Name: Actinoallomurus purpureus TTN02-30
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 17012

Type strain:

Species: Actinoallomurus purpureus

Strain Designation: TTN02-30

Culture col. no.: DSM 45449, KCTC 19541, NBRC 103687

Strain history: <- T Tamura, NBRC, Japan

NCBI tax ID(s): 478114 (species)

SI-ID 402895

DSM 45449

Special Collections

Section

Actinoallomurus purpureus TTN02-30 is an aerobe, spore-forming, rod-shaped bacterium that was isolated from forest soil.

rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinoallomurus*
	Species	**Actinoallomurus purpureus**
	Full Scientific Name (LPSN)	Actinoallomurus purpureus Tamura et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #29127]	Cell length	1.1 µm

[Ref.: #29127]	Cell width	0.75 µm

[Ref.: #29127]	Cell shape	rod-shaped

[Ref.: #29127]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16838]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #16838]

Culture medium growth

[Ref.: #16838]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16838]

Culture medium composition

expand / minimize

[Ref.: #16838]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #16838]

Culture medium growth

[Ref.: #16838]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16838]

Culture medium composition

expand / minimize

[Ref.: #16838]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16838]

Culture medium growth

[Ref.: #16838]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16838]

Culture medium composition

expand / minimize

[Ref.: #16838]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #16838]

Culture medium growth

[Ref.: #16838]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16838]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16838]	growth	28 °C
[Ref.: #29127]	growth	15-30 °C
[Ref.: #29127]	optimum	22.5 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29127]			optimum	6
[Ref.: #29127]			growth	05-07

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29127]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29127]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29127]		NaCl		growth	0-5	%
[Ref.: #29127]		NaCl		optimum	2.5	%

[Ref.: #29127]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29127]	cellobiose ChEBI	+	carbon source
[Ref.: #29127]	esculin ChEBI	+	hydrolysis
[Ref.: #29127]	fructose ChEBI	+	carbon source
[Ref.: #29127]	fucose ChEBI	+	carbon source
[Ref.: #29127]	galactose ChEBI	+	carbon source
[Ref.: #29127]	glucosamine ChEBI	+	carbon source
[Ref.: #29127]	glucose ChEBI	+	carbon source
[Ref.: #29127]	glycerol ChEBI	+	carbon source
[Ref.: #29127]	glycogen ChEBI	+	carbon source
[Ref.: #29127]	lactose ChEBI	+	carbon source
[Ref.: #29127]	maltose ChEBI	+	carbon source
[Ref.: #29127]	mannose ChEBI	+	carbon source
[Ref.: #29127]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29127]	salicin ChEBI	+	carbon source
[Ref.: #29127]	sucrose ChEBI	+	carbon source
[Ref.: #29127]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29127]	catalase	+	1.11.1.6
[Ref.: #29127]	gelatinase	+
[Ref.: #29127]	pyrazinamidase	+	3.5.1.B15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16838]	Sample type/isolated from	forest soil
[Ref.: #16838]	Geographic location (country and/or sea, region)	Yoro Valley, Chiba
[Ref.: #16838]	Country	Japan
[Ref.: #16838]	Country ISO 3 Code	JPN
[Ref.: #16838]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From forest soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yoro Valley, Chiba
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB364588 (>99% sequence identity) for Actinoallomurus purpureus from Microbeatlas

Aquatic Samples	5
Soil Samples	90
Animal Samples	1
Plant Samples	22
Total Samples	118

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16838]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16838]	Actinoallomurus purpureus gene for 16S rRNA, partial sequence, strain: TTN02-30 (= NBRC 103687)	AB364588	1454	GenBank ENA	478114 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoallomurus purpureus KCTC 19541	GCA_024055795	contig	GenBank ENA	478114 tax ID	*

[Ref.: #16838]

GC-content

70 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoallomurus purpureus KCTC 19541 NCBI: GCA_024055795.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.824	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.284	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.824	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.428	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.798	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	no

Availability in culture collections External links

[Ref.: #16838]

Culture collection no.

DSM 45449, KCTC 19541, NBRC 103687

[Ref.: #86013]

SI-ID 402895

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoallomurus acanthiterrae sp. nov., an actinomycete isolated from rhizosphere soil of the mangrove plant Acanthus ilicifolius.	Tang YL, Lin HP, Xie QY, Li L, Peng F, Deng Z, Hong K	Int J Syst Evol Microbiol	10.1099/ijs.0.043380-0	2012	*
Phylogeny	Transfer of Actinomadura spadix Nonomura and Ohara 1971 to Actinoallomurus spadix gen. nov., comb. nov., and description of Actinoallomurus amamiensis sp. nov., Actinoallomurus caesius sp. nov., Actinoallomurus coprocola sp. nov., Actinoallomurus fulvus sp. nov., Actinoallomurus iriomotensis sp. nov., Actinoallomurus luridus sp. nov., Actinoallomurus purpureus sp. nov. and Actinoallomurus yoronensis sp. nov.	Tamura T, Ishida Y, Nozawa Y, Otoguro M, Suzuki K	Int J Syst Evol Microbiol	10.1099/ijs.0.006858-0	2009	*

References

#16838

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45449

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29127

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25553 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#86013

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402895.1 )

#25553

IJSEM 1867 2009 ( DOI 10.1099/ijs.0.006858-0 , PubMed 19567582 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinoallomurus purpureus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Actinoallomurus purpureus KCTC 19541

Change proposal

Change proposal