Helicobacter turcicus (DSM 112556, LMG 32335, Faydin-H70)

Name: Helicobacter turcicus (DSM 112556, LMG 32335, Faydin-H70)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 170005

Type strain

Strain Designation Faydin-H70

Culture col. no. DSM 112556 LMG 32335 Faydin-H70

NCBI tax ID(s) 2867412

Special Collections DSMZ

History DSMZ <- F. Aydin, Erciyes University, Kayseri, Turkey; Faydin-H70

Links

Helicobacter turcicus Faydin-H70 is a bacterium that was isolated from Droppings of Anatolian Ground Squirrel .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 366626

LMG 32335,DSM 112556

@ref 20215

Last LPSN update 2026-05-29 08:46:44

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Helicobacteraceae

Genus Helicobacter

Species Helicobacter turcicus

Full scientific name Helicobacter turcicus Aydin et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.977
125439	negative	96.646

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
124818	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
124818	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	90.097

Spore formation

@ref	Spore formation	Confidence
125438		97.562
125439		99.847

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
124818	Droppings of Anatolian Ground Squirrel (Spermophilus xanthoprymnus)	Kayseri	Turkey	TUR	Asia	38.7055	35.5391 38.7055/35.5391

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1971168v1 assembly for Helicobacter turcicus Faydin-H70	contig	GCA_019711685	2867412.3	2867412	72.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Helicobacter turcicus strain Faydin-H70 16S ribosomal RNA gene, partial sequence	MZ781213	1310		2867412

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1971168v1 assembly for Helicobacter turcicus Faydin-H70
NCBI: GCA_019711685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.85	no
125439	motility	BacteriaNetⓘ	no	75.45	no
125439	gram_stain	BacteriaNetⓘ	negative	96.65	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Helicobacter turcicus Faydin-H70
NCBI: GCA_019711685.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.98	no
125438	anaerobic	anaerobicⓘ	no	69.45	no
125438	aerobic	aerobicⓘ	no	82.37	no
125438	spore-forming	spore-formingⓘ	no	97.56	no
125438	thermophilic	thermophileⓘ	no	79.93	no
125438	flagellated	motile2+ⓘ	yes	70.86	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Helicobacter turcicus sp. nov., a catalase-negative new member of the Helicobacter genus, isolated from Anatolian Ground Squirrel (Spermophilus xanthoprymnus) in Turkey.	Aydin F, Karakaya E, Kayman T, Abay S, Saticioglu IB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005338	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124818	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 112556
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Helicobacter turcicus (DSM 112556, LMG 32335, Faydin-H70)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_019711685

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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