Dialister histaminiformans (DSM 15230, ATCC BAA-610, CCUG 48567)

Name: Dialister histaminiformans (DSM 15230, ATCC BAA-610, CCUG 48567)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17113

Type strain

Strain Designation MR2

Culture col. no. DSM 15230 ATCC BAA-610 CCUG 48567 MR2 CIP 108260

NCBI tax ID(s) 209880

Special Collections DSMZ CCUG CIP

Links

Dialister histaminiformans MR2 is an anaerobe, mesophilic, Gram-negative prokaryote that was isolated from bovine rumen.

Gram-negative oval-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100495

ATCC BAA-610,DSM 15230,CCUG 48567,CIP 108260

@ref 20215

Last LPSN update 2025-12-16 09:51:00

Domain Bacillati

Phylum Bacillota

Class Negativicutes

Order Veillonellales

Family Veillonellaceae

Genus Dialister

Species Dialister histaminiformans

Full scientific name Dialister histaminiformans (Garner et al. 2003) Heng et al. 2025

Synonyms (1)

Allisonella histaminiformans

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119923	negative	oval-shaped

Colony morphology

58233

Incubation period3-5 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5770	ALLISONELLA MEDIUM (DSMZ Medium 1006)	Medium recipe at MediaDive	Name: ALLISONELLA MEDIUM (DSMZ Medium 1006) Composition: DL-Histidine 7.76892 g/l Yeast extract 3.98406 g/l Na2CO3 3.98406 g/l Trypticase peptone 0.996016 g/l L-Cysteine HCl x H2O 0.498008 g/l NaCl 0.478088 g/l (NH4)2SO4 0.478088 g/l KH2PO4 0.288845 g/l K2HPO4 0.288845 g/l MgSO4 x 7 H2O 0.0996016 g/l CaCl2 x 2 H2O 0.063745 g/l Sodium resazurin 0.000498008 g/l iso-Valeric acid Acetic acid Propionic acid Butyric acid n-Valeric acid iso-Butyric acid DL-2-Methylbutyric acid Distilled water
33929	MEDIUM 574 - for Alisonella histaminiformis		Sodium carbonate decahydrate (4.000 g);Distilled water make up to (1000.000ml);Sodium chloride (480.000 mg);Magnesium sulphate heptahydrate (100.000 mg);Calcium chloride dihydrate (64.000 mg);Yeast extract (4.000 g);Ammonium sulphate (480.000 mg);Potassiu
119923	CIP Medium 574	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5770	positive	growth	37	mesophilic
33929	positive	growth	37	mesophilic
58233	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
5770	anaerobe
58233	anaerobe
125438	anaerobe
125439	facultative anaerobe

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	95.45	21 of 22
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	80	12 of 15
66794	flavin biosynthesis	80	12 of 15
66794	vitamin B1 metabolism	76.92	10 of 13
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	NAD metabolism	66.67	12 of 18
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	photosynthesis	64.29	9 of 14
66794	purine metabolism	61.7	58 of 94
66794	phenylalanine metabolism	61.54	8 of 13
66794	propanol degradation	57.14	4 of 7
66794	d-mannose degradation	55.56	5 of 9
66794	molybdenum cofactor biosynthesis	55.56	5 of 9
66794	alanine metabolism	55.17	16 of 29
66794	glycolysis	52.94	9 of 17
66794	ethanol fermentation	50	1 of 2
66794	gluconeogenesis	50	4 of 8
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	glycogen biosynthesis	50	2 of 4
66794	threonine metabolism	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	tyrosine metabolism	50	7 of 14
66794	adipate degradation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	oxidative phosphorylation	46.15	42 of 91
66794	methionine metabolism	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	lipid metabolism	45.16	14 of 31
66794	tryptophan metabolism	44.74	17 of 38
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	starch degradation	40	4 of 10
66794	methylglyoxal degradation	40	2 of 5
66794	non-pathway related	39.47	15 of 38
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	lysine metabolism	38.1	16 of 42
66794	C4 and CAM-carbon fixation	37.5	3 of 8
66794	pentose phosphate pathway	36.36	4 of 11
66794	vitamin B6 metabolism	36.36	4 of 11
66794	isoprenoid biosynthesis	34.62	9 of 26
66794	degradation of hexoses	33.33	6 of 18
66794	cyanate degradation	33.33	1 of 3
66794	formaldehyde oxidation	33.33	1 of 3
66794	acetoin degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	cysteine metabolism	33.33	6 of 18
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	arginine metabolism	33.33	8 of 24
66794	octane oxidation	33.33	1 of 3
66794	histidine metabolism	31.03	9 of 29
66794	leucine metabolism	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	glycine metabolism	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	metabolism of disaccharids	27.27	3 of 11
66794	degradation of pentoses	25	7 of 28
66794	lactate fermentation	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4
66794	isoleucine metabolism	25	2 of 8
66794	sulfate reduction	23.08	3 of 13
66794	valine metabolism	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5770	bovine rumen	NY, Ithaca	USA	USA	North America
58233	Bovine rumen		USA	USA	North America
119923	Animal, Cattle, rumen	New York	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF548373 (>99% sequence identity) for Allisonella histaminiformans subclade from Microbeatlas

Aquatic Samples	1626
Soil Samples	652
Animal Samples	68771
Plant Samples	345
Total Samples	71394

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
5770	yes, in single cases	1	Risk group (German classification) According to TRBA 466
119923		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2595698240 annotated assembly for Allisonella histaminiformans DSM 15230	scaffold	GCA_900103425	209880.28	2595698240	209880	66.76

Genome browser: GCA_900103425

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5770	Allisonella histaminiformans 16S ribosomal RNA gene, partial sequence	AF548373	1537		209880

GC content

5770

GC-content (mol%)46.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Allisonella histaminiformans DSM 15230
NCBI: GCA_900103425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	87.00	no
125439	motility	BacteriaNetⓘ	yes	81.10	no
125439	gram_stain	BacteriaNetⓘ	variable	88.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Allisonella histaminiformans DSM 15230
NCBI: GCA_900103425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	88.71	no
125438	anaerobic	anaerobicⓘ	yes	91.66	yes
125438	aerobic	aerobicⓘ	no	96.64	yes
125438	spore-forming	spore-formingⓘ	no	86.22	no
125438	thermophilic	thermophileⓘ	no	91.42	no
125438	flagellated	motile2+ⓘ	no	85.63	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Allisonella histaminiformans gen. nov., sp. nov. A novel bacterium that produces histamine, utilizes histidine as its sole energy source, and could play a role in bovine and equine laminitis.	Garner MR, Flint JF, Russell JB	Syst Appl Microbiol	10.1078/07232020260517625	2002

References

#5770	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15230
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#33929	; Curators of the CIP;
#58233	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48567
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119923	Collection of Institut Pasteur ; Curators of the CIP; CIP 108260
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dialister histaminiformans (DSM 15230, ATCC BAA-610, CCUG 48567)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900103425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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