Lysobacter selenitireducens (JCM 34786, 13A, GDMCC 1.2722)

Name: Lysobacter selenitireducens (JCM 34786, 13A, GDMCC 1.2722)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 170015

Type strain

Strain Designation 13A

Culture col. no. JCM 34786 13A GDMCC 1.2722

NCBI tax ID(s) 2872639

Special Collections JCM

Links

Lysobacter selenitireducens 13A is a bacterium of the family Lysobacteraceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28291

JCM 34786

@ref 20215

Last LPSN update 2026-05-29 08:46:44

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Lysobacter

Species Lysobacter selenitireducens

Full scientific name Lysobacter selenitireducens Mao et al. 2022

Synonyms (1)

Novilysobacter selenitireducens

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.23
125439	negative	91.118

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.24

Spore formation

@ref	Spore formation	Confidence
125438		91.376
125439		98.017

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2002689v1 assembly for Novilysobacter selenitireducens 13A	contig	GCA_020026895	2872639.10	8048016222	2872639	55.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Lysobacter selenitireducens strain 13A 16S ribosomal RNA gene, partial sequence	MZ643208	1467		2872639

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2002689v1 assembly for Novilysobacter selenitireducens 13A
NCBI: GCA_020026895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.02	no
125439	motility	BacteriaNetⓘ	yes	67.18	no
125439	gram_stain	BacteriaNetⓘ	negative	91.12	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.24	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lysobacter selenitireducens 13A
NCBI: GCA_020026895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.23	no
125438	anaerobic	anaerobicⓘ	no	98.50	no
125438	aerobic	aerobicⓘ	yes	84.18	no
125438	spore-forming	spore-formingⓘ	no	91.38	no
125438	thermophilic	thermophileⓘ	no	89.90	no
125438	flagellated	motile2+ⓘ	no	53.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter selenitireducens sp. nov., isolated from river sediment.	Mao S, Li S, Guo B, Mu W, Hou X, Liu H, Wei S, Liu A, Kong L, Chen Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005550	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lysobacter selenitireducens (JCM 34786, 13A, GDMCC 1.2722)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_020026895

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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