Polynucleobacter bastaniensis (AP-Basta-1000A-D1, DSM 107039, JCM 32933)

Name: Polynucleobacter bastaniensis (AP-Basta-1000A-D1, DSM 107039, JCM 32933)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169977

Type strain

Strain Designation AP-Basta-1000A-D1

Culture col. no. AP-Basta-1000A-D1 DSM 107039 JCM 32933

NCBI tax ID(s) 2081039

Special Collections JCM DSMZ

Links

Polynucleobacter bastaniensis AP-Basta-1000A-D1 is a prokaryote of the family Burkholderiaceae.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 391063

JCM 32933

@ref 20215

Last LPSN update 2025-12-16 10:10:42

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Polynucleobacter

Species Polynucleobacter bastaniensis

Full scientific name Polynucleobacter bastaniensis Hahn et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	94.828
125439	negative	99.7

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	94.1

Spore formation

@ref	Spore formation	Confidence
125439		99.5
125438		90.271

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1888220v1 assembly for Polynucleobacter bastaniensis AP-Basta-1000A-D1	contig	GCA_018882205	2081039.3	2767802584	2081039	76.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20215	Polynucleobacter bastaniensis strain AP-Basta-1000A-D1 16S ribosomal RNA gene, partial sequence	OK037141	1367		2081039

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Polynucleobacter bastaniensis AP-Basta-1000A-D1
NCBI: GCA_018882205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	77.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Polynucleobacter bastaniensis AP-Basta-1000A-D1
NCBI: GCA_018882205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.83	no
125438	anaerobic	anaerobicⓘ	no	92.17	no
125438	aerobic	aerobicⓘ	yes	86.45	no
125438	spore-forming	spore-formingⓘ	no	90.27	no
125438	thermophilic	thermophileⓘ	no	92.74	no
125438	flagellated	motile2+ⓘ	no	53.22	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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