Actinomadura chokoriensis (DSM 45346, JCM 13932, MTCC 8056)

Name: Actinomadura chokoriensis (DSM 45346, JCM 13932, MTCC 8056)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16997

Type strain

Strain Designation 3-45-a(11)

Culture col. no. DSM 45346 JCM 13932 MTCC 8056 3-45-a(11)

NCBI tax ID(s) 454156

Special Collections DSMZ JCM Literature strains

History <- JCM/RIKEN <- T. Kudo <- I. Ara; 3-45-a(11) T. Kudo <-- I. Ara 3-45-a(11).

Links

Actinomadura chokoriensis 3-45-a is an aerobe, spore-forming, mesophilic prokaryote that was isolated from sandy soil.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403763

JCM 13932,DSM 45346

@ref 20215

Last LPSN update 2025-12-16 09:50:59

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura chokoriensis

Full scientific name Actinomadura chokoriensis Ara et al. 2008

Morphology

Cell morphology

32467

Gram stainpositive

Pigmentation

32467

Productionno

Multimedia

@ref:	16340
multimedia content:	DSM_45346.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45346.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16340	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16340	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
16340	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
16340	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16340	positive	growth	28	mesophilic
32467	positive	growth	20-45
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32467	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

32467

Oxygen toleranceaerobe

Spore formation

32467

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32467	NaCl	positive	growth	7 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32467	22599 ChEBI	arabinose	+	carbon source
32467	17057 ChEBI	cellobiose	+	carbon source
32467	28757 ChEBI	fructose	+	carbon source
32467	17754 ChEBI	glycerol	+	carbon source
32467	29864 ChEBI	mannitol	+	carbon source
32467	17992 ChEBI	sucrose	+	carbon source
32467	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16340	sandy soil	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia
67770	Sandy soil	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16340	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4146369v1 assembly for Actinomadura chokoriensis DSM 45346	scaffold	GCA_041463695	454156	51.28
124043	ASM3952947v1 assembly for Actinomadura chokoriensis JCM 13932	scaffold	GCA_039529475	454156	49.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16340	Actinomadura chokoriensis gene for 16S rRNA, partial sequence	AB331730	1501		454156
124043	Actinomadura chokoriensis strain DSM 45346 16S ribosomal RNA gene, partial sequence.	OR140748	1450		454156

GC content

@ref	GC-content (mol%)	Method
16340	72.43
67770	72.43	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura monticuli sp. nov., isolated from Darangshi Oreum (a volcanic cone), and the reclassification of Actinomadura glauciflava Lu et al. 2003 as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhenskaya et al. 1975 (Approved Lists 1980).	Lee SD, Yang HL, Kim IS.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006609	2024
Phylogeny	Actinomadura darangshiensis sp. nov., isolated from a volcanic cone.	Lee SD, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.000099	2015
Phylogeny	Actinomadura geliboluensis sp. nov., isolated from soil.	Sazak A, Camas M, Sproer C, Klenk HP, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.036145-0	2011
Phylogeny	Actinomadura bangladeshensis sp. nov. and Actinomadura chokoriensis sp. nov.	Ara I, Matsumoto A, Bakir MA, Kudo T, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65533-0	2008

References

#16340	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45346
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28688	IJSEM 1653 2008 ( DOI 10.1099/ijs.0.65533-0 , PubMed 18599711 )
#32467	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28688
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Actinomadura chokoriensis (DSM 45346, JCM 13932, MTCC 8056)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_041463695

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

Help

Social Media