng Q, Chinthalapally M, Dhilipkannah P, Jiang F.	Microorganisms	10.3390/microorganisms11030582	2023
	Characterization of the oral and gut microbiome in children with obesity aged 3 to 5 years.	Ma T, Wu Z, Lin J, Shan C, Abasijiang A, Zhao J.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1102650	2023
Pathogenicity	Furcation Therapy With Enamel Matrix Derivative: Effects on the Subgingival Microbiome.	Queiroz LA, Casarin RCV, Dabdoub SM, Tatakis DN, Sallum EA, Kumar PS.	J Periodontol	10.1902/jop.2017.160542	2017
	The Relationship between the Oral Microbiota and Metabolic Syndrome.	Prince Y, Davison GM, Davids SFG, Erasmus RT, Kengne AP, Graham LM, Raghubeer S, Matsha TE.	Biomedicines	10.3390/biomedicines11010003	2022
	Epithelial-derived interleukin-23 promotes oral mucosal immunopathology.	Kim TS, Ikeuchi T, Theofilou VI, Williams DW, Greenwell-Wild T, June A, Adade EE, Li L, Abusleme L, Dutzan N, Yuan Y, Brenchley L, Bouladoux N, Sakamachi Y, NIDCD/NIDCR Genomics and Computational Biology Core, Palmer RJ, Iglesias-Bartolome R, Trinchieri G, Garantziotis S, Belkaid Y, Valm AM, Diaz PI, Holland SM, Moutsopoulos NM.	Immunity	10.1016/j.immuni.2024.02.020	2024
	The Prevalence of Periodontitis and Assessment of Oral Micro-Biota in Patients with Hidradenitis Suppurativa: A Descriptive Cross-Sectional Study.	Jastrzab B, Pasnik-Chwalik B, Konopka T, Krajewski PK, Szepietowski JC, Matusiak L.	J Clin Med	10.3390/jcm11237065	2022
	The impact of caries status on supragingival plaque and salivary microbiome in children with mixed dentition: a cross-sectional survey.	Yang X, He L, Yan S, Chen X, Que G.	BMC Oral Health	10.1186/s12903-021-01683-0	2021
	The Oral Microbiome and Its Role in Systemic Autoimmune Diseases: A Systematic Review of Big Data Analysis.	Gao L, Cheng Z, Zhu F, Bi C, Shi Q, Chen X.	Front Big Data	10.3389/fdata.2022.927520	2022
	Colonization dynamics of subgingival microbiota in recently installed dental implants compared to healthy teeth in the same individual: a 6-month prospective observational study.	Silva-Boghossian CM, Duarte PT, Silva DGD, Lourenco TGB, Colombo APV.	J Appl Oral Sci	10.1590/1678-7757-2023-0134	2023
	Prevalence of Oral Pathogen Slackia exigua among Clinical Orthodontic and Non-Orthodontic Saliva Samples.	Shen C, Simpson J, Clawson JB, Lam S, Kingsley K.	Microorganisms	10.3390/microorganisms11040867	2023
	Arthritis-induced alveolar bone loss is associated with changes in the composition of oral microbiota.	Correa JD, Saraiva AM, Queiroz-Junior CM, Madeira MF, Duarte PM, Teixeira MM, Souza DG, da Silva TA.	Anaerobe	10.1016/j.anaerobe.2016.03.006	2016
Genetics	Comparison of the oral microbial composition between healthy individuals and periodontitis patients in different oral sampling sites using 16S metagenome profiling.	Kim YT, Jeong J, Mun S, Yun K, Han K, Jeong SN.	J Periodontal Implant Sci	10.5051/jpis.2200680034	2022
	Immune status, and not HIV infection or exposure, drives the development of the oral microbiota.	Coker MO, Mongodin EF, El-Kamary SS, Akhigbe P, Obuekwe O, Omoigberale A, Langenberg P, Enwonwu C, Hittle L, Blattner WA, Charurat M.	Sci Rep	10.1038/s41598-020-67487-4	2020
	The impact of fixed orthodontic appliances on oral microbiome dynamics in Japanese patients.	Kado I, Hisatsune J, Tsuruda K, Tanimoto K, Sugai M.	Sci Rep	10.1038/s41598-020-78971-2	2020
	Association between Obesity and Periodontitis in US Adults: NHANES 2011-2014.	Liu L, Xia LY, Gao YJ, Dong XH, Gong RG, Xu J.	Obes Facts	10.1159/000534751	2024
	Processing and storage methods affect oral and gut microbiome composition.	Superdock DK, Zhang W, Poole AC.	Front Microbiol	10.3389/fmicb.2023.1253570	2023
Phylogeny	The effects of removing dead bacteria by propidium monoazide on the profile of salivary microbiome.	Ren Q, Wei F, Yuan C, Zhu C, Zhang Q, Quan J, Sun X, Zheng S.	BMC Oral Health	10.1186/s12903-021-01832-5	2021
Phenotype	Upper respiratory tract microbiota is associated with small airway function and asthma severity.	Li Y, Zou C, Li J, Wang W, Guo Y, Zhao L, Jiang C, Zhao P, An X.	BMC Microbiol	10.1186/s12866-023-02757-5	2023
	Antibodies to oral pathobionts and colon cancer risk in the CLUE I cohort study.	Debertin J, Teles F, Martin LM, Lu J, Koestler DC, Kelsey KT, Beck JD, Platz EA, Michaud DS.	Int J Cancer	10.1002/ijc.34527	2023
Phylogeny	Dysbiosis of the Subgingival Microbiome and Relation to Periodontal Disease in Association with Obesity and Overweight.	Rahman B, Al-Marzooq F, Saad H, Benzina D, Al Kawas S.	Nutrients	10.3390/nu15040826	2023
Enzymology	The palatine tonsil bacteriome, but not the mycobiome, is altered in HIV infection.	Fukui Y, Aoki K, Ishii Y, Tateda K.	BMC Microbiol	10.1186/s12866-018-1274-9	2018
	Antibiofilm and Immune-Modulatory Activity of Cannabidiol and Cannabigerol in Oral Environments-In Vitro Study.	Garzon HS, Loaiza-Oliva M, Martinez-Pabon MC, Puerta-Suarez J, Tellez Corral MA, Bueno-Silva B, Suarez DR, Diaz-Baez D, Suarez LJ.	Antibiotics (Basel)	10.3390/antibiotics13040342	2024
	New Insights into the Microbial Profiles of Infected Root Canals in Traumatized Teeth.	Manoharan L, Brundin M, Rakhimova O, Chavez de Paz L, Romani Vestman N.	J Clin Med	10.3390/jcm9123877	2020
	Oral bacteria in infective endocarditis requiring surgery: a retrospective analysis of 134 patients.	Deppe H, Reitberger J, Behr AV, Vitanova K, Lange R, Wantia N, Wagenpfeil S, Sculean A, Ritschl LM.	Clin Oral Investig	10.1007/s00784-022-04465-2	2022
	Therapeutic Strategies and Genetic Implications for Periodontal Disease Management: A Systematic Review	Laforgia A, Inchingolo A, Piras F, Colonna V, Giorgio R, Carone C, Rapone B, Malcangi G, Inchingolo A, Inchingolo F, Palermo A, Dipalma G.	Int J Mol Sci		2024
Phylogeny	Characterization of microbial communities from gut microbiota of hypercholesterolemic and control subjects.	Morales C, Rojas G, Rebolledo C, Rojas-Herrera M, Arias-Carrasco R, Cuadros-Orellana S, Maracaja-Coutinho V, Saavedra K, Leal P, Lanas F, Salazar LA, Saavedra N.	Front Cell Infect Microbiol	10.3389/fcimb.2022.943609	2022
	Poor Oral Hygiene and High Levels of Inflammatory Cytokines in Saliva Predict the Risk of Overweight and Obesity.	Nijakowski K, Lehmann A, Rutkowski R, Korybalska K, Witowski J, Surdacka A.	Int J Environ Res Public Health	10.3390/ijerph17176310	2020
	Circulating IgG antibodies to periodontal bacteria and lung cancer risk in the CLUE cohorts.	Ampomah NK, Teles F, Martin LM, Lu J, Koestler DC, Kelsey KT, Beck JD, Platz EA, Michaud DS.	JNCI Cancer Spectr	10.1093/jncics/pkad029	2023
	Gingival fluid cytokine expression and subgingival bacterial counts during pregnancy and postpartum: a case series.	Bieri RA, Adriaens L, Sporri S, Lang NP, Persson GR.	Clin Oral Investig	10.1007/s00784-012-0674-8	2013
Phylogeny	The subgingival microbiota of Papillon-Lefèvre syndrome.	Albandar JM, Khattab R, Monem F, Barbuto SM, Paster BJ.	J Periodontol	10.1902/jop.2011.110450	2012
	The composition of microbial communities in inflammatory periodontal diseases in young adults Tatars.	Kharitonova M, Vankov P, Abdrakhmanov A, Mamaeva E, Yakovleva G, Ilinskaya O.	AIMS Microbiol	10.3934/microbiol.2021005	2021
Genetics	Understanding the bacterial compositional network associations between oral and gut microbiome within healthy Koreans.	Jeong J, Ahn K, Mun S, Yun K, Kim YT, Jung W, Lee KE, Kim MY, Ahn Y, Han K.	J Oral Microbiol	10.1080/20002297.2023.2186591	2023
	Oral microbial dysbiosis linked to worsened periodontal condition in rheumatoid arthritis patients.	Correa JD, Fernandes GR, Calderaro DC, Mendonca SMS, Silva JM, Albiero ML, Cunha FQ, Xiao E, Ferreira GA, Teixeira AL, Mukherjee C, Leys EJ, Silva TA, Graves DT.	Sci Rep	10.1038/s41598-019-44674-6	2019
Metabolism	Subgingival Microbiome and Specialized Pro-Resolving Lipid Mediator Pathway Profiles Are Correlated in Periodontal Inflammation.	Lee CT, Li R, Zhu L, Tribble GD, Zheng WJ, Ferguson B, Maddipati KR, Angelov N, Van Dyke TE.	Front Immunol	10.3389/fimmu.2021.691216	2021
Phylogeny	Clustering of subgingival microbial species in adolescents with periodontitis.	Lopez R, Dahlen G, Retamales C, Baelum V.	Eur J Oral Sci	10.1111/j.1600-0722.2011.00808.x	2011
Genetics	Oral Microbiome in Nonsmoker Patients with Oral Cavity Squamous Cell Carcinoma, Defined by Metagenomic Shotgun Sequencing.	Ganly I, Hao Y, Rosenthal M, Wang H, Migliacci J, Huang B, Katabi N, Brown S, Tang YW, Pei Z, Yang L.	Cancers (Basel)	10.3390/cancers14246096	2022
	Methotrexate promotes recovery of arthritis-induced alveolar bone loss and modifies the composition of the oral-gut microbiota.	de Arruda JAA, Correa JD, Singh Y, Oliveira SR, Machado CC, Schneider AH, Medeiros JD, Fernandes GR, Macari S, Barrioni BR, Santos MS, Duffles LF, Nakaya HTI, Fukada SY, Graves DT, Cunha FQ, Silva TA.	Anaerobe	10.1016/j.anaerobe.2022.102577	2022
	Antimicrobial Chemotherapy for Recalcitrant Severe Human Periodontitis.	Rams TE, Slots J.	Antibiotics (Basel)	10.3390/antibiotics12020265	2023
	Infection burden, periodontal pathogens, and their interactive association with incident all-cause and Alzheimer's disease dementia in a large national survey.	Beydoun MA, Beydoun HA, Hedges DW, Erickson LD, Gale SD, Weiss J, El-Hajj ZW, Evans MK, Zonderman AB.	Alzheimers Dement	10.1002/alz.14141	2024
Phylogeny	Oral Microbiome Traits of Type 1 Diabetes and Phenylketonuria Patients in Latvia.	Abola I, Gudra D, Ustinova M, Fridmanis D, Emulina DE, Skadins I, Brinkmane A, Lauga-Tunina U, Gailite L, Auzenbaha M.	Microorganisms	10.3390/microorganisms11061471	2023
	Improved High-Throughput Sequencing of the Human Oral Microbiome: From Illumina to PacBio.	Zhang J, Su L, Wang Y, Deng S.	Can J Infect Dis Med Microbiol	10.1155/2020/6678872	2020
	Proteomic analysis of sialoliths from calcified, lipid and mixed groups as a source of potential biomarkers of deposit formation in the salivary glands.	Musial N, Bogucka A, Tretiakow D, Skorek A, Ryl J, Czaplewska P.	Clin Proteomics	10.1186/s12014-023-09402-3	2023
Metabolism	Cyclic Dinucleotides in Oral Bacteria and in Oral Biofilms.	Gursoy UK, Gursoy M, Kononen E, Sintim HO.	Front Cell Infect Microbiol	10.3389/fcimb.2017.00273	2017
Phylogeny	Effects of ultrasonic, electric, and manual toothbrushes on subgingival plaque composition in orthodontically banded molars.	Costa MR, da Silva VC, Miqui MN, Colombo AP, Cirelli JA.	Am J Orthod Dentofacial Orthop	10.1016/j.ajodo.2008.03.032	2010
	Narrative review of application of metagenomic approaches to study the link between oropharyngeal microbiome and infectious diseases.	Diallo K, Missa KF, Tuo JK, Amoikon TLS, Bla BK, Bonfoh B.	Front Microbiol	10.3389/fmicb.2023.1292526	2023
Genetics	Defining the gut microbiota in individuals with periodontal diseases: an exploratory study.	Lourenso TGB, Spencer SJ, Alm EJ, Colombo APV.	J Oral Microbiol	10.1080/20002297.2018.1487741	2018
	Haemophilus pittmaniae and Leptotrichia spp. Constitute a Multi-Marker Signature in a Cohort of Human Papillomavirus-Positive Head and Neck Cancer Patients.	Mougeot JC, Beckman MF, Langdon HC, Lalla RV, Brennan MT, Bahrani Mougeot FK.	Front Microbiol	10.3389/fmicb.2021.794546	2021
	Molecular subgroup of periodontitis revealed by integrated analysis of the microbiome and metabolome in a cross-sectional observational study.	Na HS, Kim S, Kim S, Yu Y, Kim SY, Kim HJ, Lee JY, Lee JH, Chung J.	J Oral Microbiol	10.1080/20002297.2021.1902707	2021
	Periodontal Status and Subgingival Biofilms in Cystic Fibrosis Adults.	Pawlaczyk-Kamienska T, Sniatala R, Batura-Gabryel H, Borysewicz-Lewicka M, Cofta S.	Pol J Microbiol	10.33073/pjm-2019-040	2019
Phylogeny	Does pregnancy have an impact on the subgingival microbiota?	Adriaens LM, Alessandri R, Sporri S, Lang NP, Persson GR.	J Periodontol	10.1902/jop.2009.080012	2009
	Diversity of site-specific microbes of occlusal and proximal lesions in severe- early childhood caries (S-ECC).	Fakhruddin KS, Samaranayake LP, Hamoudi RA, Ngo HC, Egusa H.	J Oral Microbiol	10.1080/20002297.2022.2037832	2022
	Periodontal and Peri-Implant Microbiome Dysbiosis Is Associated With Alterations in the Microbial Community Structure and Local Stability.	Zhang Y, Li Y, Yang Y, Wang Y, Cao X, Jin Y, Xu Y, Li SC, Zhou Q.	Front Microbiol	10.3389/fmicb.2021.785191	2021
	16S rRNA Long-Read Sequencing of the Granulation Tissue from Nonsmokers and Smokers-Severe Chronic Periodontitis Patients.	Chowdhry R, Singh N, Sahu DK, Tripathi RK, Mishra A, Singh A, Shyam H, Shankar P, Lal N, Bhatt MLB, Kant R.	Biomed Res Int	10.1155/2018/4832912	2018
	Oral Microbiota Features in Subjects with Down Syndrome and Periodontal Diseases: A Systematic Review.	Contaldo M, Lucchese A, Romano A, Della Vella F, Di Stasio D, Serpico R, Serpico R, Petruzzi M.	Int J Mol Sci	10.3390/ijms22179251	2021
Enzymology	Subgingival Microbiota of Mexicans with Type 2 Diabetes with Different Periodontal and Metabolic Conditions.	Rodriguez-Hernandez AP, Marquez-Corona ML, Pontigo-Loyola AP, Medina-Solis CE, Ximenez-Fyvie LA.	Int J Environ Res Public Health	10.3390/ijerph16173184	2019
Phylogeny	Dysbiosis and Variation in Predicted Functions of the Granulation Tissue Microbiome in HPV Positive and Negative Severe Chronic Periodontitis.	Chowdhry R, Singh N, Sahu DK, Tripathi RK, Mishra A, Singh A, Mukerjee I, Lal N, Bhatt MLB, Kant R.	Biomed Res Int	10.1155/2019/8163591	2019
Phylogeny	Anaerobic culture to detect periodontal and caries pathogens.	Tanner AC.	J Oral Biosci	10.1016/j.job.2014.08.001	2015
	Microbiome of Saliva and Plaque in Children According to Age and Dental Caries Experience.	Lee E, Park S, Um S, Kim S, Lee J, Jang J, Jeong HO, Shin J, Kang J, Lee S, Jeong T.	Diagnostics (Basel)	10.3390/diagnostics11081324	2021
	Clinical and microbiological profiles of human immunodeficiency virus (HIV)-seropositive Brazilians undergoing highly active antiretroviral therapy and HIV-seronegative Brazilians with chronic periodontitis.	Goncalves LS, Soares Ferreira SM, Souza CO, Souto R, Colombo AP.	J Periodontol	10.1902/jop.2007.060040	2007
Pathogenicity	Microbiome Dysbiosis: A Pathological Mechanism at the Intersection of Obesity and Glaucoma.	Pezzino S, Sofia M, Greco LP, Litrico G, Filippello G, Sarva I, La Greca G, Latteri S.	Int J Mol Sci	10.3390/ijms24021166	2023
	Prevalence of Periodontal Disease among Obese Young Adult Population in Saudi Arabia-A Cross-Sectional Study.	Thomas JT, Thomas T, Ahmed M, Kannan S K, Abdullah Z, Alghamdi SA, Joseph B.	Medicina (Kaunas)	10.3390/medicina56040197	2020
	A new checkerboard panel for testing bacterial markers in periodontal disease.	Dahlen G, Leonhardt A.	Oral Microbiol Immunol	10.1111/j.1399-302x.2005.00243.x	2006
	Bacterial Composition and Metabolomics of Dental Plaque From Adolescents.	Havsed K, Stensson M, Jansson H, Carda-Dieguez M, Pedersen A, Neilands J, Svensater G, Mira A.	Front Cell Infect Microbiol	10.3389/fcimb.2021.716493	2021
	Effect of denture cleaning on abrasion resistance and surface topography of polymerized CAD CAM acrylic resin denture base.	Shinawi LA.	Electron Physician	10.19082/4281	2017
	Oral Microbiota Profile in Patients with Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis.	Esberg A, Johansson L, Berglin E, Mohammad AJ, Jonsson AP, Dahlqvist J, Stegmayr B, Johansson I, Rantapaa-Dahlqvist S.	Microorganisms	10.3390/microorganisms10081572	2022
	Detection and comparison of Selenomonas sputigena in subgingival biofilms in chronic and aggressive periodontitis patients.	Nagpal D, Prakash S, Bhat KG, Singh G.	J Indian Soc Periodontol	10.4103/0972-124x.181247	2016
Enzymology	Tobacco smoking and periodontal microflora in a Saudi Arabian population.	Natto S, Baljoon M, Dahlen G, Bergstrom J.	J Clin Periodontol	10.1111/j.1600-051x.2005.00710.x	2005
Pathogenicity	Regulation of gingival epithelial cytokine response by bacterial cyclic dinucleotides.	Elmanfi S, Zhou J, Sintim HO, Kononen E, Gursoy M, Gursoy UK.	J Oral Microbiol	10.1080/20002297.2018.1538927	2019
	Subgingival microbiota dysbiosis in systemic lupus erythematosus: association with periodontal status.	Correa JD, Calderaro DC, Ferreira GA, Mendonca SM, Fernandes GR, Xiao E, Teixeira AL, Leys EJ, Graves DT, Silva TA.	Microbiome	10.1186/s40168-017-0252-z	2017
	Association between the nasopharyngeal microbiome and metabolome in patients with COVID-19.	Liu J, Liu S, Zhang Z, Lee X, Wu W, Huang Z, Lei Z, Xu W, Chen D, Wu X, Guo Y, Peng L, Lin B, Chong Y, Mou X, Shi M, Lan P, Chen T, Zhao W, Gao Z.	Synth Syst Biotechnol	10.1016/j.synbio.2021.06.002	2021
	Periodontitis is associated with significant hepatic fibrosis in patients with non-alcoholic fatty liver disease.	Alazawi W, Bernabe E, Tai D, Janicki T, Kemos P, Samsuddin S, Syn WK, Gillam D, Turner W.	PLoS One	10.1371/journal.pone.0185902	2017
	Periodontal Antibodies and All-Cause and Cardiovascular Disease Mortality.	Qi J, Zihang Z, Zhang J, Park YM, Shrestha D, Jianling B, Merchant AT.	J Dent Res	10.1177/0022034519884012	2020
	Comparative analysis of subgingival red complex bacteria in obese and normal weight subjects with and without chronic periodontitis.	Suresh S, Mahendra J, Kumar ARP, Singh G, Jayaraman S, Paul R.	J Indian Soc Periodontol	10.4103/jisp.jisp_241_17	2017
Metabolism	A Co-Association of Streptococcus mutans and Veillonella parvula/dispar in Root Caries Patients and In Vitro Biofilms.	Abram AM, Szewczyk MM, Park SG, Sam SS, Eldana HB, Koria FJ, Ferracciolo JM, Young LA, Qadir H, Bonham AJ, Yang F, Zora JS, Abdulelah SA, Patel NA, Koleilat A, Saleh MA, Alhabeil JA, Khan S, Tripathi A, Palanci JG, Krukonis ES.	Infect Immun	10.1128/iai.00355-22	2022
	Did the Brain and Oral Microbiota Talk to Each Other? A Review of the Literature.	Maitre Y, Micheneau P, Delpierre A, Mahalli R, Guerin M, Amador G, Denis F.	J Clin Med	10.3390/jcm9123876	2020
	Corynebacterium matruchotii Demography and Adhesion Determinants in the Oral Cavity of Healthy Individuals.	Esberg A, Barone A, Eriksson L, Lif Holgerson P, Teneberg S, Johansson I.	Microorganisms	10.3390/microorganisms8111780	2020
	Serum IgG Antibodies against Periodontal Microbes and Cancer Mortality.	Zhong Z, Jin Q, Zhang J, Park YM, Shrestha D, Bai J, Merchant AT.	JDR Clin Trans Res	10.1177/2380084419859484	2020
	Oral microbiota in human health and disease: A perspective.	Santacroce L, Passarelli PC, Azzolino D, Bottalico L, Charitos IA, Cazzolla AP, Colella M, Topi S, Godoy FG, D'Addona A.	Exp Biol Med (Maywood)	10.1177/15353702231187645	2023
	Periodontal infections and pre-term low birth weight: a case-control study.	Buduneli N, Baylas H, Buduneli E, Turkoglu O, Kose T, Dahlen G.	J Clin Periodontol	10.1111/j.1600-051x.2005.00670.x	2005
	Pre and Probiotics Involved in the Modulation of Oral Bacterial Species: New Therapeutic Leads in Mental Disorders?	Maitre Y, Mahalli R, Micheneau P, Delpierre A, Guerin M, Amador G, Denis F.	Microorganisms	10.3390/microorganisms9071450	2021
Metabolism	Relationship between periodontal pocket sulfide levels and subgingival species.	Torresyap G, Haffajee AD, Uzel NG, Socransky SS.	J Clin Periodontol	10.1034/j.1600-051x.2003.00377.x	2003
	Adjunctive dental therapies in caries-active children: Shifting the cariogenic salivary microbiome from dysbiosis towards non-cariogenic health.	Lyashenko C, Herrman E, Irwin J, James A, Strauss S, Warner J, Khor B, Snow M, Ortiz S, Waid E, Nasry B, Chai J, Choong C, Palmer E, Kutsch K, Forsyth A, Choi D, Maier T, Machida CA.	Hum Microb J	10.1016/j.humic.2020.100077	2020
	Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus.	Farrer AG, Wright SL, Skelly E, Eisenhofer R, Dobney K, Weyrich LS.	Sci Rep	10.1038/s41598-021-86100-w	2021
	Microbial profile on metallic and ceramic bracket materials.	Anhoury P, Nathanson D, Hughes CV, Socransky S, Feres M, Chou LL.	Angle Orthod	10.1043/0003-3219(2002)072<0338:mpomac>2.0.co;2	2002
	R/G Value-A Numeric Index of Individual Periodontal Health and Oral Microbiome Dynamics.	Najmanova L, Sabova L, Lenartova M, Janatova T, Mysak J, Vetrovsky T, Tesinska B, Balikova Novotna G, Koberska M, Broukal Z, Duskova J, Podzimek S, Janata J.	Front Cell Infect Microbiol	10.3389/fcimb.2021.602643	2021
Metabolism	Obesity alters composition and diversity of the oral microbiota in patients with type 2 diabetes mellitus independently of glycemic control.	Tam J, Hoffmann T, Fischer S, Bornstein S, Grassler J, Noack B.	PLoS One	10.1371/journal.pone.0204724	2018
	Levels of Selenomonas species in generalized aggressive periodontitis.	Goncalves LF, Fermiano D, Feres M, Figueiredo LC, Teles FR, Mayer MP, Faveri M.	J Periodontal Res	10.1111/j.1600-0765.2012.01485.x	2012
	Comparison of microbial changes in early redeveloping biofilms on natural teeth and dentures.	Teles FR, Teles RP, Sachdeo A, Uzel NG, Song XQ, Torresyap G, Singh M, Papas A, Haffajee AD, Socransky SS.	J Periodontol	10.1902/jop.2012.110506	2012
Phylogeny	Functional changes in the oral microbiome after use of fluoride and arginine containing dentifrices: a metagenomic and metatranscriptomic study.	Carda-Dieguez M, Moazzez R, Mira A.	Microbiome	10.1186/s40168-022-01338-4	2022
	HPV infection and bacterial microbiota in the placenta, uterine cervix and oral mucosa.	Tuominen H, Rautava S, Syrjanen S, Collado MC, Rautava J.	Sci Rep	10.1038/s41598-018-27980-3	2018
	Dental Plaque Removal by Ultrasonic Toothbrushes.	Digel I, Kern I, Geenen EM, Akimbekov N, Akimbekov N.	Dent J (Basel)	10.3390/dj8010028	2020
Phylogeny	RNA-oligonucleotide quantification technique (ROQT) for the enumeration of uncultivated bacterial species in subgingival biofilms.	Teles FR, Teles RP, Siegelin Y, Paster B, Haffajee AD, Socransky SS.	Mol Oral Microbiol	10.1111/j.2041-1014.2010.00603.x	2011
	Microbiological findings in prepubertal periodontitis. A case report.	Dibart S, Chapple IL, Skobe Z, Shusterman S, Nedleman HL.	J Periodontol	10.1902/jop.1998.69.10.1172	1998
Genetics	Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent communities in periodontitis.	Dabdoub SM, Ganesan SM, Kumar PS.	Sci Rep	10.1038/srep38993	2016
Phylogeny	Commensal and Pathogenic Members of the Dental Calculus Microbiome of Badia Pozzeveri Individuals from the 11th to 19th Centuries.	Santiago-Rodriguez TM, Fornaciari A, Fornaciari G, Luciani S, Marota I, Vercellotti G, Toranzos GA, Giuffra V, Cano RJ.	Genes (Basel)	10.3390/genes10040299	2019
	Gender-Specific Associations Between Saliva Microbiota and Body Size.	Raju SC, Lagstrom S, Ellonen P, de Vos WM, Eriksson JG, Weiderpass E, Rounge TB.	Front Microbiol	10.3389/fmicb.2019.00767	2019
Phylogeny	Evaluation of periodontal pathogens of the mandibular third molar pericoronitis by using real time PCR.	Sencimen M, Saygun I, Gulses A, Bal V, Acikel CH, Kubar A.	Int Dent J	10.1111/idj.12109	2014
	Microbiota of health, gingivitis, and initial periodontitis.	Tanner A, Maiden MF, Macuch PJ, Murray LL, Kent RL.	J Clin Periodontol	10.1111/j.1600-051x.1998.tb02414.x	1998
Phylogeny	Microbiota of successful osseointegrated dental implants.	Lee KH, Maiden MF, Tanner AC, Weber HP.	J Periodontol	10.1902/jop.1999.70.2.131	1999
	Relationship between invasion of the periodontium by periodontal pathogens and periodontal disease: a systematic review.	Mendes L, Azevedo NF, Felino A, Pinto MG.	Virulence	10.4161/21505594.2014.984566	2015
	Microbial complexes in subgingival plaque.	Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RL.	J Clin Periodontol	10.1111/j.1600-051x.1998.tb02419.x	1998
Pathogenicity	Host-Microbial Interactions in Systemic Lupus Erythematosus and Periodontitis.	Pessoa L, Aleti G, Choudhury S, Nguyen D, Yaskell T, Zhang Y, Li W, Nelson KE, Neto LLS, Sant'Ana ACP, Freire M.	Front Immunol	10.3389/fimmu.2019.02602	2019
Phylogeny	Subgingival microbiota in healthy, well-maintained elder and periodontitis subjects.	Haffajee AD, Cugini MA, Tanner A, Pollack RP, Smith C, Kent RL, Socransky SS.	J Clin Periodontol	10.1111/j.1600-051x.1998.tb02454.x	1998
Phylogeny	Bacterial profiles of root caries in elderly patients.	Preza D, Olsen I, Aas JA, Willumsen T, Grinde B, Paster BJ.	J Clin Microbiol	10.1128/jcm.02411-07	2008
	Clinical, microbiological and immunological profile of healthy, gingivitis and putative active periodontal subjects.	Tanner A, Kent R, Maiden MF, Taubman MA.	J Periodontal Res	10.1111/j.1600-0765.1996.tb00484.x	1996
	Sex-specific differences in the salivary microbiome of caries-active children.	Ortiz S, Herrman E, Lyashenko C, Purcell A, Raslan K, Khor B, Snow M, Forsyth A, Choi D, Maier T, Machida CA.	J Oral Microbiol	10.1080/20002297.2019.1653124	2019
Pathogenicity	A Positive Association between T. gondii Seropositivity and Obesity.	Reeves GM, Mazaheri S, Snitker S, Langenberg P, Giegling I, Hartmann AM, Konte B, Friedl M, Okusaga O, Groer MW, Mangge H, Weghuber D, Allison DB, Rujescu D, Postolache TT.	Front Public Health	10.3389/fpubh.2013.00073	2013
	Analysis of oral bacterial communities: comparison of HOMINGS with a tree-based approach implemented in QIIME.	Palmer RJ, Cotton SL, Kokaras AS, Gardner P, Grisius M, Pelayo E, Warner B, Paster BJ, Alevizos I.	J Oral Microbiol	10.1080/20002297.2019.1586413	2019
	Identification of conserved SARS-CoV-2 spike epitopes that expand public cTfh clonotypes in mild COVID-19 patients.	Lu X, Hosono Y, Nagae M, Ishizuka S, Ishikawa E, Motooka D, Ozaki Y, Sax N, Maeda Y, Kato Y, Morita T, Shinnakasu R, Inoue T, Onodera T, Matsumura T, Shinkai M, Sato T, Nakamura S, Mori S, Kanda T, Nakayama EE, Shioda T, Kurosaki T, Takeda K, Kumanogoh A, Arase H, Nakagami H, Yamashita K, Takahashi Y, Yamasaki S.	J Exp Med	10.1084/jem.20211327	2021
	Association Between Serum Antibodies to Periodontal Bacteria and Rheumatoid Factor in the Third National Health and Nutrition Examination Survey.	Goh CE, Kopp J, Papapanou PN, Molitor JA, Demmer RT.	Arthritis Rheumatol	10.1002/art.39724	2016
Enzymology	Periodontopathogen profile of healthy and oral lichen planus patients with gingivitis or periodontitis.	Ertugrul AS, Arslan U, Dursun R, Hakki SS.	Int J Oral Sci	10.1038/ijos.2013.30	2013
Pathogenicity	Members of the Oral Microbiota Are Associated with IL-8 Release by Gingival Epithelial Cells in Healthy Individuals.	Schueller K, Riva A, Pfeiffer S, Berry D, Somoza V.	Front Microbiol	10.3389/fmicb.2017.00416	2017
Phylogeny	Identification of Selenomonas species by whole-genomic DNA probes, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, biochemical tests and cellular fatty acid analysis.	Maiden MF, Tanner A, Moore WE.	Oral Microbiol Immunol	10.1111/j.1399-302x.1992.tb00012.x	1992
	Oral Bacteria, Virus and Fungi in Saliva and Tissue Samples from Adult Subjects with Oral Squamous Cell Carcinoma: An Umbrella Review.	Di Spirito F, Di Palo MP, Folliero V, Cannata D, Franci G, Martina S, Amato M.	Cancers (Basel)	10.3390/cancers15235540	2023
Phylogeny	Factors affecting human supragingival biofilm composition. II. Tooth position.	Haffajee AD, Teles RP, Patel MR, Song X, Yaskell T, Socransky SS.	J Periodontal Res	10.1111/j.1600-0765.2008.01155.x	2009
Enzymology	Newly delineated periodontal pathogens with special reference to selenomonas species.	Tanner A, Bouldin HD, Maiden MF.	Infection	10.1007/bf01644027	1989
	Interplay Among the Oral Microbiome, Oral Cavity Conditions, the Host Immune Response, Diabetes Mellitus, and Its Associated-Risk Factors-An Overview.	Negrini TC, Carlos IZ, Duque C, Caiaffa KS, Arthur RA.	Front Oral Health	10.3389/froh.2021.697428	2021
Phylogeny	Design and validation of a DNA-microarray for phylogenetic analysis of bacterial communities in different oral samples and dental implants.	Parolin C, Giordani B, Nahui Palomino RA, Biagi E, Severgnini M, Consolandi C, Caredda G, Storelli S, Strohmenger L, Vitali B.	Sci Rep	10.1038/s41598-017-06743-6	2017
Phylogeny	Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray.	Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, Haffajee AD, Socransky SS, Hasturk H, Van Dyke TE, Dewhirst F, Paster BJ.	J Periodontol	10.1902/jop.2009.090185	2009
	The Impact of Maltitol-Sweetened Chewing Gum on the Dental Plaque Biofilm Microbiota Composition.	Keijser BJF, van den Broek TJ, Slot DE, van Twillert L, Kool J, Thabuis C, Ossendrijver M, van der Weijden FA, Montijn RC.	Front Microbiol	10.3389/fmicb.2018.00381	2018
Metabolism	Salivary inflammatory markers and microbiome in normoglycemic lean and obese children compared to obese children with type 2 diabetes.	Janem WF, Scannapieco FA, Sabharwal A, Tsompana M, Berman HA, Haase EM, Miecznikowski JC, Mastrandrea LD.	PLoS One	10.1371/journal.pone.0172647	2017
Pathogenicity	Periodontitis in early and chronic rheumatoid arthritis: a prospective follow-up study in Finnish population.	Ayravainen L, Leirisalo-Repo M, Kuuliala A, Ahola K, Koivuniemi R, Meurman JH, Heikkinen AM.	BMJ Open	10.1136/bmjopen-2016-011916	2017
Enzymology	Effect of periodontal therapy on the subgingival microbiota over a 2-year monitoring period. I. Overall effect and kinetics of change.	Socransky SS, Haffajee AD, Teles R, Wennstrom JL, Lindhe J, Bogren A, Hasturk H, van Dyke T, Wang X, Goodson JM.	J Clin Periodontol	10.1111/jcpe.12117	2013
Pathogenicity	Oxidative Stress and IgG Antibody Modify Periodontitis-CRP Association.	Singer RE, Moss K, Kim SJ, Beck JD, Offenbacher S.	J Dent Res	10.1177/0022034515602693	2015
Phylogeny	Child Weight Gain Trajectories Linked To Oral Microbiota Composition.	Craig SJC, Blankenberg D, Parodi ACL, Paul IM, Birch LL, Savage JS, Marini ME, Stokes JL, Nekrutenko A, Reimherr M, Chiaromonte F, Makova KD.	Sci Rep	10.1038/s41598-018-31866-9	2018
	Intraindividual variation in core microbiota in peri-implantitis and periodontitis.	Maruyama N, Maruyama F, Takeuchi Y, Aikawa C, Izumi Y, Nakagawa I.	Sci Rep	10.1038/srep06602	2014
	Analysis of the salivary microbiome using culture-independent techniques.	Lazarevic V, Whiteson K, Gaia N, Gizard Y, Hernandez D, Farinelli L, Osteras M, Francois P, Schrenzel J.	J Clin Bioinforma	10.1186/2043-9113-2-4	2012
	S-nitrosoglutathione accelerates recovery from 5-fluorouracil-induced oral mucositis.	Skeff MA, Brito GA, de Oliveira MG, Braga CM, Cavalcante MM, Baldim V, Holanda-Afonso RC, Silva-Boghossian CM, Colombo AP, Ribeiro RA, Moura-Neto V, Leitao RF.	PLoS One	10.1371/journal.pone.0113378	2014
Phylogeny	Early microbial succession in redeveloping dental biofilms in periodontal health and disease.	Teles FR, Teles RP, Uzel NG, Song XQ, Torresyap G, Socransky SS, Haffajee AD.	J Periodontal Res	10.1111/j.1600-0765.2011.01409.x	2012
Phylogeny	Bacterial community composition of chronic periodontitis and novel oral sampling sites for detecting disease indicators.	Galimanas V, Hall MW, Singh N, Lynch MD, Goldberg M, Tenenbaum H, Cvitkovitch DG, Neufeld JD, Senadheera DB.	Microbiome	10.1186/2049-2618-2-32	2014
	Predictive, preventive, personalised and participatory periodontology: 'the 5Ps age' has already started.	Cafiero C, Matarasso S.	EPMA J	10.1186/1878-5085-4-16	2013
Enzymology	Subgingival and tongue microbiota during early periodontitis.	Tanner AC, Paster BJ, Lu SC, Kanasi E, Kent R, Van Dyke T, Sonis ST.	J Dent Res	10.1177/154405910608500407	2006
Phylogeny	Factors affecting human supragingival biofilm composition. I. Plaque mass.	Haffajee AD, Teles RP, Patel MR, Song X, Veiga N, Socransky SS.	J Periodontal Res	10.1111/j.1600-0765.2008.01154.x	2009
Phylogeny	C-telopeptide pyridinoline cross-links (ICTP) and periodontal pathogens associated with endosseous oral implants.	Oringer RJ, Palys MD, Iranmanesh A, Fiorellini JP, Haffajee AD, Socransky SS, Giannobile WV.	Clin Oral Implants Res	10.1034/j.1600-0501.1996.090602.x	1998
	Filifactor alocis--a new emerging periodontal pathogen.	Aruni AW, Mishra A, Dou Y, Chioma O, Hamilton BN, Fletcher HM.	Microbes Infect	10.1016/j.micinf.2015.03.011	2015
	Saliva from obese individuals suppresses the release of aroma compounds from wine.	Piombino P, Genovese A, Esposito S, Moio L, Cutolo PP, Chambery A, Severino V, Moneta E, Smith DP, Owens SM, Gilbert JA, Ercolini D.	PLoS One	10.1371/journal.pone.0085611	2014
Metabolism	Gingival tissue transcriptomes in experimental gingivitis.	Jonsson D, Ramberg P, Demmer RT, Kebschull M, Dahlen G, Papapanou PN.	J Clin Periodontol	10.1111/j.1600-051x.2011.01719.x	2011
	Coaggregation of Fusobacterium nucleatum, Selenomonas flueggei, Selenomonas infelix, Selenomonas noxia, and Selenomonas sputigena with strains from 11 genera of oral bacteria.	Kolenbrander PE, Andersen RN, Moore LV.	Infect Immun	10.1128/iai.57.10.3194-3203.1989	1989
	Lessons learned and unlearned in periodontal microbiology.	Teles R, Teles F, Frias-Lopez J, Paster B, Haffajee A.	Periodontol 2000	10.1111/prd.12010	2013

References

#8189	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19578
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#60046	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53876
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Selenomonas noxia (DSM 19578, ATCC 43541, JCM 8546)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000160555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media