Lysobacter avium (KCTC 62676, H23M41, JCM 33223)

Name: Lysobacter avium (KCTC 62676, H23M41, JCM 33223)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 170012

Type strain

Strain Designation H23M41

Culture col. no. KCTC 62676 H23M41 JCM 33223

NCBI tax ID(s) 2781023

Special Collections JCM KCTC

Links

Lysobacter avium H23M41 is a bacterium of the family Lysobacteraceae.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 28186

JCM 33223,KCTC 62676

@ref 20215

Last LPSN update 2026-05-29 08:46:44

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Lysobacter

Species Lysobacter avium

Full scientific name Lysobacter avium Lee et al. 2022

Synonyms (1)

Novilysobacter avium

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.296
125438	negative	98.994

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.449

Spore formation

@ref	Spore formation	Confidence
125439		99.261
125438		90.428

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1520974v1 assembly for Novilysobacter avium H23M41	complete	GCA_015209745	2781023.3	2931100239	2781023	89.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Lysobacter avium strain H23M41 16S ribosomal RNA gene, partial sequence	MT764977	1479		2781023

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1520974v1 assembly for Novilysobacter avium H23M41
BV-BRC: 2781023.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.26	no
125439	motility	BacteriaNetⓘ	yes	62.39	no
125439	gram_stain	BacteriaNetⓘ	negative	95.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.45	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lysobacter avium H23M41
NCBI: GCA_015209745.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.99	no
125438	anaerobic	anaerobicⓘ	no	97.52	no
125438	aerobic	aerobicⓘ	yes	81.71	no
125438	spore-forming	spore-formingⓘ	no	90.43	no
125438	thermophilic	thermophileⓘ	no	94.28	no
125438	flagellated	motile2+ⓘ	no	58.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork.	Lee SY, Kim PS, Sung H, Hyun DW, Bae JW	J Microbiol	10.1007/s12275-022-1647-5	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lysobacter avium (KCTC 62676, H23M41, JCM 33223)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_015209745

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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