Vulcanisaeta souniana (DSM 14430, JCM 11219, IC-059)

Name: Vulcanisaeta souniana (DSM 14430, JCM 11219, IC-059)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17022

Type strain

Strain Designation IC-059

Culture col. no. DSM 14430 JCM 11219 IC-059 NBRC 100879

NCBI tax ID(s) 1293586 164452

Special Collections DSMZ JCM

History DSMZ <- T. Itoh, JCM; IC-059 <- T. Itoh; {1994} JCM <-- T. Itoh IC-059.

Links

Vulcanisaeta souniana IC-059 is an anaerobe archaeon that was isolated from hot spring.

anaerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 101061

DSM 14430,JCM 11219,NBRC 100879

@ref 20215

Last LPSN update 2026-05-29 08:28:55

Domain Archaea

Phylum Thermoproteota

Class Thermoprotei

Order Thermoproteales

Family Thermoproteaceae

Genus Vulcanisaeta

Species Vulcanisaeta souniana

Full scientific name Vulcanisaeta souniana Itoh et al. 2002

BacDive ID	Other strains from **Vulcanisaeta souniana** (1)	Type strain
161490	V. souniana JCM 14466

Morphology

Cell morphology

@ref	Motility	Confidence
125439		96.215

Colony morphology

5350

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5350	SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a)		Medium recipe at MediaDive	Name: SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a) Composition: Sulfur 10.0 g/l (NH4)2SO4 1.3 g/l Na2S x 9 H2O 0.5 g/l Yeast extract 0.5 g/l KH2PO4 0.28 g/l MgSO4 x 7 H2O 0.25 g/l CaCl2 x 2 H2O 0.07 g/l FeCl3 x 6 H2O 0.02 g/l Na2B4O7 x 10 H2O 0.0045 g/l MnCl2 x 4 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.00022 g/l CuCl2 x 2 H2O 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l VOSO4 x 2 H2O 3e-05 g/l CoSO4 x 7 H2O 1e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5350	positive	growth	85
67770	positive	growth	85

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
5350	anaerobe
125439	anaerobe	98.411

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5350	hot spring	Kanagawa, Sounzan-onsen	Japan	JPN	Asia
67770	Hot spring water	Sounzan, Kanagawa	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB063645 (>99% sequence identity) for Vulcanisaeta souniana from Microbeatlas

Aquatic Samples	10
Soil Samples	0
Animal Samples	0
Plant Samples	0
Total Samples	10

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5350	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM2600077v1 assembly for Vulcanisaeta souniana JCM 11219	complete	GCA_026000775	1293586.9	8118260255	1293586	94.82
66792	ASM1464655v1 assembly for Vulcanisaeta souniana JCM 11219	contig	GCA_014646555	1293586.8		1293586	67.66
67770	ASM131602v1 assembly for Vulcanisaeta souniana JCM 11219	contig	GCA_001316025	1293586.5	2681813013	1293586	32.37

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Vulcanisaeta souniana gene for 16S rRNA, partial sequence, strain:IC-059	AB063645	1477		1293586

GC content

@ref	GC-content (mol%)	Method
5350	44.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2600077v1 assembly for Vulcanisaeta souniana JCM 11219
NCBI: GCA_026000775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.41	no
125439	gram_stain	BacteriaNetⓘ	positive	79.47	no
125439	motility	BacteriaNetⓘ	no	96.22	no
125439	spore_formation	BacteriaNetⓘ	no	72.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Complete Genome Sequence of Vulcanisaeta souniana Strain IC-059, a Hyperthermophilic Archaeon Isolated from Hot Spring Water in Japan.	Kato S, Itoh T, Wu L, Ma J, Ohkuma M.	Microbiol Resour Announc	10.1128/mra.01080-22	2023
Phylogeny	Vulcanisaeta thermophila sp. nov., a hyperthermophilic and acidophilic crenarchaeon isolated from solfataric soil.	Yim KJ, Cha IT, Rhee JK, Song HS, Hyun DW, Lee HW, Kim D, Kim KN, Nam YD, Seo MJ, Bae JW, Roh SW	Int J Syst Evol Microbiol	10.1099/ijs.0.065862-0	2014
Phylogeny	Vulcanisaeta distributa gen. nov., sp. nov., and Vulcanisaeta souniana sp. nov., novel hyperthermophilic, rod-shaped crenarchaeotes isolated from hot springs in Japan.	Itoh T, Suzuki K, Nakase T	Int J Syst Evol Microbiol	10.1099/00207713-52-4-1097	2002

References

#5350	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14430
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vulcanisaeta souniana (DSM 14430, JCM 11219, IC-059)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_026000775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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