Actinomadura bangladeshensis (DSM 45347, JCM 13933, MTCC 8057)

Name: Actinomadura bangladeshensis (DSM 45347, JCM 13933, MTCC 8057)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16996

Type strain

Strain Designation 3-46-b(3)

Culture col. no. DSM 45347 JCM 13933 MTCC 8057 3-46-b(3)

NCBI tax ID(s) 453573

Special Collections DSMZ JCM Literature strains

History <- JCM/RIKEN <- T. Kudo <- I. Ara; 3-46-b(3) T. Kudo <-- I. Ara 3-46-b(3).

Links

Actinomadura bangladeshensis 3-46-b is an aerobe, spore-forming, mesophilic prokaryote that was isolated from sandy soil.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403450

JCM 13933,DSM 45347

@ref 20215

Last LPSN update 2026-02-09 11:22:06

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura bangladeshensis

Full scientific name Actinomadura bangladeshensis Ara et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Confidence
32467	positive
125439	positive	99.9
125439		91.2
125438		90.6

Pigmentation

32467

Productionno

Multimedia

@ref:	16341
multimedia content:	DSM_45347.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45347.jpg
caption:	Medium 554 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16341	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
16341	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16341	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
16341	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
16341	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16341	positive	growth	28	mesophilic
32467	positive	growth	20-45
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32467	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32467	aerobe
125438	aerobe	90.082
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
32467
125439		91.2

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32467	NaCl	positive	growth	4 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32467	22599 ChEBI	arabinose	+	carbon source
32467	17057 ChEBI	cellobiose	+	carbon source
32467	28757 ChEBI	fructose	+	carbon source
32467	17754 ChEBI	glycerol	+	carbon source
32467	29864 ChEBI	mannitol	+	carbon source
32467	17992 ChEBI	sucrose	+	carbon source
32467	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16341	sandy soil	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia
67770	Sandy soil	Chokoria, Cox's Bazar	Bangladesh	BGD	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16341	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3952949v1 assembly for Actinomadura bangladeshensis JCM 13933	scaffold	GCA_039529495			453573	35.76
67770	ASM434833v1 assembly for Actinomadura bangladeshensis DSM 45347	contig	GCA_004348335	453573.3	2866640805	453573

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16341	Actinomadura bangladeshensis gene for 16S rRNA, partial sequence	AB331652	1497		453573

GC content

@ref	GC-content (mol%)	Method
16341	70.27
67770	70.27	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinomadura bangladeshensis DSM 45347
NCBI: GCA_004348335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	91.20	no
125439	motility	BacteriaNetⓘ	no	91.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinomadura bangladeshensis strain DSM 45347
PATRIC: 453573.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.62	no
125438	anaerobic	anaerobicⓘ	no	88.76	yes
125438	spore-forming	spore-formingⓘ	yes	85.03	yes
125438	aerobic	aerobicⓘ	yes	90.08	yes
125438	thermophilic	thermophileⓘ	no	93.41	yes
125438	flagellated	motile2+ⓘ	no	90.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura monticuli sp. nov., isolated from Darangshi Oreum (a volcanic cone), and the reclassification of Actinomadura glauciflava Lu et al. 2003 as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhenskaya et al. 1975 (Approved Lists 1980).	Lee SD, Yang HL, Kim IS.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006609	2024
Phylogeny	Description of the bacterial RNA polymerase inhibitor GE23077-producer Actinomadura sp. NRRL B-65521(T) as Actinomadura lepetitiana sp. nov.	Dalmastri C, Gastaldo L, Berini F, Marinelli F, Marcone GL	Int J Syst Evol Microbiol	10.1099/ijsem.0.004348	2020
Phylogeny	Actinomadura darangshiensis sp. nov., isolated from a volcanic cone.	Lee SD, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.000099	2015
Phylogeny	Actinomadura xylanilytica sp. nov., an actinomycete isolated from soil.	Zucchi TD, Kim BY, Bonda ANV, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.042325-0	2012
Phylogeny	Actinomadura geliboluensis sp. nov., isolated from soil.	Sazak A, Camas M, Sproer C, Klenk HP, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.036145-0	2011
Phylogeny	Actinomadura bangladeshensis sp. nov. and Actinomadura chokoriensis sp. nov.	Ara I, Matsumoto A, Bakir MA, Kudo T, Omura S, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65533-0	2008

References

#16341	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45347
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28688	IJSEM 1653 2008 ( DOI 10.1099/ijs.0.65533-0 , PubMed 18599711 )
#32467	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28688
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura bangladeshensis (DSM 45347, JCM 13933, MTCC 8057)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039529495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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