Micromonospora okii (TBRC 15747, TP-A0468, NBRC 110461)

Name: Micromonospora okii (TBRC 15747, TP-A0468, NBRC 110461)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 169826

Type strain

Strain Designation TP-A0468

Culture col. no. TBRC 15747 TP-A0468 NBRC 110461

NCBI tax ID(s) 1182970

Links

Micromonospora okii TP-A0468 is a prokaryote of the family Micromonosporaceae.

Name and taxonomic classification

SI-ID 27438

TBRC15747,NBRC 110461

@ref 20215

Last LPSN update 2025-12-16 10:10:40

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora okii

Full scientific name Micromonospora okii Komaki et al. 2022

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.9
125439		92.2
125438		90

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.285
125439	obligate aerobe	99.7

Spore formation

@ref	Spore formation	Confidence
125438		92.406
125439		97.1

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	BV-BRC accession	NCBI tax ID	Score
66792	Micromonospora sp. TP-A0468	contig	1182970.4	1182970	66.74
66792	ASM2088479v1 assembly for Micromonospora okii TP-A0468	scaffold	1182970.3	1182970	56.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora sp. TP-A0468
PATRIC: 1182970.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	motility	BacteriaNetⓘ	no	92.20	no
125439	spore_formation	BacteriaNetⓘ	yes	97.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora sp. TP-A0468
PATRIC: 1182970.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.98	no
125438	anaerobic	anaerobicⓘ	no	96.38	no
125438	spore-forming	spore-formingⓘ	yes	92.41	no
125438	aerobic	aerobicⓘ	yes	90.29	no
125438	thermophilic	thermophileⓘ	no	94.00	no
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	In Silico Analysis of PKS and NRPS Gene Clusters in Arisostatin- and Kosinostatin-Producers and Description of Micromonospora okii sp. nov.	Komaki H, Ichikawa N, Hosoyama A, Hamada M, Igarashi Y.	Antibiotics (Basel)	10.3390/antibiotics10121447	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora okii (TBRC 15747, TP-A0468, NBRC 110461)

Name and taxonomic classification