Name: Actinomadura scrupuli R-Ac121
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17001

Type strain:

Species: Actinomadura scrupuli

Strain Designation: R-Ac121, 5DSM 45225

Culture col. no.: DSM 45225, KCTC 19488

Strain history: <- SD Lee, Cheju Univ.

NCBI tax ID(s): 559629 (species)

SI-ID 398267

DSM 45225

Section

Actinomadura scrupuli R-Ac121 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from stone.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura scrupuli**
	Full Scientific Name (LPSN)	Actinomadura scrupuli Lee and Lee 2010

Information on morphological and physiological properties Morphology

[Ref.: #29637]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #29637]	Cell shape	rod-shaped

[Ref.: #29637]	Motility	no

[Ref.: #29637]

Pigment production

yes

Multimedia content

[Ref.: #15804]

Caption:

Medium 553 28°C

[Ref.: #15804]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15804]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #15804]

Culture medium growth

[Ref.: #15804]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15804]

Culture medium composition

expand / minimize

[Ref.: #15804]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #15804]

Culture medium growth

[Ref.: #15804]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15804]

Culture medium composition

expand / minimize

[Ref.: #15804]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #15804]

Culture medium growth

[Ref.: #15804]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15804]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15804]	growth	28 °C
[Ref.: #29637]	growth	20-30 °C
[Ref.: #29637]	optimum	20-30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #15804]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29637]			optimum	7
[Ref.: #29637]			growth	6.1-8.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29637]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29637]

Ability of spore formation

[Ref.: #29637]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29637]	acetate ChEBI	+	carbon source
[Ref.: #29637]	arabinose ChEBI	+	carbon source
[Ref.: #29637]	cellobiose ChEBI	+	carbon source
[Ref.: #29637]	esculin ChEBI	+	hydrolysis
[Ref.: #29637]	fructose ChEBI	+	carbon source
[Ref.: #29637]	galactose ChEBI	+	carbon source
[Ref.: #29637]	glucose ChEBI	+	carbon source
[Ref.: #29637]	glycerol ChEBI	+	carbon source
[Ref.: #29637]	lactose ChEBI	+	carbon source
[Ref.: #29637]	malate ChEBI	+	carbon source
[Ref.: #29637]	melibiose ChEBI	+	carbon source
[Ref.: #29637]	nitrate ChEBI	+	reduction
[Ref.: #29637]	rhamnose ChEBI	+	carbon source
[Ref.: #29637]	ribitol ChEBI	+	carbon source
[Ref.: #29637]	sorbitol ChEBI	+	carbon source
[Ref.: #29637]	succinate ChEBI	+	carbon source
[Ref.: #29637]	sucrose ChEBI	+	carbon source
[Ref.: #29637]	trehalose ChEBI	+	carbon source
[Ref.: #29637]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity
[Ref.: #29637]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15804]	Sample type/isolated from	stone
[Ref.: #15804]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #15804]	Country	Republic of Korea
[Ref.: #15804]	Country ISO 3 Code	KOR
[Ref.: #15804]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From stone
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15804]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15804]	Actinomadura scrupuli R-Ac121 partial 16S rRNA gene, strain R-Ac121	FM210339	1402	ENA	559629 tax ID

[Ref.: #15804]

GC-content

71.8 mol%

Availability in culture collections External links

[Ref.: #15804]

Culture collection no.

DSM 45225, KCTC 19488

[Ref.: #86003]

SI-ID 398267

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura scrupuli sp. nov., isolated from rock.	Lee DW, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.017608-0	2009	*

References

#15804

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45225

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29637

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26026 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#86003

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398267.1 )

#26026

IJSEM 2647 2010 ( DOI 10.1099/ijs.0.017608-0 , PubMed 20042751 )

* These data were automatically processed and therefore are not curated

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