Name: Pyrobaculum aerophilum IM2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17026

Type strain:

Species: Pyrobaculum aerophilum

Strain Designation: IM2

Culture col. no.: DSM 7523, JCM 9630, ATCC 51768, NBRC 100827

Strain history: DSM 7523 <-- K. O. Stetter and P. Völkl IM2.

NCBI tax ID(s): 13773 (species)

SI-ID 43167

ATCC 51768, DSM 7523, JCM 9630, NBRC 100827, CIP 104966

Section

Pyrobaculum aerophilum IM2 is an anaerobe, hyperthermophilic archaeon that was isolated from hot marine water.

anaerobe
hyperthermophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Thermoproteales*
	Family	*Thermoproteaceae*
	Genus	*Pyrobaculum*
	Species	**Pyrobaculum aerophilum**
	Full Scientific Name (LPSN)	Pyrobaculum aerophilum Völkl et al. 1996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3200]

Culture medium

PYROBACULUM (BS) MEDIUM (DSMZ Medium 611)

[Ref.: #3200]

Culture medium growth

[Ref.: #3200]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3200]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3200]			growth	98 °C
[Ref.: #67770]			growth	95 °C

[Ref.: #3200]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3200]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3200]	Sample type/isolated from	hot marine water
[Ref.: #3200]	Geographic location (country and/or sea, region)	Ischia, Maronti Beach
[Ref.: #3200]	Country	Italy
[Ref.: #3200]	Country ISO 3 Code	ITA
[Ref.: #3200]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Boiling marine water hole at the Maronti Beach
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ischia
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3200]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pyrobaculum aerophilum 16S ribosomal RNA gene	L07510	2210	ENA	178306 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pyrobaculum aerophilum str. IM2	GCA_000007225	complete	GenBank	178306 tax ID	*
[Ref.: #66792]	Pyrobaculum aerophilum IM2	638154513	complete	JGI IMG/M	178306 tax ID	*
[Ref.: #66792]	Pyrobaculum aerophilum str. IM2	178306.9	complete	PATRIC	178306 tax ID	*

[Ref.: #3200]	GC-content	52.0 mol%
[Ref.: #67770]	GC-content	52 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pyrobaculum aerophilum str. IM2 IM2 NCBI: GCA_000007225.1
[Ref.: #69480]	motile	no	78.299	no
[Ref.: #69480]	flagellated	no	95.481	no
[Ref.: #69480]	gram-positive	no	97.896	no
[Ref.: #69480]	anaerobic	yes	92.929	yes
[Ref.: #69480]	halophile	no	79.537	no
[Ref.: #69480]	spore-forming	no	95.523	no
[Ref.: #69480]	glucose-util	yes	79.097	no
[Ref.: #69480]	aerobic	no	87.848	yes
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	no	79.944	no

Availability in culture collections External links

[Ref.: #3200]

Culture collection no.

DSM 7523, JCM 9630, ATCC 51768, NBRC 100827

[Ref.: #86027]

SI-ID 43167

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pyrobaculum aerophilum sp. nov., a novel nitrate-reducing hyperthermophilic archaeum.	Volkl P, Huber R, Drobner E, Rachel R, Burggraf S, Trincone A, Stetter KO	Appl Environ Microbiol	10.1128/aem.59.9.2918-2926.1993	1993	*

References

#3200

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7523

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86027

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43167.1 )

* These data were automatically processed and therefore are not curated

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Pyrobaculum aerophilum str. IM2 IM2

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