Bifidobacterium globosum (DSM 20092, ATCC 25865, RU224)

Name: Bifidobacterium globosum (DSM 20092, ATCC 25865, RU224)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1706

Type strain

Strain Designation RU224

Culture col. no. DSM 20092 ATCC 25865 RU224 JCM 5820 BCRC 14663 7 more

NCBI tax ID(s) 1690

Special Collections DSMZ CCUG JCM KCTC

History <- V. Scardovi, RU224 ATCC 25865 <-- V. Scardovi RU 224.

Links

Bifidobacterium globosum RU224 is an anaerobe, mesophilic prokaryote that was isolated from rumen.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 9637

LMG 10509,LMG 11569,ATCC 25865,CCUG 34978,DSM 20092,NCFB 2245,JCM 5820,CCRC 14663,NCIMB 702245,NCDO2245,KCTC 3234,AS 1.2203,CCUG 39904,CCM 7208,BCRC 14663,HAMBI 1376,HAMBI 563,CGMCC 1.2203

@ref 20215

Last LPSN update 2026-02-09 11:18:10

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Bifidobacteriales

Family Bifidobacteriaceae

Genus Bifidobacterium

Species Bifidobacterium globosum

Full scientific name Bifidobacterium globosum (ex Scardovi et al. 1969) Biavati et al. 1982

Synonyms (1)

Bifidobacterium pseudolongum subsp. globosum

BacDive ID	Other strains from **Bifidobacterium globosum** (6)	Type strain
157634	B. globosum G1, DSM 28531
157635	B. globosum G 3, G3, DSM 28532
157636	B. globosum D 1, D1, DSM 28533
157637	B. globosum D 9, D9, DSM 28534
169209	B. globosum H3, WCA6-pet-01.03, DSM 105315
174365	B. globosum HUN015, AGR2145, DSM 115841

Morphology

Cell morphology

@ref	Motility	Confidence
125438		94

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8518	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8518	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

8518

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.277

Murein

@ref	Murein short key	Type
8518	A21.02	A3ß L-Orn(L-Lys)-L-Ala₂_-₃

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	+	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
8518	-	-	-	-	-	+	-	-	-	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Organ	#Rumen

Isolation

@ref	Sample type
8518	rumen
67770	Rumen

Taxonmaps

69479

Global distribution of 16S sequence LC071834 (>99% sequence identity) for Bifidobacterium pseudolongum subclade from Microbeatlas

Aquatic Samples	870
Soil Samples	858
Animal Samples	81910
Plant Samples	351
Total Samples	83989

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8518	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM270666v1 assembly for Bifidobacterium pseudolongum subsp. globosum DSM 20092	complete	GCA_002706665	1410605.6	2823497638	1410605	97.83
66792	Bifpse_sub.glo assembly for Bifidobacterium pseudolongum subsp. globosum LMG 11569	contig	GCA_000741295	1690.4	2597490251	1690	73.66
67770	ASM68759v1 assembly for Bifidobacterium pseudolongum subsp. globosum DSM 20092	contig	GCA_000687595	1410605.3	2558860115	1410605	71.27
66792	DSM-20092 assembly for Bifidobacterium pseudolongum subsp. globosum DSM 20092	contig	GCA_000771145	1410605.4	2690316232	1410605	66.52

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Bifidobacterium globosum 16S ribosomal RNA	M58736	1488	1690
20218	Bifidobacterium globosum ATCC25865 16S-23S intergenic spacer	U09524	548	1690
20218	Bifidobacterium pseudolongum subsp. globosum strain DSM 20092 16S ribosomal RNA gene, partial sequence	GQ487637	146	1690
20218	Bifidobacterium pseudocatenulatum gene for 16S rRNA, partial sequence, strain: JCM 5820	AB116329	480	28026
20218	Bifidobacterium pseudolongum subsp. globosum gene for 16S rRNA, partial sequence, strain: JCM 5820	AB116332	488	1690
20218	Bifidobacterium pseudolongum subsp. globosum gene for 16S rRNA, partial sequence, strain: JCM 5820	AB507138	693	1690
20218	Bifidobacterium pseudolongum subsp. globosum JCM 5820 gene for 16S rRNA, partial sequence	D86194	1528	1690
20218	Bifidobacterium pseudolongum subsp. globosum strain KCTC 3234 16S ribosomal RNA gene, partial sequence	GU361828	1491	1690
67770	Bifidobacterium pseudolongum subsp. globosum gene for 16S ribosomal RNA, partial sequence, strain: JCM 5820	LC071834	1407	1690

GC content

@ref	GC-content (mol%)	Method
8518	63.8
67770	63.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bifidobacterium pseudolongum subsp. globosum DSM 20092 strain DSM20092
PATRIC: 1410605.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	83.60	no
125439	motility	BacteriaNetⓘ	no	80.00	no
125439	gram_stain	BacteriaNetⓘ	positive	89.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	61.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bifidobacterium pseudolongum subsp. globosum DSM 20092 DSM 20092
NCBI: GCA_002706665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.01	no
125438	anaerobic	anaerobicⓘ	yes	82.50	yes
125438	aerobic	aerobicⓘ	no	93.59	yes
125438	spore-forming	spore-formingⓘ	no	90.28	no
125438	thermophilic	thermophileⓘ	no	94.00	yes
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Unveiling Genomic Diversity among Members of the Species Bifidobacterium pseudolongum, a Widely Distributed Gut Commensal of the Animal Kingdom.	Lugli GA, Duranti S, Albert K, Mancabelli L, Napoli S, Viappiani A, Anzalone R, Longhi G, Milani C, Turroni F, Alessandri G, Sela DA, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.03065-18	2019
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Enzymology	Detection of Bifidobacterium animalis subsp. lactis (Bb12) in the intestine after feeding of sows and their piglets.	Solano-Aguilar G, Dawson H, Restrepo M, Andrews K, Vinyard B, Urban JF.	Appl Environ Microbiol	10.1128/aem.00309-08	2008
	Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses.	Ventura M, Canchaya C, Zink R, Fitzgerald GF, van Sinderen D.	Appl Environ Microbiol	10.1128/aem.70.10.6197-6209.2004	2004

References

#8518	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20092
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bifidobacterium globosum (DSM 20092, ATCC 25865, RU224)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002706665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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