Name: Actinomadura meridiana DLS-45
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17002

Type strain:

Species: Actinomadura meridiana

Strain Designation: DLS-45, 5DSM 45252

Culture col. no.: DSM 45252, KCTC 19558, JCM 17440

Strain history: <- SD Lee, Cheju Univ.

NCBI tax ID(s): 559626 (species)

SI-ID 406574

DSM 45252

Section

Actinomadura meridiana DLS-45 is an aerobe, spore-forming, mesophilic bacterium that was isolated from rock soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura meridiana**
	Full Scientific Name (LPSN)	Actinomadura meridiana Lee 2012

Information on morphological and physiological properties Morphology

[Ref.: #30114]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #30114]	Motility	no

[Ref.: #30114]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15917]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #15917]

Culture medium growth

[Ref.: #15917]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15917]

Culture medium composition

expand / minimize

[Ref.: #15917]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #15917]

Culture medium growth

[Ref.: #15917]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15917]

Culture medium composition

expand / minimize

[Ref.: #15917]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #15917]

Culture medium growth

[Ref.: #15917]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15917]

Culture medium composition

expand / minimize

[Ref.: #15917]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #15917]

Culture medium growth

[Ref.: #15917]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15917]

Culture medium composition

expand / minimize

[Ref.: #15917]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #15917]

Culture medium growth

[Ref.: #15917]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15917]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15917]	growth	28 °C
[Ref.: #30114]	growth	20-30 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #15917]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30114]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #30114]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30114]		NaCl		growth	<1	%

[Ref.: #30114]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₆), MK-9(H₈)
[Ref.: #67771]	Observation	quinones: MK-9(H6), MK-9(H8)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30114]	cellobiose ChEBI	+	carbon source
[Ref.: #30114]	dextrin ChEBI	+	carbon source
[Ref.: #30114]	esculin ChEBI	+	hydrolysis
[Ref.: #30114]	glycerol ChEBI	+	carbon source
[Ref.: #30114]	rhamnose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity
[Ref.: #30114]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15917]	Sample type/isolated from	rock soil
[Ref.: #15917]	Geographic location (country and/or sea, region)	Jeju, Darangshi Oreum
[Ref.: #15917]	Country	Republic of Korea
[Ref.: #15917]	Country ISO 3 Code	KOR
[Ref.: #15917]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mountain soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From rock soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15917]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15917]	Actinomadura meridiana partial 16S rRNA gene, type strain DLS-45T	FN646663	1433	ENA	559626 tax ID

[Ref.: #15917]	GC-content	68.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30114]	GC-content	68.9 mol%

Availability in culture collections External links

[Ref.: #15917]

Culture collection no.

DSM 45252, KCTC 19558, JCM 17440

[Ref.: #86004]

SI-ID 406574

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura meridiana sp. nov., isolated from mountain soil.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.029546-0	2011	*

References

#15917

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45252

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30114

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26469 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#86004

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406574.1 )

#26469

IJSEM 217 2012 ( DOI 10.1099/ijs.0.029546-0 , PubMed 21398504 )

* These data were automatically processed and therefore are not curated

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