Name: Actinomadura hallensis H647-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16993

Type strain:

Species: Actinomadura hallensis

Strain Designation: H647-1

Culture col. no.: DSM 45043, IMSNU 50760, KCCM 42245, NRRL B-24436, JCM 13882, DSM 44987, NBRC 102110

Strain history: IMSNU 50760 <-- S. D. Lee H647-1.

NCBI tax ID(s): 337895 (species)

SI-ID 265619

NRRL B-24436, DSM 44987, JCM 13882, DSM 45043, NBRC 102110

Section

Actinomadura hallensis H647-1 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil of Mt. Halla.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura hallensis**
	Full Scientific Name (LPSN)	Actinomadura hallensis Lee and Jeong 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12270]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #12270]

Culture medium growth

[Ref.: #12270]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12270]

Culture medium composition

expand / minimize

[Ref.: #12270]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #12270]

Culture medium growth

[Ref.: #12270]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12270]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12270]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #12270]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12270]	Sample type/isolated from	soil of Mt. Halla
[Ref.: #12270]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #12270]	Country	Republic of Korea
[Ref.: #12270]	Country ISO 3 Code	KOR
[Ref.: #12270]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Mt. Halla, Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12270]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Actinomadura hallensis strain H647-1 16S ribosomal RNA gene, partial sequence	DQ076484	1528	ENA	337895 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura hallensis DSM 45043	GCA_006716765	contig	GenBank	337895 tax ID
[Ref.: #66792]	Actinomadura hallensis strain DSM 45043	337895.3	wgs	PATRIC	337895 tax ID	*
[Ref.: #66792]	Actinomadura hallensis DSM 45043	2818991321	draft	JGI IMG/M	337895 tax ID	*

[Ref.: #67770]

GC-content

67.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomadura hallensis strain DSM 45043 PATRIC: 337895.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomadura hallensis strain DSM 45043 PATRIC: 337895.3
[Ref.: #69480]	gram-positive	yes	89.95	no
[Ref.: #69480]	anaerobic	no	97.948	no
[Ref.: #69480]	halophile	no	78.148	no
[Ref.: #69480]	spore-forming	yes	88.833	no
[Ref.: #69480]	glucose-util	yes	88.207	no
[Ref.: #69480]	motile	no	91.949	no
[Ref.: #69480]	flagellated	no	98.211	no
[Ref.: #69480]	thermophile	no	89.645	yes
[Ref.: #69480]	aerobic	yes	84.541	no
[Ref.: #69480]	glucose-ferment	no	92.727	no

Availability in culture collections External links

[Ref.: #12270]

Culture collection no.

DSM 45043, IMSNU 50760, KCCM 42245, NRRL B-24436, JCM 13882, DSM 44987, NBRC 102110

[Ref.: #85995]

SI-ID 265619

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura adrarensis sp. nov., an actinobacterium isolated from Saharan soil.	Lahoum A, Bouras N, Verheecke C, Mathieu F, Schumann P, Sproer C, Klenk HP, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijsem.0.001114	2016	*
Phylogeny	Actinomadura hallensis sp. nov., a novel actinomycete isolated from Mt. Halla in Korea.	Lee SD, Jeong HS	Int J Syst Evol Microbiol	10.1099/ijs.0.63943-0	2006	*

References

#12270

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45043

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85995

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265619.1 )

* These data were automatically processed and therefore are not curated

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Actinomadura hallensis strain DSM 45043

Actinomadura hallensis strain DSM 45043

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