Sinomicrobium kalidii (KCTC 92136, CGMCC 1.19025, HD2P242)

Name: Sinomicrobium kalidii (KCTC 92136, CGMCC 1.19025, HD2P242)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 170184

Type strain

Strain Designation HD2P242

Culture col. no. KCTC 92136 CGMCC 1.19025 HD2P242

NCBI tax ID(s) 2900738

Special Collections KCTC

Links

Sinomicrobium kalidii HD2P242 is a bacterium of the family Flavobacteriaceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26222

KCTC-92136

@ref 20215

Last LPSN update 2026-05-29 08:46:47

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Sinomicrobium

Species Sinomicrobium kalidii

Full scientific name Sinomicrobium kalidii Li et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	94.841
125438	negative	96.311
125438		95.5

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	93.821

Spore formation

@ref	Spore formation	Confidence
125439		97.322
125438		90

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2118382v1 assembly for Sinomicrobium kalidii HD2P242	complete	GCA_021183825	2900738.6	8063507978	2900738	98.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Sinomicrobium kalidii 16S ribosomal RNA gene, partial sequence	OL742713	1498		2900738

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2118382v1 assembly for Sinomicrobium kalidii HD2P242
NCBI: GCA_021183825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.32	no
125439	motility	BacteriaNetⓘ	no	69.96	no
125439	gram_stain	BacteriaNetⓘ	negative	94.84	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.82	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sinomicrobium kalidii HD2P242
NCBI: GCA_021183825.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.31	no
125438	anaerobic	anaerobicⓘ	no	96.30	no
125438	aerobic	aerobicⓘ	yes	82.36	no
125438	spore-forming	spore-formingⓘ	no	90.00	no
125438	thermophilic	thermophileⓘ	no	98.43	no
125438	flagellated	motile2+ⓘ	no	95.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sinomicrobium kalidii sp. nov., an indole-3-acetic acid-producing endophyte from a shoot of halophyte Kalidium cuspidatum.	Li LF, Xu L, Li WH, Sun JQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005452	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Sinomicrobium kalidii (KCTC 92136, CGMCC 1.19025, HD2P242)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_021183825

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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