Actinomadura scrupuli (DSM 45225, KCTC 19488, R-Ac121)

Name: Actinomadura scrupuli (DSM 45225, KCTC 19488, R-Ac121)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 17001

Type strain

Strain Designation R-Ac121

Culture col. no. DSM 45225 KCTC 19488 R-Ac121

NCBI tax ID(s) 559629

Special Collections DSMZ KCTC Literature strains

History <- S. D. Lee, Cheju National University; R-Ac 121 <- SD Lee, Cheju Univ.

Links

Actinomadura scrupuli R-Ac121 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from stone.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398267

KCTC 19488,DSM 45225

@ref 20215

Last LPSN update 2026-02-09 11:22:06

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura scrupuli

Full scientific name Actinomadura scrupuli Lee and Lee 2010

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
29637	positive	rod-shaped
67771	positive

Pigmentation

29637

Productionyes

Multimedia

@ref:	15804
multimedia content:	DSM_45225.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45225.jpg
caption:	Medium 553 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
15804	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
15804	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15804	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15804	positive	growth	28
29637	positive	growth	20-30
29637	positive	optimum	20-30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
29637	positive	optimum	7
29637	positive	growth	6.1-8.1

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29637	aerobe
67771	aerobe

Spore formation

29637

Spore formationno

Observation

29637

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29637	30089 ChEBI	acetate	+	carbon source
29637	22599 ChEBI	arabinose	+	carbon source
29637	17057 ChEBI	cellobiose	+	carbon source
29637	4853 ChEBI	esculin	+	hydrolysis
29637	28757 ChEBI	fructose	+	carbon source
29637	28260 ChEBI	galactose	+	carbon source
29637	17234 ChEBI	glucose	+	carbon source
29637	17754 ChEBI	glycerol	+	carbon source
29637	17716 ChEBI	lactose	+	carbon source
29637	25115 ChEBI	malate	+	carbon source
29637	28053 ChEBI	melibiose	+	carbon source
29637	17632 ChEBI	nitrate	+	reduction
29637	26546 ChEBI	rhamnose	+	carbon source
29637	15963 ChEBI	ribitol	+	carbon source
29637	30911 ChEBI	sorbitol	+	carbon source
29637	30031 ChEBI	succinate	+	carbon source
29637	17992 ChEBI	sucrose	+	carbon source
29637	27082 ChEBI	trehalose	+	carbon source
29637	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity
29637	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15804	stone	Jeju	Republic of Korea	KOR	Asia
67771	From stone	Jeju	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15804	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM5097178v1 assembly for Actinomadura scrupuli KCTC 19488	scaffold	GCA_050971785	559629	51.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15804	Actinomadura scrupuli R-Ac121 partial 16S rRNA gene, strain R-Ac121	FM210339	1402		559629

GC content

15804

GC-content (mol%)71.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura scrupuli sp. nov., isolated from rock.	Lee DW, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.017608-0	2009

References

#15804	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45225
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26026	IJSEM 2647 2010 ( DOI 10.1099/ijs.0.017608-0 , PubMed 20042751 )
#29637	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26026
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura scrupuli (DSM 45225, KCTC 19488, R-Ac121)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_050971785

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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