Name: Bifidobacterium pseudocatenulatum B1279
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1713

Type strain:

Species: Bifidobacterium pseudocatenulatum

Strain Designation: B1279

Culture col. no.: DSM 20438, ATCC 27919, CCUG 34989, JCM 1200, BCRC 15476, CCM 7094, CECT 5776, CGMCC 1.2277, CIP 104168, HAMBI 562, KCTC 3223, LMG 10505, NCAIM B.02022, VTT E-991439

Strain history: ATCC 27919 <-- V. Scardovi B1279.

NCBI tax ID(s): 547043 (strain), 28026 (species)

Other strains from Bifidobacterium pseudocatenulatum

B. pseudocatenulatum F171, DSM 20439
B. pseudocatenulatum CCUG 51771, CCM 3761
B. pseudocatenulatum JCM 11661, CGMCC 1.3002
B. pseudocatenulatum JCM 7040, LMG 18903
B. pseudocatenulatum JCM 7041, LMG 18904

Section

Bifidobacterium pseudocatenulatum B1279 is an anaerobe, mesophilic bacterium that was isolated from infant faeces.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium pseudocatenulatum**
	Full Scientific Name (PNU)	Bifidobacterium pseudocatenulatum Scardovi et al. 1979 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8813]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8813]

Culture medium growth

[Ref.: #8813]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8813]

Culture medium composition

expand / minimize

[Ref.: #40674]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #40674]

Culture medium growth

[Ref.: #40674]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8813]	growth	37 °C
[Ref.: #40674]	growth	37 °C
[Ref.: #52437]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8813]	Temperature range	mesophilic
[Ref.: #40674]	Temperature range	mesophilic
[Ref.: #52437]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8813]	Oxygen tolerance	anaerobe
[Ref.: #52437]	Oxygen tolerance	anaerobe

[Ref.: #8813]	Murein short key	A11.11
[Ref.: #8813]	Murein types	A3alpha L-Lys(L-Orn)-L-Ala₂-L-Ser

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8813]	8314	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	-	+	-	+	-	+	-	+	-	-	+	+	+	-	-	-	-	-	+	+	-	+	+	-	-	-	-	-	-	-	-	-
[Ref.: #8813]	8313	-	-	-	-	+	+	+	-	-	-	+	+	+	+/-	-	-	-	-	-	+	-	+/-	-	+	+	+	+	-	-	+	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8813]	Sample type/isolated from	infant faeces

[Ref.: #52437]	Sample type/isolated from	Infant feces

[Ref.: #67770]	Sample type/isolated from	Feces of an infant
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Child

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071796 (>99% sequence identity) for Actinobacteria from Microbeatlas

Aquatic Samples	13261
Soil Samples	5076
Animal Samples	262631
Plant Samples	1911
Total Samples	282879

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8813]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bifidobacterium pseudocatenulatum (ATCC 27919) 16S ribosomal RNA gene, partial	M84785	641	ENA	28026 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudocatenulatum DSM 20438 strain JCM 1200 16S ribosomal RNA gene, partial sequence	GQ227711	287	ENA	547043 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudocatenulatum gene for 16S rRNA, partial sequence, strain: JCM 1200	AB507133	684	ENA	547043 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudocatenulatum gene for 16S rRNA, partial sequence, strain: JCM 1200	D86187	1519	ENA	547043 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudocatenulatum strain KCTC 3223 16S ribosomal RNA gene, partial sequence	GU361827	1480	ENA	28026 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudocatenulatum strain LMG10505 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence	FJ231744	792	ENA	28026 tax ID	*
[Ref.: #67770]	Bifidobacterium pseudocatenulatum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1200	LC071796	1392	ENA	547043 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 JCM 1200	GCA_001025215	complete	GenBank	547043 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200	547043.6	wgs	PATRIC	547043 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505	547043.16	wgs	PATRIC	547043 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505	547043.19	complete	PATRIC	547043 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505	547043.20	wgs	PATRIC	547043 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudocatenulatum DSM 20438, JCM 1200, LMG 10505	2597490216	draft	JGI IMG/M	547043 tax ID	*

[Ref.: #8813]	GC-content	57.5 mol%
[Ref.: #67770]	GC-content	57.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #8813]

Culture collection no.

DSM 20438, ATCC 27919, CCUG 34989, JCM 1200, BCRC 15476, CCM 7094, CECT 5776, CGMCC 1.2277, CIP 104168, HAMBI 562, KCTC 3223, LMG 10505, NCAIM B.02022, VTT E-991439

[Ref.: #20218]

Associated Passport(s) in StrainInfo

5531, 5527

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Phytate degradation by human gut isolated Bifidobacterium pseudocatenulatum ATCC27919 and its probiotic potential.	Haros M, Carlsson NG, Almgren A, Larsson-Alminger M, Sandberg AS, Andlid T	Int J Food Microbiol	10.1016/j.ijfoodmicro.2009.07.015	2009	*
Phylogeny	Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces.	Morita H, Nakano A, Onoda H, Toh H, Oshima K, Takami H, Murakami M, Fukuda S, Takizawa T, Kuwahara T, Ohno H, Tanabe S, Hattori M	Int J Syst Evol Microbiol	10.1099/ijs.0.024521-0	2010	*
Metabolism	Novel phytases from Bifidobacterium pseudocatenulatum ATCC 27919 and Bifidobacterium longum subsp. infantis ATCC 15697.	Tamayo-Ramos JA, Sanz-Penella JM, Yebra MJ, Monedero V, Haros M	Appl Environ Microbiol	10.1128/AEM.00782-12	2012	*
Pathogenicity	Prebiotic-non-digestible oligosaccharides preference of probiotic bifidobacteria and antimicrobial activity against Clostridium difficile.	Kondepudi KK, Ambalam P, Nilsson I, Wadstrom T, Ljungh A	Anaerobe	10.1016/j.anaerobe.2012.08.005	2012	*
Phylogeny	Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla).	Tsuchida S, Takahashi S, Nguema PPM, Fujita S, Kitahara M, Yamagiwa J, Ngomanda A, Ohkuma M, Ushida K	Int J Syst Evol Microbiol	10.1099/ijs.0.055186-0	2013	*
Metabolism	Myo-inositol hexakisphosphate degradation by Bifidobacterium pseudocatenulatum ATCC 27919 improves mineral availability of high fibre rye-wheat sour bread.	Garcia-Mantrana I, Monedero V, Haros M	Food Chem	10.1016/j.foodchem.2015.01.099	2015	*
Genetics	Complete genome sequence of Bifidobacterium pseudocatenulatum JCM 1200(T) isolated from infant feces.	Morita H, Toh H, Oshima K, Nakano A, Arakawa K, Takayama Y, Kurokawa R, Takanashi K, Honda K, Hattori M	J Biotechnol	10.1016/j.jbiotec.2015.06.416	2015	*
	Measurements of Intra- and Extra-Cellular 5-Methyltetrahydrofolate Indicate that Bifidobacterium Adolescentis DSM 20083(T) and Bifidobacterium Pseudocatenulatum DSM 20438(T) Do Not Actively Excrete 5-Methyltetrahydrofolate In vitro.	Kopp M, Durr K, Steigleder M, Clavel T, Rychlik M	Front Microbiol	10.3389/fmicb.2017.00445	2017	*

References

#8813

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20438

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40674 ; Curators of the CIP;
#52437 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34989

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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