Actinomadura alba (DSM 45045, CCTCC AA 206005, CIP 109812)

Name: Actinomadura alba (DSM 45045, CCTCC AA 206005, CIP 109812)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16995

Type strain

Culture col. no. DSM 45045 CCTCC AA 206005 CIP 109812 JCM 14906 NBRC 103884 1 more

NCBI tax ID(s) 406431

Special Collections DSMZ JCM CIP Wink compendium Literature strains

History DSMZ <- S.-K. Tang, YIM <- Y.-X. Wang JCM <-- DSM 45045 <-- Y.-X. Wang et al. YIM 45681. CIP <- 2008, DSMZ <- S.K. Tang, YIM <- Y.X. Wang, Yunnan Univ., Yunnan, China: strain YIM 45681

Links

Actinomadura alba DSM 45045 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 293691

DSM 45045,NBRC 103884,JCM 14906,CIP 109812

@ref 20215

Last LPSN update 2026-05-29 08:28:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura alba

Full scientific name Actinomadura alba Wang et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
32041	positive
125439	positive		92.795
116176	positive	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
19903	Beige	10-14 days	ISP 2
19903	Beige	10-14 days	ISP 3
19903	Beige	10-14 days	ISP 4
19903	Cream	10-14 days	ISP 5
19903	Cream	10-14 days	ISP 6
19903	Cream	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19903		ISP 2
19903		ISP 3
19903		ISP 4
19903		ISP 5
19903		ISP 6
19903		ISP 7

Pigmentation

32041

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12272	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12272	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
19903	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19903	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19903	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19903	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19903	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19903	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
37850	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
116176	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
12272	positive	growth	28
32041	positive	optimum	28
37850	positive	growth	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
32041	positive	optimum	7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32041	aerobe
116176	obligate aerobe
125439	obligate aerobe	99.448

Spore formation

32041

Spore formationyes

Observation

@ref	Observation
32041	aggregates in chains
67770	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19903	22599 ChEBI	arabinose	-
19903	62968 ChEBI	cellulose	-
32041	4853 ChEBI	esculin	+	hydrolysis
19903	28757 ChEBI	fructose	+
32041	28757 ChEBI	fructose	+	carbon source
32041	5291 ChEBI	gelatin	+	carbon source
19903	17234 ChEBI	glucose	+
32041	18403 ChEBI	L-arabitol	+	carbon source
32041	17716 ChEBI	lactose	+	carbon source
19903	29864 ChEBI	mannitol	-
19903	17268 ChEBI	myo-inositol	-
32041	17632 ChEBI	nitrate	+	reduction
116176	17632 ChEBI	nitrate	+	reduction
116176	16301 ChEBI	nitrite	-	reduction
19903	16634 ChEBI	raffinose	-
19903	26546 ChEBI	rhamnose	-
32041	15963 ChEBI	ribitol	+	carbon source
32041	33942 ChEBI	ribose	+	carbon source
19903	17992 ChEBI	sucrose	-
32041	17992 ChEBI	sucrose	+	carbon source
32041	27082 ChEBI	trehalose	+	carbon source
19903	18222 ChEBI	xylose	-
32041	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116176	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32041	catalase	+	1.11.1.6
116176	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32041	gelatinase	+
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
116176	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
32041	urease	+	3.5.1.5
116176	urease	-	3.5.1.5

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19903	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
116176	-	+	+	+	+	+	+	-	-	+	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12272	soil	Yunnan Province	China	CHN	Asia
67770	Soil in a suburb of Kunming	Yunnan Province, south-west China	China	CHN	Asia
116176	Environment, Soil	Yunnan	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ985164 (>99% sequence identity) for Actinomadura alba subclade from Microbeatlas

Aquatic Samples	38
Soil Samples	966
Animal Samples	12
Plant Samples	36
Total Samples	1052

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12272	1	Risk group (German classification) According to TRBA 466
19903	1	Risk group (German classification) According to TRBA 466
116176	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953028v1 assembly for Actinomadura alba JCM 14906	scaffold	GCA_039530285	406431	41.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12272	Actinomadura alba strain YIM 45681 16S ribosomal RNA gene, partial sequence	DQ985164	1457		406431

GC content

12272

GC-content (mol%)66.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953028v1 assembly for Actinomadura alba JCM 14906
NCBI: GCA_039530285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.45	no
125439	gram_stain	BacteriaNetⓘ	positive	92.80	no
125439	motility	BacteriaNetⓘ	no	72.50	no
125439	spore_formation	BacteriaNetⓘ	no	87.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation.	Wang Y, Lin S, Li J, Jia X, Hu M, Cai Y, Cheng P, Li M, Chen Y, Lin W, Wang H, Wu Z.	Front Plant Sci	10.3389/fpls.2023.1324184	2023
Phylogeny	Biosynthetic potential of phylogenetically unique endophytic actinomycetes from tropical plants.	Janso JE, Carter GT.	Appl Environ Microbiol	10.1128/aem.02959-09	2010
Phylogeny	Actinomadura scrupuli sp. nov., isolated from rock.	Lee DW, Lee SD.	Int J Syst Evol Microbiol	10.1099/ijs.0.017608-0	2010
Phylogeny	Actinomadura alba sp. nov., isolated from soil in Yunnan, China.	Wang YX, Zhi XY, Chen HH, Zhang YQ, Tang SK, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64864-0	2007

References

#12272	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45045
#19903	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28291	IJSEM 1735 2007 ( DOI 10.1099/ijs.0.64864-0 , PubMed 17684247 )
#32041	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28291
#37850	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116176	Collection of Institut Pasteur ; Curators of the CIP; CIP 109812
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Actinomadura alba (DSM 45045, CCTCC AA 206005, CIP 109812)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039530285

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media