Bifidobacterium longum subsp. longum E194b (Variant a) | Type strain | DSM 20219, ATCC 15707, NCTC 11818, CCUG 28903, LMG 13197, JCM 1217, LMG 10497

Strain identifier

BacDive ID: 1709

Type strain:

Species: Bifidobacterium longum subsp. longum

Strain Designation: E194b (Variant a)

Culture col. no.: DSM 20219, ATCC 15707, NCTC 11818, CCUG 28903, LMG 13197, JCM 1217, LMG 10497

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #8612]	Domain	Bacteria
[Ref.: #8612]	Phylum	Actinobacteria
[Ref.: #8612]	Class	Actinobacteria
[Ref.: #8612]	Order	Bifidobacteriales
[Ref.: #8612]	Family	Bifidobacteriaceae
[Ref.: #8612]	Genus	Bifidobacterium
[Ref.: #8612]	Species	Bifidobacterium longum subsp. longum
[Ref.: #8612]	Full Scientific Name	Bifidobacterium longum subsp. longum Reuter 1963
[Ref.: #8612]	Strain Designation	E194b (Variant a)
[Ref.: #8612]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	25-03-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Bifidobacteriaceae		Int. J. Syst. Bacteriol. 47:487*
[Ref.: #20215]	Genus	Bifidobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Bifidobacterium longum	species (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Full Scientific Name	Bifidobacterium longum Reuter 1963

[Ref.: #20215]

Synonym

Bifidobacterium longum subsp. longum

Information on morphological and physiological propertiesMorphology and physiology

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8612]	2599	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	+	+	+	+	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-
[Ref.: #8612]	2598	-	-	-	-	+	+	+	-	-	-	+	+	+	+	+	-	-	-	-	-	+/-	+	-	-	-	-	-	-	+	+	+	+	+	+	+	+	+/-	-	-	-	+/-	-	-	-	-	-	-	-	-	+/-
[Ref.: #8612]	2597	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	+	-	-	+	+	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-
[Ref.: #8612]	2596	-	-	-	-	+	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

[Ref.: #8612]	Murein short key	A21.03
[Ref.: #8612]	Murein types	A3ß L-Orn-L-Ser-L-Ala-L-Thr-L-Ala

[Ref.: #8612]	Oxygen tolerance	anaerobe
[Ref.: #49449]	Oxygen tolerance	anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #8612]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58), 37°C, anaerobic

[Ref.: #8612]

Culture medium growth

[Ref.: #8612]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #38030]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #38030]

Culture medium growth

[Ref.: #38030]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8612]	growth	37 ̊C
[Ref.: #38030]	growth	37 ̊C
[Ref.: #49449]	growth	37 ̊C

[Ref.: #8612]	Temperature range	mesophilic
[Ref.: #38030]	Temperature range	mesophilic
[Ref.: #49449]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #8612]

Sample type/isolated from

intestine of adult

[Ref.: #49449]

Sample type/isolated from

Human intestine,adult

Isolation sources categories

#Host Body-Site

#Gastrointestinal tract

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #8612]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #8612]

GC-content

61.4 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum rpoB gene for RNA polymerase beta chain, partial cds, strain: ATCC 15707	AB198728	129	216816	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum rpoB gene for RNA polymerase beta chain, partial cds, strain: ATCC 15707, rifaximin resistant clone	AB198729	129	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain ATCC 15707 L-lactate dehydrogenase gene, partial cds	AF261669	312	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain ATCC 15707 transaldolase gene, partial cds	AF417531	301	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain ATCC 15707 Tuf gene, partial cds	AY372042	990	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum xylulose-5-phosphate/fructose-6-phosphate phosphoketolase (xfp) gene, complete cds	AY518215	4962	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum 60 kDa chaperonin (cpn60) gene, partial cds	AY835622	552	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain KCTC 3128 RNA polymerase beta subunit (rpoB) gene, partial cds	EU780720	315	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain ATCC 15707 ATP synthase beta subunit gene, partial cds	JF775853	562	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain ATCC 15707 Clp protease ATP binding subunit (clpC) gene, partial cds	JF775897	556	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain ATCC 15707 Hsp70 molecular chaperone DnaK (dnaK) gene, partial cds	JF775941	425	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain ATCC 15707 L-lactate dehydrogenase (ldl) gene, partial cds	JF775985	409	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain ATCC 15707 amidophosphoribosyl transferase PurF (purF) gene, partial cds	JF776029	486	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain ATCC 15707 recombinase A (recA) gene, partial cds	JF776073	492	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain ATCC 15707 EF-Tu elongation factor Tu (tuf) gene, partial cds	JF776117	488	1679	*
[Ref.: #20218]	INSDC Sequence	Bifidobacterium longum strain ATCC 15707 16S ribosomal RNA gene, partial sequence	M58739	1476	216816	*
[Ref.: #20218]	INSDC Sequence	Bifidobacterium longum (ATCC 15707) 16S ribosomal RNA gene, partial	M84781	642	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain BCRC11847 Tuf (tuf) gene, partial cds	FJ549349	770	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain CECT 4503 alpha-L-arabinofuranosidase gene, partial cds	DQ273675	555	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum pyruvate kinase gene, partial cds	AF384978	326	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain DSM 20219 putative xylulose 5-phosphate/fructose 6-phosphate phosphoketolase (xfp) gene, partial cds	AY377409	503	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain DSM 20219 glutamine fructose-6-phosphate transaminase (glmS) gene, complete cds	EF445294	1893	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain DSM 20219 23S ribosomal RNA gene, partial sequence	GQ340902	927	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain DSM 20219 16S ribosomal RNA gene, partial sequence	HQ012022	940	1679	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum subsp. longum JCM 1217 gene for 16S rRNA, partial sequence	AB116313	476	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum lnbp gene for Lacto-N-biose phosphorylase, complete cds	AB181926	2335	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum galT, galK genes for UDP-glucose-hexose-1-phosphate uridylyltransferase, galactokinase, complete cds	AB303573	2637	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum ppk gene for polyphosphate kinase, complete cds	AB303837	2817	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum spl gene for sucrose phosphorylase, complete cds	AB303838	1819	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum lnpA, lnpB, lnpC, lnpD genes for lacto-N-biose phosphorylase, N-acetylhexosamine kinase, UDP-glucose-hexose-1-phosphate uridylyltransferase, UDP-glucose 4-epimerase, complete cds	AB303839	6611	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum gene for 16S rRNA, partial sequence, strain: JCM 1217	AB507101	669	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum subsp. longum galE2 gene for UDP-glucose 4-epimerase 2, complete cds	AB515341	1014	1679	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum subsp. longum hypBA2 gene for beta-L-arabinobiosidase, complete cds	AB562506	5832	1679	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum cscA gene for beta-fructofuranosidase, complete cds, strain: JCM 1217	AB591083	1557	565042	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Bifidobacterium longum subsp. longum hypBA1 gene for beta-L-arabinofuranosidase, complete cds	AB619598	1977	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum heat shock protein 60 (hsp60) gene, partial cds	AF240578	590	565042	*
[Ref.: #20218]	DDBJ Genome project data	Bifidobacterium longum subsp. longum JCM 1217 DNA, complete genome	AP010888	2385164	565042	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain JCM1217 endo-alpha-N-acetylgalactosaminidase (engBF) gene, complete cds	AY836679	6218	565042	*
[Ref.: #20218]	INSDC Sequence	TPA_exp: Bifidobacterium longum subsp. longum JCM 1217 lacto-N-biosidase (lnbX) and chaperon for lacto-N-biosidase (lnbY) genes, complete cds	BK008766	5950	1679	*
[Ref.: #20218]	INSDC Sequence	TPA_exp: Bifidobacterium longum subsp. longum BL1,3Gal gene for exo-beta-1,3-galactanase, complete cds, strain: JCM 1217	BR001188	3837	1679	*
[Ref.: #20218]	INSDC Sequence	Sequence 1 from Patent EP1767645	CS499386	5901	565042	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain JCM1217 galacto-N-biose/lacto-N-biose I transporter substrate-binding protein (gltA), galacto-N-biose/lacto-N-biose I transporter integral membrane protein (gltB), and galacto-N-biose/lacto-N-biose I transporter integral membrane protein (gltC) genes, complete cds	EU193949	5243	565042	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Bifidobacterium longum subsp. longum JCM 1217 transfer-messenger mRNA Bifid_longu_JCM121.2, single chain mature transcript	HG784113	376	565042	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Bifidobacterium longum subsp. longum JCM 1217 transfer-messenger mRNA Bifid_longu_JCM121.1, single chain mature transcript	HG787712	397	565042	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain KCTC 3128 16S ribosomal RNA gene, partial sequence	GU361823	1477	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum subsp. longum strain KCTC 3128 heat shock protein 60 (hsp60) gene, partial cds	GU361846	604	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain LMG 13197 TetW (tetW) gene, partial cds	EF489471	945	216816	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain LMG 13197 TetW-regulatory peptide and TetW (tetW) genes, complete cds	EU434752	2578	216816	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Bifidobacterium longum subsp. longum xynF gene for putative extracellular beta-xylosidase, type strain LMG 13197T	HG316486	3189	1679	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Bifidobacterium longum strain NCFB 2259 Ctr (ctr) gene, complete cds	DQ017587	1062	216816	*

Availability in culture collectionsStrain availability

[Ref.: #8612]

Culture collection no.

DSM 20219, ATCC 15707, NCTC 11818, CCUG 28903, LMG 13197, JCM 1217, LMG 10497

[Ref.: #8612]

Strain history

<- G. Reuter, E194b (Variant a)

[Ref.: #20218]

Associated Passport(s) in StrainInfo

865044, 864915, 864926

References

#8612

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20219

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38030 ; Curators of the CIP;
#49449 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28903
* These References are textmined

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