Name: Pyrobaculum arsenaticum PZ6*
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17028

Type strain:

Species: Pyrobaculum arsenaticum

Strain Designation: PZ6*

Culture col. no.: DSM 13514, JCM 11321, ATCC 700994

Strain history: DSM 13514 <-- K. O. Stetter and R. Huber PZ6*.

NCBI tax ID(s): 340102 (strain), 121277 (species)

SI-ID 49480

DSM 13514, JCM 11321, ATCC 700994

Section

Pyrobaculum arsenaticum PZ6Pyrobaculum arsenaticum is an anaerobe, spore-forming, hyperthermophilic archaeon that was isolated from hot sediment.

Gram-negative
spore-forming
anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Thermoproteales*
	Family	*Thermoproteaceae*
	Genus	*Pyrobaculum*
	Species	**Pyrobaculum arsenaticum**
	Full Scientific Name (LPSN)	Pyrobaculum arsenaticum Huber et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.807

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5070]

Culture medium

PYROBACULUM MEDIUM (DSMZ Medium 390)

[Ref.: #5070]

Culture medium growth

[Ref.: #5070]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5070]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5070]			growth	95 °C
[Ref.: #67770]			growth	95 °C

[Ref.: #5070]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5070]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.028

[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5070]	Sample type/isolated from	hot sediment
[Ref.: #5070]	Geographic location (country and/or sea, region)	Naples, Pisciarelli Solfatara
[Ref.: #5070]	Country	Italy
[Ref.: #5070]	Country ISO 3 Code	ITA
[Ref.: #5070]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hot spring at Pisciarelli Solfatara
[Ref.: #67770]	Geographic location (country and/or sea, region)	Naples
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sediment
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5070]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5070]	Pyrobaculum arsenaticum 16S rRNA gene, strain PZ6	AJ277124	1418	ENA	121277 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pyrobaculum arsenaticum DSM 13514	GCA_000016385	complete	GenBank	340102 tax ID	*
[Ref.: #66792]	Pyrobaculum arsenaticum PZ6, DSM 13514	640427135	complete	JGI IMG/M	340102 tax ID	*
[Ref.: #66792]	Pyrobaculum arsenaticum DSM 13514	340102.8	complete	PATRIC	340102 tax ID	*

[Ref.: #5070]	GC-content	58.3 mol%
[Ref.: #67770]	GC-content	58.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pyrobaculum arsenaticum DSM 13514 DSM 13514 NCBI: GCA_000016385.1
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pyrobaculum arsenaticum DSM 13514 DSM 13514 NCBI: GCA_000016385.1
[Ref.: #69480]	motile	no	77.866	no
[Ref.: #69480]	flagellated	no	96.412	no
[Ref.: #69480]	gram-positive	no	97.218	no
[Ref.: #69480]	anaerobic	yes	96.362	yes
[Ref.: #69480]	halophile	no	76.998	no
[Ref.: #69480]	spore-forming	no	96.82	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	74.451	no
[Ref.: #69480]	aerobic	no	90.026	no
[Ref.: #69480]	glucose-ferment	no	78.444	no

Availability in culture collections External links

[Ref.: #5070]

Culture collection no.

DSM 13514, JCM 11321, ATCC 700994

[Ref.: #86029]

SI-ID 49480

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Respiration of arsenate and selenate by hyperthermophilic archaea.	Huber R, Sacher M, Vollmann A, Huber H, Rose D	Syst Appl Microbiol	10.1016/S0723-2020(00)80058-2	2000	*

References

#5070

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13514

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86029

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49480.1 )

* These data were automatically processed and therefore are not curated

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Pyrobaculum arsenaticum DSM 13514 DSM 13514

Pyrobaculum arsenaticum DSM 13514 DSM 13514

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