Name: Thermosipho melanesiensis BI429
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17055

Type strain:

Species: Thermosipho melanesiensis

Strain Designation: BI429

Culture col. no.: DSM 12029, CIP 104789

Strain history: <- CIP <- E. Antoine, BI429

NCBI tax ID(s): 46541 (species)

SI-ID 49226

DSM 12029, CIP 104789

Section

Thermosipho melanesiensis BI429 is an anaerobe, thermophilic bacterium that was isolated from gills of deep-sea hydrothermal mussel Bathymodiolus brevior, 1832 - 1887 m water depth.

anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Fervidobacteriaceae*
	Genus	*Thermosipho*
	Species	**Thermosipho melanesiensis**
	Full Scientific Name (LPSN)	Thermosipho melanesiensis Antoine et al. 1997

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4582]

Culture medium

THERMOSIPHO MELANESIENSIS MEDIUM (DSMZ Medium 343a)

[Ref.: #4582]

Culture medium growth

[Ref.: #4582]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4582]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4582]			growth	70 °C

[Ref.: #4582]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4582]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4582]	Sample type/isolated from	gills of deep-sea hydrothermal mussel Bathymodiolus brevior, 1832 - 1887 m water depth
[Ref.: #4582]	Host species	Bathymodiolus brevior
[Ref.: #4582]	Geographic location (country and/or sea, region)	Southwest Pacific Ocean, Lau Basin
[Ref.: #4582]	Country	Tonga
[Ref.: #4582]	Country ISO 3 Code	TON
[Ref.: #4582]	Continent	Australia and Oceania
[Ref.: #4582]	Geographic location	-22.5333°/-176.7170°
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Organ	#Vascular system

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z70248 (>99% sequence identity) for Thermosipho melanesiensis subclade from Microbeatlas

Aquatic Samples	30
Soil Samples	1
Animal Samples
Plant Samples	2
Total Samples	33

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4582]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4582]	Thermosipho melanesiensis 16S ribosomal RNA	Z70248	1512	ENA	391009 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermosipho melanesiensis BI429	GCA_000016905	complete	GenBank	391009 tax ID	*
[Ref.: #66792]	Thermosipho melanesiensis BI429	391009.9	complete	PATRIC	391009 tax ID	*
[Ref.: #66792]	Thermosipho melanesiensis BI429	640753057	complete	JGI IMG/M	391009 tax ID	*

[Ref.: #4582]

GC-content

30.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermosipho melanesiensis BI429 BI429 NCBI: GCA_000016905.1
[Ref.: #69480]	motile	yes	91.061	no
[Ref.: #69480]	flagellated	no	88.332	no
[Ref.: #69480]	gram-positive	no	93.876	no
[Ref.: #69480]	anaerobic	yes	99.542	yes
[Ref.: #69480]	halophile	no	92.754	no
[Ref.: #69480]	spore-forming	no	88.759	no
[Ref.: #69480]	glucose-util	yes	85.996	no
[Ref.: #69480]	aerobic	no	98.772	yes
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-ferment	no	51.762	no

Availability in culture collections External links

[Ref.: #4582]

Culture collection no.

DSM 12029, CIP 104789

[Ref.: #86055]

SI-ID 49226

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermosipho melanesiensis sp. nov., a new thermophilic anaerobic bacterium belonging to the order Thermotogales, isolated from deep-sea hydrothermal vents in the southwestern Pacific Ocean.	Antoine E, Cilia V, Meunier JR, Guezennec J, Lesongeur F, Barbier G	Int J Syst Bacteriol	10.1099/00207713-47-4-1118	1997	*

References

#4582

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12029

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86055

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49226.1 )

* These data were automatically processed and therefore are not curated

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Thermosipho melanesiensis BI429 BI429

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