Name: Thermosipho affectus ik275mar
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17059

Type strain:

Species: Thermosipho affectus

Strain Designation: ik275mar

Culture col. no.: DSM 23112, VKM B-2574

Strain history: <- I. V. Kublanov, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; ik275mar <- O. A. Podosokorskaya {2009}

NCBI tax ID(s): 660294 (species)

SI-ID 404795

DSM 23112

Section

Thermosipho affectus ik275mar is an anaerobe, thermophilic bacterium that was isolated from deep-sea vent .

anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Fervidobacteriaceae*
	Genus	*Thermosipho*
	Species	**Thermosipho affectus**
	Full Scientific Name (LPSN)	Thermosipho affectus Podosokorskaya et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16715]

Culture medium

THERMOSIPHO AFFECTUS MEDIUM (DSMZ Medium 1299)

[Ref.: #16715]

Culture medium growth

[Ref.: #16715]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16715]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16715]			growth	70 °C

[Ref.: #16715]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16715]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16715]	Sample type/isolated from	deep-sea vent (in situ-enrichment with sterile wood chips)
[Ref.: #16715]	Geographic location (country and/or sea, region)	Mid-Atlantic Ridge, Rainbow hydrothermal vent field (36° 13' N 33° 54' W)
[Ref.: #16715]	Geographic location	36.2167°/-33.9000°
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16715]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16715]	CAXO385.rev CAXO Teleopsis dalmanni Early pupal eye-antennal disc EST library Teleopsis dalmanni cDNA clone CAXO385 3', mRNA sequence	GO292553	670	ENA	139649 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermosipho affectus ik275mar	GCA_001990485	contig	GenBank	660294 tax ID	*

[Ref.: #16715]

GC-content

27 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermosipho affectus ik275mar NCBI: GCA_001990485.1
[Ref.: #69480]	flagellated	no	89.46	no
[Ref.: #69480]	gram-positive	no	93.181	no
[Ref.: #69480]	anaerobic	yes	99.714	yes
[Ref.: #69480]	aerobic	no	99.089	yes
[Ref.: #69480]	halophile	no	91.829	no
[Ref.: #69480]	spore-forming	no	93.643	no
[Ref.: #69480]	glucose-util	yes	88.201	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	yes	56.136	no
[Ref.: #69480]	motile	yes	92.015	no

Availability in culture collections External links

[Ref.: #16715]

Culture collection no.

DSM 23112, VKM B-2574

[Ref.: #86059]

SI-ID 404795

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermosipho affectus sp. nov., a thermophilic, anaerobic, cellulolytic bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent.	Podosokorskaya OA, Kublanov IV, Reysenbach AL, Kolganova TV, Bonch-Osmolovskaya EA	Int J Syst Evol Microbiol	10.1099/ijs.0.025197-0	2010	*

References

#16715

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23112

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86059

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404795.1 )

* These data were automatically processed and therefore are not curated

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