Name: Kosmotoga shengliensis 2SM-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17073

Type strain:

Species: Kosmotoga shengliensis

Strain Designation: 2SM-2

Culture col. no.: DSM 22460, ACCC 00496

Strain history: <- Y. Feng, Chengdu Biogas Sci. Res. Inst., Ministry of Agriculture (BIOMA), China; 2SM-2 <- X. Liu and L. Cheng {2007}

NCBI tax ID(s): 501340 (species)

SI-ID 406026

DSM 22460

Section

Kosmotoga shengliensis 2SM-2 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from oil production fluid.

coccus-shaped
Gram-negative
anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Kosmotogales*
	Family	*Kosmotogaceae*
	Genus	*Kosmotoga*
	Species	**Kosmotoga shengliensis**
	Full Scientific Name (LPSN)	Kosmotoga shengliensis (Feng et al. 2010) Nunoura et al. 2013

Synonym

Thermococcoides shengliensis

Information on morphological and physiological properties Morphology

[Ref.: #29476]	Gram stain	negative

[Ref.: #29476]	Cell width	0.8 µm

[Ref.: #29476]	Cell shape	coccus-shaped

[Ref.: #29476]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16338]

Culture medium

KOSMOTOGA SHENGLIENSIS MEDIUM (DSMZ Medium 1248)

[Ref.: #16338]

Culture medium growth

[Ref.: #16338]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16338]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16338]	growth	65 °C
[Ref.: #29476]	growth	45-75 °C
[Ref.: #29476]	optimum	65 °C

[Ref.: #16338]	Temperature range	thermophilic
[Ref.: #29476]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29476]			optimum	7
[Ref.: #29476]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16338]	Oxygen tolerance	anaerobe
[Ref.: #29476]	Oxygen tolerance	anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29476]		NaCl		growth	0-40	g/L
[Ref.: #29476]		NaCl		optimum	15	g/L

[Ref.: #29476]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29476]	acetate ChEBI	+	carbon source
[Ref.: #29476]	formate ChEBI	+	carbon source
[Ref.: #29476]	lactose ChEBI	+	carbon source
[Ref.: #29476]	xylose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #29476]		hydrogen sulfide ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16338]	Sample type/isolated from	oil production fluid
[Ref.: #16338]	Geographic location (country and/or sea, region)	Shengli Oilfield
[Ref.: #16338]	Country	China
[Ref.: #16338]	Country ISO 3 Code	CHN
[Ref.: #16338]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU276414 (>99% sequence identity) for Kosmotoga olearia from Microbeatlas

Aquatic Samples	173
Soil Samples	26
Animal Samples	5
Plant Samples	5
Total Samples	209

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16338]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16338]	Thermococcoides shengliensis strain 2SM-2 16S ribosomal RNA gene, partial sequence	EU276414	1448	ENA	501340 tax ID

[Ref.: #16338]	GC-content	36.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29476]	GC-content	36.4 mol%

Availability in culture collections External links

[Ref.: #16338]

Culture collection no.

DSM 22460, ACCC 00496

[Ref.: #86073]

SI-ID 406026

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kosmotoga arenicorallina sp. nov. a thermophilic and obligately anaerobic heterotroph isolated from a shallow hydrothermal system occurring within a coral reef, southern part of the Yaeyama Archipelago, Japan, reclassification of Thermococcoides shengliensis as Kosmotoga shengliensis comb. nov., and emended description of the genus Kosmotoga.	Nunoura T, Hirai M, Imachi H, Miyazaki M, Makita H, Hirayama H, Furushima Y, Yamamoto H, Takai K	Arch Microbiol	10.1007/s00203-010-0611-7	2010	*
Phylogeny	Thermococcoides shengliensis gen. nov., sp. nov., a new member of the order Thermotogales isolated from oil-production fluid.	Feng Y, Cheng L, Zhang X, Li X, Deng Y, Zhang H	Int J Syst Evol Microbiol	10.1099/ijs.0.013912-0	2009	*

References

#16338

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22460

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29476

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25878 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86073

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406026.1 )

#25878

IJSEM 932 2010 ( DOI 10.1099/ijs.0.013912-0 , PubMed 19661500 )

* These data were automatically processed and therefore are not curated

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