Name: Kosmotoga olearia DSM 21960
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17071

Type strain:

Species: Kosmotoga olearia

Culture col. no.: DSM 21960, ATCC BAA-1733, TBF 19.5.1

Strain history: <- K. M. Noll, Univ. Connecticut, Storrs CT, USA; TBF 19.5.1 <- H. Dahle and C. L. Nesbø

NCBI tax ID(s): 521045 (strain), 651457 (species)

SI-ID 396949

DSM 21960

Section

Kosmotoga olearia DSM 21960 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from oil production fluid.

Gram-negative
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Kosmotogales*
	Family	*Kosmotogaceae*
	Genus	*Kosmotoga*
	Species	**Kosmotoga olearia**
	Full Scientific Name (LPSN)	Kosmotoga olearia DiPippo et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29179]	Gram stain	negative

[Ref.: #29179]	Cell length	1 µm

[Ref.: #29179]	Cell width	0.55 µm

[Ref.: #29179]	Cell shape	rod-shaped

[Ref.: #29179]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16067]

Culture medium

KOSMOTOGA OLEARIA MEDIUM (DSMZ Medium 1163)

[Ref.: #16067]

Culture medium growth

[Ref.: #16067]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16067]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16067]	growth	65 °C
[Ref.: #29179]	growth	20-80 °C
[Ref.: #29179]	optimum	65 °C

[Ref.: #16067]	Temperature range	thermophilic
[Ref.: #29179]	Temperature range	hyperthermophilic
[Ref.: #29179]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29179]			optimum	6.8
[Ref.: #29179]			growth	5.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16067]	Oxygen tolerance	anaerobe
[Ref.: #29179]	Oxygen tolerance	anaerobe

[Ref.: #29179]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29179]		NaCl		optimum	2.5-3.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29179]	fructose ChEBI	+	carbon source
[Ref.: #29179]	galactose ChEBI	+	carbon source
[Ref.: #29179]	maltose ChEBI	+	carbon source
[Ref.: #29179]	mannose ChEBI	+	carbon source
[Ref.: #29179]	propionate ChEBI	+	carbon source
[Ref.: #29179]	pyruvate ChEBI	+	carbon source
[Ref.: #29179]	raffinose ChEBI	+	carbon source
[Ref.: #29179]	ribose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16067]	Sample type/isolated from	oil production fluid
[Ref.: #16067]	Geographic location (country and/or sea, region)	North Sea off Norwegian coast, Troll B platform
[Ref.: #16067]	Country	Norway
[Ref.: #16067]	Country ISO 3 Code	NOR
[Ref.: #16067]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Oil reservoir

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU980631 (>99% sequence identity) for Kosmotoga olearia from Microbeatlas

Aquatic Samples	173
Soil Samples	26
Animal Samples	5
Plant Samples	5
Total Samples	209

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16067]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16067]	Kosmotoga olearia TBF 19.5.1 clone fosmid tbf19.5.1.d05, complete sequence	EU980631	38287	ENA	521045 tax ID

[Ref.: #16067]	GC-content	42.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29179]	GC-content	42.5 mol%

Availability in culture collections External links

[Ref.: #16067]

Culture collection no.

DSM 21960, ATCC BAA-1733, TBF 19.5.1

[Ref.: #86071]

SI-ID 396949

Literature:

Topic	Title	Authors	Journal	DOI	Year
Transcriptome	Integration of transcriptomic and proteomic analyses of cold shock response in Kosmotoga olearia, a typical thermophile with an incredible minimum growth temperature at 20 degrees C.	Li X, Li D, Ma S, Yang Y	Braz J Microbiol	10.1007/s42770-021-00662-5	2022	*
Genetics	Genome sequence of Kosmotoga olearia strain TBF 19.5.1, a thermophilic bacterium with a wide growth temperature range, isolated from the Troll B oil platform in the North Sea.	Swithers KS, DiPippo JL, Bruce DC, Detter C, Tapia R, Han S, Goodwin LA, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Mikhailova N, Land ML, Nesbo CL, Gogarten JP, Noll KM	J Bacteriol	10.1128/JB.05828-11	2011	*
Phylogeny	Kosmotoga olearia gen. nov., sp. nov., a thermophilic, anaerobic heterotroph isolated from an oil production fluid.	Dipippo JL, Nesbo CL, Dahle H, Doolittle WF, Birkland NK, Noll KM	Int J Syst Evol Microbiol	10.1099/ijs.0.008045-0	2009	*

References

#16067

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21960

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29179

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25603 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#86071

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396949.1 )

#25603

IJSEM 2991 2009 ( DOI 10.1099/ijs.0.008045-0 , PubMed 19643902 )

* These data were automatically processed and therefore are not curated

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