Name: Actinomadura alba DSM 45045
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16995

Type strain:

Species: Actinomadura alba

Culture col. no.: DSM 45045, CCTCC AA 206005, CIP 109812, JCM 14906, NBRC 103884, YIM 45681

Strain history: CIP <- 2008, DSMZ <- S.K. Tang, YIM <- Y.X. Wang, Yunnan Univ., Yunnan, China: strain YIM 45681

NCBI tax ID(s): 406431 (species)

SI-ID 293691

DSM 45045, NBRC 103884, JCM 14906, CIP 109812

Special Collections

Section

When using BacDive for research please cite our paper

Actinomadura alba DSM 45045 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura alba**
	Full Scientific Name (LPSN)	Actinomadura alba Wang et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32041]	Gram stain	positive
[Ref.: #116176]	Gram stain	positive

[Ref.: #116176]	Cell shape	rod-shaped

[Ref.: #116176]	Motility	no

[Ref.: #19903]	Colony color	Beige
[Ref.: #19903]	Incubation period	10-14 days
[Ref.: #19903]	Cultivation medium used	ISP 2

[Ref.: #19903]	Colony color	Beige
[Ref.: #19903]	Incubation period	10-14 days
[Ref.: #19903]	Cultivation medium used	ISP 3

[Ref.: #19903]	Colony color	Beige
[Ref.: #19903]	Incubation period	10-14 days
[Ref.: #19903]	Cultivation medium used	ISP 4

[Ref.: #19903]	Colony color	Cream
[Ref.: #19903]	Incubation period	10-14 days
[Ref.: #19903]	Cultivation medium used	ISP 5

[Ref.: #19903]	Colony color	Cream
[Ref.: #19903]	Incubation period	10-14 days
[Ref.: #19903]	Cultivation medium used	ISP 6

[Ref.: #19903]	Colony color	Cream
[Ref.: #19903]	Incubation period	10-14 days
[Ref.: #19903]	Cultivation medium used	ISP 7

[Ref.: #32041]

Pigment production

[Ref.: #19903]	Multicellular complex forming ability	no
[Ref.: #19903]	Medium Name (multicellularity)	ISP 2

[Ref.: #19903]	Multicellular complex forming ability	no
[Ref.: #19903]	Medium Name (multicellularity)	ISP 3

[Ref.: #19903]	Multicellular complex forming ability	no
[Ref.: #19903]	Medium Name (multicellularity)	ISP 4

[Ref.: #19903]	Multicellular complex forming ability	no
[Ref.: #19903]	Medium Name (multicellularity)	ISP 5

[Ref.: #19903]	Multicellular complex forming ability	no
[Ref.: #19903]	Medium Name (multicellularity)	ISP 6

[Ref.: #19903]	Multicellular complex forming ability	no
[Ref.: #19903]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12272]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12272]

Culture medium growth

[Ref.: #12272]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12272]

Culture medium composition

expand / minimize

[Ref.: #12272]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #12272]

Culture medium growth

[Ref.: #12272]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19903]

Culture medium

ISP 2

[Ref.: #19903]

Culture medium growth

[Ref.: #19903]

Culture medium composition

expand / minimize

[Ref.: #19903]

Culture medium

ISP 3

[Ref.: #19903]

Culture medium growth

[Ref.: #19903]

Culture medium composition

expand / minimize

[Ref.: #19903]

Culture medium

ISP 4

[Ref.: #19903]

Culture medium growth

[Ref.: #19903]

Culture medium composition

expand / minimize

[Ref.: #19903]

Culture medium

ISP 5

[Ref.: #19903]

Culture medium growth

[Ref.: #19903]

Culture medium composition

expand / minimize

[Ref.: #19903]

Culture medium

ISP 6

[Ref.: #19903]

Culture medium growth

[Ref.: #19903]

Culture medium composition

expand / minimize

[Ref.: #19903]

Culture medium

ISP 7

[Ref.: #19903]

Culture medium growth

[Ref.: #19903]

Culture medium composition

expand / minimize

[Ref.: #37850]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #37850]

Culture medium growth

[Ref.: #37850]

Culture medium composition

expand / minimize

[Ref.: #116176]

Culture medium

CIP Medium 57

[Ref.: #116176]

Culture medium growth

[Ref.: #116176]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #12272]	growth	28 °C
[Ref.: #32041]	optimum	28 °C
[Ref.: #37850]	growth	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32041]			optimum	7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32041]	Oxygen tolerance	aerobe
[Ref.: #116176]	Oxygen tolerance	obligate aerobe

[Ref.: #32041]

Ability of spore formation

yes

[Ref.: #32041]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19903]	arabinose ChEBI	-
[Ref.: #19903]	cellulose ChEBI	-
[Ref.: #32041]	esculin ChEBI	+	hydrolysis
[Ref.: #19903]	fructose ChEBI	+
[Ref.: #32041]	fructose ChEBI	+	carbon source
[Ref.: #32041]	gelatin ChEBI	+	carbon source
[Ref.: #19903]	glucose ChEBI	+
[Ref.: #32041]	L-arabitol ChEBI	+	carbon source
[Ref.: #32041]	lactose ChEBI	+	carbon source
[Ref.: #19903]	mannitol ChEBI	-
[Ref.: #19903]	myo-inositol ChEBI	-
[Ref.: #32041]	nitrate ChEBI	+	reduction
[Ref.: #116176]	nitrate ChEBI	+	reduction
[Ref.: #116176]	nitrite ChEBI	-	reduction
[Ref.: #19903]	raffinose ChEBI	-
[Ref.: #19903]	rhamnose ChEBI	-
[Ref.: #32041]	ribitol ChEBI	+	carbon source
[Ref.: #32041]	ribose ChEBI	+	carbon source
[Ref.: #19903]	sucrose ChEBI	-
[Ref.: #32041]	sucrose ChEBI	+	carbon source
[Ref.: #32041]	trehalose ChEBI	+	carbon source
[Ref.: #19903]	xylose ChEBI	-
[Ref.: #32041]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116176]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32041]	catalase	+	1.11.1.6
[Ref.: #116176]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32041]	gelatinase	+
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #116176]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #32041]	urease	+	3.5.1.5
[Ref.: #116176]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19903]	715	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #116176]	12127	-	+	+	+	+	+	+	-	-	+	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12272]	Sample type/isolated from	soil
[Ref.: #12272]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #12272]	Country	China
[Ref.: #12272]	Country ISO 3 Code	CHN
[Ref.: #12272]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil in a suburb of Kunming
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #116176]	Sample type/isolated from	Environment, Soil
[Ref.: #116176]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #116176]	Country	China
[Ref.: #116176]	Country ISO 3 Code	CHN
[Ref.: #116176]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ985164 (>99% sequence identity) for Actinomadura alba subclade from Microbeatlas

Aquatic Samples	38
Soil Samples	966
Animal Samples	12
Plant Samples	36
Total Samples	1052

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12272]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19903]	Biosafety level	1	Risk group (German classification)
[Ref.: #116176]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12272]	Actinomadura alba strain YIM 45681 16S ribosomal RNA gene, partial sequence	DQ985164	1457	GenBank ENA	406431 tax ID

[Ref.: #12272]

GC-content

66.5 mol%

Availability in culture collections External links

[Ref.: #12272]

Culture collection no.

DSM 45045, CCTCC AA 206005, CIP 109812, JCM 14906, NBRC 103884, YIM 45681

[Ref.: #85997]

SI-ID 293691

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura alba sp. nov., isolated from soil in Yunnan, China.	Wang YX, Zhi XY, Chen HH, Zhang YQ, Tang SK, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64864-0	2007	*

References

#12272

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45045

#19903

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32041

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28291 (see below)

#37850 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#85997

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID293691.1 )

#116176 Collection of Institut Pasteur ; Curators of the CIP; CIP 109812

#28291

IJSEM 1735 2007 ( DOI 10.1099/ijs.0.64864-0 , PubMed 17684247 )

* These data were automatically processed and therefore are not curated

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