Selenomonas artemidis (DSM 19719, ATCC 43528, JCM 8543)

Name: Selenomonas artemidis (DSM 19719, ATCC 43528, JCM 8543)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17161

Type strain

Culture col. no. DSM 19719 ATCC 43528 JCM 8543 VPI D22B-14 BCRC 14409 1 more

NCBI tax ID(s) 671224

Special Collections DSMZ JCM CIP

History DSMZ <- JCM <- ATCC <- L. V. H. Moore; VPI D22B-14 JCM <-- ATCC 43528 <-- L. V. H. Moore VPI D22B-14. CIP <- 2005, JCM <- ATCC 43528 <- L. V. H. Moore: strain VPI D22B-14

Links

Selenomonas artemidis DSM 19719 is an anaerobe, Gram-negative, motile bacterium that was isolated from human gingival crevice.

Gram-negative motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 41895

ATCC 43528,JCM 8543,CCRC 14409,BCRC 14409,CIP 108628,DSM 19719

@ref 20215

Last LPSN update 2026-05-29 08:28:57

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Selenomonadales

Family Selenomonadaceae

Genus Selenomonas

Species Selenomonas artemidis

Full scientific name Selenomonas artemidis Moore et al. 1987

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
116508	negative	rod-shaped

Colony morphology

116508

Hemolysis ability0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8261	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8261	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
42017	MEDIUM 20 - for Anaerobic bacteria		Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
116508	CIP Medium 20	Medium recipe at CIP
116508	CIP Medium 433	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8261	positive	growth	37
42017	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
8261	anaerobe
116508	anaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	+	reduction	from API rID32A
116508	17632 ChEBI	nitrate	+	reduction
116508	16301 ChEBI	nitrite	-	reduction
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
116508	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
116508	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	-	3.2.1.23	from API zym
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
116508	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
116508	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116508	ornithine decarboxylase	-	4.1.1.17
116508	oxidase	-
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
116508	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116508	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8261	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Gingiva
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
8261	human gingival crevice	Homo sapiens	USA	USA	North America
67770	Subgingival crevice of a person with juvenile periodontitis	Homo sapiens
116508	Subgingival crevice of a person with juvenile periodontitis	Homo sapiens	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence GQ422716 (>99% sequence identity) for Selenomonas artemidis subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	0
Animal Samples	210
Plant Samples	1
Total Samples	214

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8261	2	Risk group (German classification) According to TRBA 466
116508	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42666v1 assembly for Selenomonas artemidis DSM 19719	scaffold	GCA_000426665	1123249.3	2526164534	1123249	72.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Selenomonas artemidis strain ATCC 43528 16S ribosomal RNA gene, partial sequence	GQ422716	1520		671224
67770	Selenomonas artemidis gene for 16S ribosomal RNA, partial sequence, strain: JCM 8543	LC037219	1505		671224

GC content

@ref	GC-content (mol%)	Method
8261	58
67770	58	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM42666v1 assembly for Selenomonas artemidis DSM 19719
NCBI: GCA_000426665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	49.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	83.85	no
125439	motility	BacteriaNetⓘ	yes	43.28	no
125439	spore_formation	BacteriaNetⓘ	yes	37.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Selenomonas artemidis DSM 19719
PATRIC: 1123249.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	87.65	no
125438	anaerobic	anaerobicⓘ	yes	84.65	no
125438	spore-forming	spore-formingⓘ	no	69.41	no
125438	aerobic	aerobicⓘ	no	91.29	yes
125438	thermophilic	thermophileⓘ	no	76.29	no
125438	flagellated	motile2+ⓘ	yes	64.04	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	ANCHOR: a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.	Gonzalez E, Pitre FE, Brereton NJB.	Environ Microbiol	10.1111/1462-2920.14632	2019
Enzymology	Comparison of randomly cloned and whole genomic DNA probes for the detection of Porphyromonas gingivalis and Bacteroides forsythus.	Wong M, DiRienzo JM, Lai CH, Listgarten MA.	J Periodontal Res	10.1111/j.1600-0765.1996.tb00460.x	1996
Phylogeny	The Association Between Supragingival Plaque Microbial Profiles and the Clinical Severity of Oral Lichen Planus Subtypes: A Cross-Sectional Case-Control Study.	Ok SM, Ju HM, Jeong SH, Ahn YW, Joo JY, Park JH, Kim SY, Chung J, Na HS.	J Clin Med	10.3390/jcm14145078	2025
	Oral microbiome and serological analyses on association of Alzheimer's disease and periodontitis.	Fu KL, Chiu MJ, Wara-Aswapati N, Yang CN, Chang LC, Guo YL, Ni YH, Chen YW.	Oral Dis	10.1111/odi.14348	2023
Phylogeny	Association between exacerbation history and airway bacterial community assessed by extended bacterial culture and sequencing approaches in stable COPD.	Lecomte-Thenot Q, Perotin JM, Hery-Arnaud G, Velo-Suarez L, Brisebarre A, Clarenne A, Gouriou S, Dury S, Deslee G, Muggeo A, Guillard T, RINNOPARI Study Group includes.	Sci Rep	10.1038/s41598-025-14994-x	2025
	Exploring Relationships Within the Microbiome of Root Canal Infections and the Influence of Associated Clinical Parameters.	Mominkhan D, Brito LCN, Yakubu AR, Larson E, Martin L, Patel M, Tavares WLF, Ribeiro-Sobrinho A, Teles F.	Int Endod J	10.1111/iej.70011	2025
	An Update of Salivary Biomarkers for the Diagnosis of Alzheimer's Disease.	Guo H, Yang R, Cheng W, Li Q, Du M.	Int J Mol Sci	10.3390/ijms26052059	2025
Phylogeny	Lower respiratory tract microbiota in patients with clinically suspected nontuberculous mycobacterial pulmonary disease according to the presence of gastroesophageal reflux.	Won EJ, Lee YJ, Kim MJ, Kim TJ, Shin HJ, Kim TO, Kwon YS.	PLoS One	10.1371/journal.pone.0309446	2024
	Fecal microbiota transplantation improves bile acid malabsorption in patients with inflammatory bowel disease: results of microbiota and metabolites from two cohort studies.	Lu G, Zhang S, Wang R, Wu X, Chen Y, Wen Q, Cui B, Zhang F, Li P.	BMC Med	10.1186/s12916-025-04353-y	2025
	The gut-lung axis and microbiome dysbiosis in non-tuberculous mycobacterial infections: immune mechanisms, clinical implications, and therapeutic frontiers	Zhu F, Ying H, Siadat S, Fateh A.	Gut Pathog		2025
	Impact of Nystatin Oral Rinse on Salivary and Supragingival Microbial Community among Adults with Oral Candidiasis.	Zhang L, Manning S, Wu TT, Zeng Y, Lee A, Wu Y, Paster BJ, Chen G, Fiscella K, Xiao J.	Microorganisms	10.3390/microorganisms11061497	2023
Phylogeny	Microbial and proteomic signatures of type 2 diabetes in an Arab population.	Murugesan S, Yousif G, Djekidel MN, Gentilcore G, Grivel JC, Al Khodor S.	J Transl Med	10.1186/s12967-024-05928-8	2024
	Characterizing the microbiota of cleft lip and palate patients: a comprehensive review.	Gershater E, Liu Y, Xue B, Shin MK, Koo H, Zheng Z, Li C.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1159455	2023
	Improved High-Throughput Sequencing of the Human Oral Microbiome: From Illumina to PacBio.	Zhang J, Su L, Wang Y, Deng S.	Can J Infect Dis Med Microbiol	10.1155/2020/6678872	2020
Phylogeny	Oral and Fecal Microbiome in Molar-Incisor Pattern Periodontitis.	Amado PPP, Kawamoto D, Albuquerque-Souza E, Franco DC, Saraiva L, Casarin RCV, Horliana ACRT, Mayer MPA.	Front Cell Infect Microbiol	10.3389/fcimb.2020.583761	2020
	Site- and Time-Dependent Compositional Shifts in Oral Microbiota Communities.	Esberg A, Eriksson L, Johansson I.	Front Oral Health	10.3389/froh.2022.826996	2022
Enzymology	Subgingival Microbiota of Mexicans with Type 2 Diabetes with Different Periodontal and Metabolic Conditions.	Rodriguez-Hernandez AP, Marquez-Corona ML, Pontigo-Loyola AP, Medina-Solis CE, Ximenez-Fyvie LA.	Int J Environ Res Public Health	10.3390/ijerph16173184	2019
Enzymology	Is the Oral Microbiome Associated with Blood Pressure in Older Women?	Gordon JH, LaMonte MJ, Genco RJ, Zhao J, Li L, Hovey KM, Tsompana M, Buck MJ, Andrews CA, Mcskimming DI, Zheng W, Sun Y, Wactawski-Wende J.	High Blood Press Cardiovasc Prev	10.1007/s40292-019-00322-8	2019
	Changes of saliva microbiota in the onset and after the treatment of diabetes in patients with periodontitis.	Yang Y, Liu S, Wang Y, Wang Z, Ding W, Sun X, He K, Feng Q, Zhang X.	Aging (Albany NY)	10.18632/aging.103399	2020
	Functional dysbiosis within dental plaque microbiota in cleft lip and palate patients.	Funahashi K, Shiba T, Watanabe T, Muramoto K, Takeuchi Y, Ogawa T, Izumi Y, Sekizaki T, Nakagawa I, Moriyama K.	Prog Orthod	10.1186/s40510-019-0265-1	2019
	Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem.	Wendl MC, Kota K, Weinstock GM, Mitreva M.	J Math Biol	10.1007/s00285-012-0586-x	2013
Pathogenicity	The inhibitory action of fatty acids on oral bacteria.	Shapiro S.	Oral Microbiol Immunol	10.1111/j.1399-302x.1996.tb00193.x	1996
Pathogenicity	The action of thymol on oral bacteria.	Shapiro S, Guggenheim B.	Oral Microbiol Immunol	10.1111/j.1399-302x.1995.tb00149.x	1995
Phylogeny	Bacterial community composition of chronic periodontitis and novel oral sampling sites for detecting disease indicators.	Galimanas V, Hall MW, Singh N, Lynch MD, Goldberg M, Tenenbaum H, Cvitkovitch DG, Neufeld JD, Senadheera DB.	Microbiome	10.1186/2049-2618-2-32	2014
Phylogeny	Identification of Selenomonas species by whole-genomic DNA probes, sodium dodecyl sulfate-polyacrylamide gel electrophoresis, biochemical tests and cellular fatty acid analysis.	Maiden MF, Tanner A, Moore WE.	Oral Microbiol Immunol	10.1111/j.1399-302x.1992.tb00012.x	1992
Enzymology	Bacteremias caused by Selenomonas artemidis and Selenomonas infelix.	Bisiaux-Salauze B, Perez C, Sebald M, Petit JC.	J Clin Microbiol	10.1128/jcm.28.1.140-142.1990	1990
	Beyond Streptococcus mutans: dental caries onset linked to multiple species by 16S rRNA community analysis.	Gross EL, Beall CJ, Kutsch SR, Firestone ND, Leys EJ, Griffen AL.	PLoS One	10.1371/journal.pone.0047722	2012
Phylogeny	Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray.	Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, Haffajee AD, Socransky SS, Hasturk H, Van Dyke TE, Dewhirst F, Paster BJ.	J Periodontol	10.1902/jop.2009.090185	2009

References

#8261	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19719
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#42017	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116508	Collection of Institut Pasteur ; Curators of the CIP; CIP 108628
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Selenomonas artemidis (DSM 19719, ATCC 43528, JCM 8543)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000426665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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