Polynucleobacter kasalickyi (JCM 32564, VK13, DSM 103488)

Name: Polynucleobacter kasalickyi (JCM 32564, VK13, DSM 103488)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169983

Type strain

Strain Designation VK13

Culture col. no. JCM 32564 VK13 DSM 103488

NCBI tax ID(s) 1938817

Special Collections JCM DSMZ

History <- M. Hahn; <- V. Kasalický, University of Innsbruck, Research Institute for Limnology, Austria; VK13

Links

Polynucleobacter kasalickyi VK13 is a prokaryote that was isolated from freshwater.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 405931

JCM 32564,DSM 103488

@ref 20215

Last LPSN update 2026-02-09 11:41:09

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Polynucleobacter

Species Polynucleobacter kasalickyi

Full scientific name Polynucleobacter kasalickyi Hahn et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98.819
125439	negative	93.4

Multimedia

@ref:	124485
multimedia content:	DSM_103488.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_103488.jpg
caption:	cells of DSM 103488 on medium 830 at 28 °C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
124485	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
124485	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.1

Spore formation

@ref	Spore formation	Confidence
125439		97.6
125438		94.974

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
124485	freshwater	Lake Jirick 48.618939 °N, 14.672530 °E	Czech Republic	CZE	Europe	48.6188	14.6725 48.6188/14.6725

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2708742530 annotated assembly for Polynucleobacter kasalickyi VK13	contig	GCA_900176405	1938817.3	2708742530	1938817	59.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Polynucleobacter kasalickyi strain VK13 16S ribosomal RNA gene, partial sequence	OK037149	1365		1938817

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Polynucleobacter kasalickyi VK13
NCBI: GCA_900176405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.60	no
125439	motility	BacteriaNetⓘ	yes	52.60	no
125439	gram_stain	BacteriaNetⓘ	negative	93.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Polynucleobacter kasalickyi VK13
NCBI: GCA_900176405.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.82	no
125438	anaerobic	anaerobicⓘ	no	94.13	no
125438	aerobic	aerobicⓘ	yes	82.50	no
125438	spore-forming	spore-formingⓘ	no	94.97	no
125438	thermophilic	thermophileⓘ	no	91.06	no
125438	flagellated	motile2+ⓘ	no	77.40	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124485	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103488
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us