Name: Bifidobacterium globosum RU224
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1706

Type strain:

Species: Bifidobacterium globosum

Strain Designation: RU224

Culture col. no.: DSM 20092, ATCC 25865, JCM 5820, BCRC 14663, CCUG 34978, CCUG 39904, CGMCC 1.2203, KCTC 3234, LMG 10509, LMG 11569, NCFB 2245

Strain history: ATCC 25865 <-- V. Scardovi RU 224.

NCBI tax ID(s): 1690 (subspecies)

SI-ID 9637

LMG 10509, LMG 11569, ATCC 25865, CCUG 34978, DSM 20092, NCFB 2245, JCM 5820, CCRC 14663, NCIMB 702245, NCDO2245, KCTC 3234, AS 1.2203, CCUG 39904, CCM 7208, BCRC 14663, HAMBI 1376, HAMBI 563, CGMCC 1.2203

Special Collections

Other strains from Bifidobacterium globosum

Section

Bifidobacterium globosum RU224 is an anaerobe bacterium that was isolated from rumen.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium globosum**
	Full Scientific Name (LPSN)	Bifidobacterium globosum (ex Scardovi et al. 1969) Biavati et al. 1982

Synonym

Bifidobacterium pseudolongum subsp. globosum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %94

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8518]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #8518]

Culture medium growth

[Ref.: #8518]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8518]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8518]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8518]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.277
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #8518]	Murein short key	A21.02
[Ref.: #8518]	Murein types	A3ß L-Orn(L-Lys)-L-Ala₂_-₃

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8518]	14520	-	-	-	-	-	+	-	-	-	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8518]	Sample type/isolated from	rumen

[Ref.: #67770]	Sample type/isolated from	Rumen
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Organ

#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071834 (>99% sequence identity) for Bifidobacterium pseudolongum subclade from Microbeatlas

Aquatic Samples	870
Soil Samples	858
Animal Samples	81910
Plant Samples	351
Total Samples	83989

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8518]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium pseudolongum subsp. globosum gene for 16S ribosomal RNA, partial sequence, strain: JCM 5820	LC071834	1407	GenBank ENA	1690 tax ID
[Ref.: #20218]	Bifidobacterium globosum 16S ribosomal RNA	M58736	1488	GenBank ENA	1690 tax ID	*
[Ref.: #20218]	Bifidobacterium globosum ATCC25865 16S-23S intergenic spacer	U09524	548	GenBank ENA	1690 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudolongum subsp. globosum strain DSM 20092 16S ribosomal RNA gene, partial sequence	GQ487637	146	GenBank ENA	1690 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudocatenulatum gene for 16S rRNA, partial sequence, strain: JCM 5820	AB116329	480	GenBank ENA	28026 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudolongum subsp. globosum gene for 16S rRNA, partial sequence, strain: JCM 5820	AB116332	488	GenBank ENA	1690 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudolongum subsp. globosum gene for 16S rRNA, partial sequence, strain: JCM 5820	AB507138	693	GenBank ENA	1690 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudolongum subsp. globosum JCM 5820 gene for 16S rRNA, partial sequence	D86194	1528	GenBank ENA	1690 tax ID	*
[Ref.: #20218]	Bifidobacterium pseudolongum subsp. globosum strain KCTC 3234 16S ribosomal RNA gene, partial sequence	GU361828	1491	GenBank ENA	1690 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium pseudolongum subsp. globosum DSM 20092	GCA_000687595	contig	GenBank ENA	1410605 tax ID
[Ref.: #66792]	Bifidobacterium pseudolongum subsp. globosum DSM 20092	GCA_000771145	contig	GenBank ENA	1410605 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudolongum subsp. globosum LMG 11569	GCA_000741295	contig	GenBank ENA	1690 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudolongum subsp. globosum DSM 20092	1410605.4	wgs	PATRIC	1410605 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudolongum subsp. globosum DSM 20092	1410605.3	wgs	PATRIC	1410605 tax ID	*
[Ref.: #66792]	Bifidobacterium pseudolongum subsp. globosum DSM 20092 strain DSM20092	1410605.6	complete	PATRIC	1410605 tax ID	*

[Ref.: #8518]	GC-content	63.8 mol%
[Ref.: #67770]	GC-content	63.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium pseudolongum subsp. globosum DSM 20092 strain DSM20092 PATRIC: 1410605.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium pseudolongum subsp. globosum DSM 20092 DSM 20092 NCBI: GCA_002706665.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.009	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	82.501	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.586	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.277	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94	no

Availability in culture collections External links

[Ref.: #8518]

Culture collection no.

DSM 20092, ATCC 25865, JCM 5820, BCRC 14663, CCUG 34978, CCUG 39904, CGMCC 1.2203, KCTC 3234, LMG 10509, LMG 11569, NCFB 2245

[Ref.: #71353]

SI-ID 9637

References

#8518

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20092

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71353

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID9637.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium pseudolongum subsp. globosum DSM 20092 strain DSM20092

Bifidobacterium pseudolongum subsp. globosum DSM 20092 DSM 20092

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