Yersinia rochesterensis (IP 35638, CIP 111843, DSM 110739)

Name: Yersinia rochesterensis (IP 35638, CIP 111843, DSM 110739)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 170080

Type strain

Culture col. no. IP 35638 CIP 111843 DSM 110739

NCBI tax ID(s) 1604335

Special Collections CIP DSMZ

History CIP <- 2019, A-S. Le Guern, Inst. Pasteur, Paris, France: strain IP35638 <- Lixbio Lab. <- A.-S. Le Guern, Institut Pasteur, Paris, France; CIP 111843 {2020} <- LBM LXBIO, Rodez, Paris; IP35638 {2014}

Links

Yersinia rochesterensis DSM 110739 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Human, Faeces.

Gram-negative motile rod-shaped Bacteria

Name and taxonomic classification

SI-ID 412967

DSM 110739,ATCC BAA-2637,CIP 111843

@ref 20215

Last LPSN update 2026-02-09 11:41:10

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia rochesterensis

Full scientific name Yersinia rochesterensis (Cunningham et al. 2019) Nguyen et al. 2021

Synonyms (2)

Yersinia occitanica
Yersinia kristensenii subsp. rochesterensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
121378	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
121378	CIP Medium 72	Medium recipe at CIP
126100	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
126100	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)	Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
126100	positive	growth	28

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
20215	+	-	-	+	+/-	-	+	-	+	-	-	+	+	+/-	+	-	-	-	+	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date	Latitude	Longitude
121378	Human, Faeces	2014-01-31	Rodez	France	FRA	Europe	2014-01-31
126100	human stool		Occitanie, Rodez	France	FRA	Europe		44.3637	2.5545 44.3637/2.5545

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121378	2	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#68368	Automatically annotated from API 20E .
#121378	Collection of Institut Pasteur ; Curators of the CIP; CIP 111843
#126100	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 110739
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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